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CloudMan as a platform for tool, data, and analysis distribution.

BMC bioinformatics

Afgan E, Chapman B, Taylor J.
PMID: 23181507
BMC Bioinformatics. 2012 Nov 27;13:315. doi: 10.1186/1471-2105-13-315.

BACKGROUND: Cloud computing provides an infrastructure that facilitates large scale computational analysis in a scalable, democratized fashion, However, in this context it is difficult to ensure sharing of an analysis environment and associated data in a scalable and precisely...

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Afgan E, Chapman B, Taylor J. CloudMan as a platform for tool, data, and analysis distribution. BMC Bioinformatics. 2012;13:315doi: 10.1186/1471-2105-13-315.
Afgan, E., Chapman, B., & Taylor, J. (2012). CloudMan as a platform for tool, data, and analysis distribution. BMC bioinformatics, 13315. https://doi.org/10.1186/1471-2105-13-315
Afgan, Enis, et al. "CloudMan as a platform for tool, data, and analysis distribution." BMC bioinformatics vol. 13 (2012): 315. doi: https://doi.org/10.1186/1471-2105-13-315
Afgan E, Chapman B, Taylor J. CloudMan as a platform for tool, data, and analysis distribution. BMC Bioinformatics. 2012 Nov 27;13:315. doi: 10.1186/1471-2105-13-315. PMID: 23181507; PMCID: PMC3556322.
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Effect of body position on ventilation distribution during PEEP titration in a porcine model of acute lung injury using advanced respiratory monitoring and electrical impedance tomography.

Intensive care medicine experimental

Pfurtscheller K, Ring S, Beran E, Sorantin E, Zobel J, Ganster D, Avian A, Zobel G.
PMID: 26215805
Intensive Care Med Exp. 2015 Dec;3(1):38. doi: 10.1186/s40635-014-0038-6. Epub 2015 Jan 31.

BACKGROUND: Lung failure after acute lung injury remains a challenge in different clinical settings. Various interventions for restoration of gas exchange have been investigated. Recruitment of collapsed alveoli by positive end expiratory pressure (PEEP) titration and optimization of ventilation-perfusion...

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Pfurtscheller K, Ring S, Beran E, et al. Effect of body position on ventilation distribution during PEEP titration in a porcine model of acute lung injury using advanced respiratory monitoring and electrical impedance tomography. Intensive Care Med Exp. 2015;3(1):38doi: 10.1186/s40635-014-0038-6.
Pfurtscheller, K., Ring, S., Beran, E., Sorantin, E., Zobel, J., Ganster, D., Avian, A., & Zobel, G. (2015). Effect of body position on ventilation distribution during PEEP titration in a porcine model of acute lung injury using advanced respiratory monitoring and electrical impedance tomography. Intensive care medicine experimental, 3(1), 38. https://doi.org/10.1186/s40635-014-0038-6
Pfurtscheller, Klaus, et al. "Effect of body position on ventilation distribution during PEEP titration in a porcine model of acute lung injury using advanced respiratory monitoring and electrical impedance tomography." Intensive care medicine experimental vol. 3,1 (2015): 38. doi: https://doi.org/10.1186/s40635-014-0038-6
Pfurtscheller K, Ring S, Beran E, Sorantin E, Zobel J, Ganster D, Avian A, Zobel G. Effect of body position on ventilation distribution during PEEP titration in a porcine model of acute lung injury using advanced respiratory monitoring and electrical impedance tomography. Intensive Care Med Exp. 2015 Dec;3(1):38. doi: 10.1186/s40635-014-0038-6. Epub 2015 Jan 31. PMID: 26215805; PMCID: PMC4513029.
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Dissemination of scientific software with Galaxy ToolShed.

Genome biology

Blankenberg D, Von Kuster G, Bouvier E, Baker D, Afgan E, Stoler N, Taylor J, Nekrutenko A.
PMID: 25001293
Genome Biol. 2014 Feb 20;15(2):403. doi: 10.1186/gb4161.

The proliferation of web-based integrative analysis frameworks has enabled users to perform complex analyses directly through the web. Unfortunately, it also revoked the freedom to easily select the most appropriate tools. To address this, we have developed Galaxy ToolShed.

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Blankenberg D, Von Kuster G, Bouvier E, et al. Dissemination of scientific software with Galaxy ToolShed. Genome Biol. 2014;15(2):403doi: 10.1186/gb4161.
Blankenberg, D., Von Kuster, G., Bouvier, E., Baker, D., Afgan, E., Stoler, N., Taylor, J., & Nekrutenko, A. (2014). Dissemination of scientific software with Galaxy ToolShed. Genome biology, 15(2), 403. https://doi.org/10.1186/gb4161
Blankenberg, Daniel, et al. "Dissemination of scientific software with Galaxy ToolShed." Genome biology vol. 15,2 (2014): 403. doi: https://doi.org/10.1186/gb4161
Blankenberg D, Von Kuster G, Bouvier E, Baker D, Afgan E, Stoler N, Taylor J, Nekrutenko A. Dissemination of scientific software with Galaxy ToolShed. Genome Biol. 2014 Feb 20;15(2):403. doi: 10.1186/gb4161. PMID: 25001293; PMCID: PMC4038738.
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Adult-onset Still's disease revealed by facial edema.

Journal of the American Academy of Dermatology

Dauendorffer JN, Begon E, Petit A, Liote F, Dubertret L, Bachelez H.
PMID: 18280370
J Am Acad Dermatol. 2008 Mar;58(3):533-5. doi: 10.1016/j.jaad.2007.01.045.

No abstract available.

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Dauendorffer JN, Begon E, Petit A, et al. Adult-onset Still's disease revealed by facial edema. J Am Acad Dermatol. 2008;58(3):533-5doi: 10.1016/j.jaad.2007.01.045.
Dauendorffer, J. N., Begon, E., Petit, A., Liote, F., Dubertret, L., & Bachelez, H. (2008). Adult-onset Still's disease revealed by facial edema. Journal of the American Academy of Dermatology, 58(3), 533-5. https://doi.org/10.1016/j.jaad.2007.01.045
Dauendorffer, Jean-Noël, et al. "Adult-onset Still's disease revealed by facial edema." Journal of the American Academy of Dermatology vol. 58,3 (2008): 533-5. doi: https://doi.org/10.1016/j.jaad.2007.01.045
Dauendorffer JN, Begon E, Petit A, Liote F, Dubertret L, Bachelez H. Adult-onset Still's disease revealed by facial edema. J Am Acad Dermatol. 2008 Mar;58(3):533-5. doi: 10.1016/j.jaad.2007.01.045. PMID: 18280370.
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Wegener's granulomatosis overlapping with Takayasu's arteritis revealed by FDG-PET scan.

European journal of internal medicine

Vandergheynst F, Goldman S, Cogan E.
PMID: 17338969
Eur J Intern Med. 2007 Mar;18(2):148-9. doi: 10.1016/j.ejim.2006.07.027.

We report the case of a 23-year-old woman who initially presented with Wegener's granulomatosis (WG) limited to the lungs, diagnosed on the basis of a biopsy of an upper left lobe nodule and elevated ANCA titers. Remission occurred under...

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Vandergheynst F, Goldman S, Cogan E. Wegener's granulomatosis overlapping with Takayasu's arteritis revealed by FDG-PET scan. Eur J Intern Med. 2007;18(2):148-9doi: 10.1016/j.ejim.2006.07.027.
Vandergheynst, F., Goldman, S., & Cogan, E. (2007). Wegener's granulomatosis overlapping with Takayasu's arteritis revealed by FDG-PET scan. European journal of internal medicine, 18(2), 148-9. https://doi.org/10.1016/j.ejim.2006.07.027
Vandergheynst, F, et al. "Wegener's granulomatosis overlapping with Takayasu's arteritis revealed by FDG-PET scan." European journal of internal medicine vol. 18,2 (2007): 148-9. doi: https://doi.org/10.1016/j.ejim.2006.07.027
Vandergheynst F, Goldman S, Cogan E. Wegener's granulomatosis overlapping with Takayasu's arteritis revealed by FDG-PET scan. Eur J Intern Med. 2007 Mar;18(2):148-9. doi: 10.1016/j.ejim.2006.07.027. PMID: 17338969.
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Renormalization-group evolution of the gluonic CP-violating operator.

Physical review. D, Particles and fields

Bagan E, Mann RB, Sarkar U, Steele TG.
PMID: 10013607
Phys Rev D Part Fields. 1991 Apr 01;43(7):2233-2235. doi: 10.1103/physrevd.43.2233.

No abstract available.

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Bagan E, Mann RB, Sarkar U, et al. Renormalization-group evolution of the gluonic CP-violating operator. Phys Rev D Part Fields. 1991;43(7):2233-2235doi: 10.1103/physrevd.43.2233.
Bagan, E., Mann, R. B., Sarkar, U., & Steele, T. G. (1991). Renormalization-group evolution of the gluonic CP-violating operator. Physical review. D, Particles and fields, 43(7), 2233-2235. https://doi.org/10.1103/physrevd.43.2233
Bagan, et al. "Renormalization-group evolution of the gluonic CP-violating operator." Physical review. D, Particles and fields vol. 43,7 (1991): 2233-2235. doi: https://doi.org/10.1103/physrevd.43.2233
Bagan E, Mann RB, Sarkar U, Steele TG. Renormalization-group evolution of the gluonic CP-violating operator. Phys Rev D Part Fields. 1991 Apr 01;43(7):2233-2235. doi: 10.1103/physrevd.43.2233. PMID: 10013607.
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Blending Powder Process for Recycling Sintered Nd-Fe-B Magnets.

Materials (Basel, Switzerland)

Prokofev PA, Kolchugina NB, Skotnicova K, Burkhanov GS, Kursa M, Zheleznyi MV, Dormidontov NA, Cegan T, Bakulina AS, Koshkidko YS, Smetana B.
PMID: 32650445
Materials (Basel). 2020 Jul 08;13(14). doi: 10.3390/ma13143049.

The wide application of Nd-Fe-B permanent magnets, in addition to rare-earth metal resource constraints, creates the necessity of the development of efficient technologies for recycling sintered Nd-Fe-B permanent magnets. In the present study, a magnet-to-magnet recycling process is considered....

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Prokofev PA, Kolchugina NB, Skotnicova K, et al. Blending Powder Process for Recycling Sintered Nd-Fe-B Magnets. Materials (Basel). 2020;13(14)doi: 10.3390/ma13143049.
Prokofev, P. A., Kolchugina, N. B., Skotnicova, K., Burkhanov, G. S., Kursa, M., Zheleznyi, M. V., Dormidontov, N. A., Cegan, T., Bakulina, A. S., Koshkidko, Y. S., & Smetana, B. (2020). Blending Powder Process for Recycling Sintered Nd-Fe-B Magnets. Materials (Basel, Switzerland), 13(14), . https://doi.org/10.3390/ma13143049
Prokofev, Pavel A, et al. "Blending Powder Process for Recycling Sintered Nd-Fe-B Magnets." Materials (Basel, Switzerland) vol. 13,14 (2020). doi: https://doi.org/10.3390/ma13143049
Prokofev PA, Kolchugina NB, Skotnicova K, Burkhanov GS, Kursa M, Zheleznyi MV, Dormidontov NA, Cegan T, Bakulina AS, Koshkidko YS, Smetana B. Blending Powder Process for Recycling Sintered Nd-Fe-B Magnets. Materials (Basel). 2020 Jul 08;13(14). doi: 10.3390/ma13143049. PMID: 32650445; PMCID: PMC7411784.
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Vascular skin symptoms in COVID-19: a French observational study.

Journal of the European Academy of Dermatology and Venereology : JEADV

Bouaziz JD, Duong TA, Jachiet M, Velter C, Lestang P, Cassius C, Arsouze A, Domergue Than Trong E, Bagot M, Begon E, Sulimovic L, Rybojad M.
PMID: 32339344
J Eur Acad Dermatol Venereol. 2020 Sep;34(9):e451-e452. doi: 10.1111/jdv.16544. Epub 2020 Jul 20.

No abstract available.

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Bouaziz JD, Duong TA, Jachiet M, et al. Vascular skin symptoms in COVID-19: a French observational study. J Eur Acad Dermatol Venereol. 2020;34(9):e451-e452doi: 10.1111/jdv.16544.
Bouaziz, J. D., Duong, T. A., Jachiet, M., Velter, C., Lestang, P., Cassius, C., Arsouze, A., Domergue Than Trong, E., Bagot, M., Begon, E., Sulimovic, L., & Rybojad, M. (2020). Vascular skin symptoms in COVID-19: a French observational study. Journal of the European Academy of Dermatology and Venereology : JEADV, 34(9), e451-e452. https://doi.org/10.1111/jdv.16544
Bouaziz, J D, et al. "Vascular skin symptoms in COVID-19: a French observational study." Journal of the European Academy of Dermatology and Venereology : JEADV vol. 34,9 (2020): e451-e452. doi: https://doi.org/10.1111/jdv.16544
Bouaziz JD, Duong TA, Jachiet M, Velter C, Lestang P, Cassius C, Arsouze A, Domergue Than Trong E, Bagot M, Begon E, Sulimovic L, Rybojad M. Vascular skin symptoms in COVID-19: a French observational study. J Eur Acad Dermatol Venereol. 2020 Sep;34(9):e451-e452. doi: 10.1111/jdv.16544. Epub 2020 Jul 20. PMID: 32339344; PMCID: PMC7267662.
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Relationship between mean platelet volume and C-reactive protein.

Proceedings (Baylor University. Medical Center)

Beyan C, Beyan E.
PMID: 32675997
Proc (Bayl Univ Med Cent). 2020 Jul 06;33(3):476-477. doi: 10.1080/08998280.2020.1768781. eCollection 2020 Jul.

No abstract available.

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Beyan C, Beyan E. Relationship between mean platelet volume and C-reactive protein. Proc (Bayl Univ Med Cent). 2020;33(3):476-477doi: 10.1080/08998280.2020.1768781.
Beyan, C., & Beyan, E. (2020). Relationship between mean platelet volume and C-reactive protein. Proceedings (Baylor University. Medical Center), 33(3), 476-477. https://doi.org/10.1080/08998280.2020.1768781
Beyan, Cengiz, and Beyan, Esin. "Relationship between mean platelet volume and C-reactive protein." Proceedings (Baylor University. Medical Center) vol. 33,3 (2020): 476-477. doi: https://doi.org/10.1080/08998280.2020.1768781
Beyan C, Beyan E. Relationship between mean platelet volume and C-reactive protein. Proc (Bayl Univ Med Cent). 2020 Jul 06;33(3):476-477. doi: 10.1080/08998280.2020.1768781. eCollection 2020 Jul. PMID: 32675997; PMCID: PMC7340450.
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Circulating tumour cells in patients with urothelial tumours: Enrichment and in vitro culture.

Canadian Urological Association journal = Journal de l'Association des urologues du Canada

Kolostova K, Cegan M, Bobek V.
PMID: 25408812
Can Urol Assoc J. 2014 Sep;8(9):E715-20. doi: 10.5489/cuaj.1978.

INTRODUCTION: Results of clinical trials have demonstrated that circulating tumour cells (CTCs) are frequently detected in patients with urothelial tumours. The monitoring of CTCs has the potential to improve therapeutic management at an early stage and also to identify...

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Kolostova K, Cegan M, Bobek V. Circulating tumour cells in patients with urothelial tumours: Enrichment and in vitro culture. Can Urol Assoc J. 2014;8(9):E715-20doi: 10.5489/cuaj.1978.
Kolostova, K., Cegan, M., & Bobek, V. (2014). Circulating tumour cells in patients with urothelial tumours: Enrichment and in vitro culture. Canadian Urological Association journal = Journal de l'Association des urologues du Canada, 8(9), E715-20. https://doi.org/10.5489/cuaj.1978
Kolostova, Katarina, et al. "Circulating tumour cells in patients with urothelial tumours: Enrichment and in vitro culture." Canadian Urological Association journal = Journal de l'Association des urologues du Canada vol. 8,9 (2014): E715-20. doi: https://doi.org/10.5489/cuaj.1978
Kolostova K, Cegan M, Bobek V. Circulating tumour cells in patients with urothelial tumours: Enrichment and in vitro culture. Can Urol Assoc J. 2014 Sep;8(9):E715-20. doi: 10.5489/cuaj.1978. PMID: 25408812; PMCID: PMC4216304.
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Rapid Progression of Angioimmunoblastic T Cell Lymphoma Following BNT162b2 mRNA Vaccine Booster Shot: A Case Report.

Frontiers in medicine

Goldman S, Bron D, Tousseyn T, Vierasu I, Dewispelaere L, Heimann P, Cogan E, Goldman M.
PMID: 34901098
Front Med (Lausanne). 2021 Nov 25;8:798095. doi: 10.3389/fmed.2021.798095. eCollection 2021.

Since nucleoside-modified mRNA vaccines strongly activate T follicular helper cells, it is important to explore the possible impact of approved SARS-CoV-2 mRNA vaccines on neoplasms affecting this cell type. Herein, we report and discuss unexpected rapid progression of lymphomatous...

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Goldman S, Bron D, Tousseyn T, et al. Rapid Progression of Angioimmunoblastic T Cell Lymphoma Following BNT162b2 mRNA Vaccine Booster Shot: A Case Report. Front Med (Lausanne). 2021;8:798095doi: 10.3389/fmed.2021.798095.
Goldman, S., Bron, D., Tousseyn, T., Vierasu, I., Dewispelaere, L., Heimann, P., Cogan, E., & Goldman, M. (2021). Rapid Progression of Angioimmunoblastic T Cell Lymphoma Following BNT162b2 mRNA Vaccine Booster Shot: A Case Report. Frontiers in medicine, 8798095. https://doi.org/10.3389/fmed.2021.798095
Goldman, Serge, et al. "Rapid Progression of Angioimmunoblastic T Cell Lymphoma Following BNT162b2 mRNA Vaccine Booster Shot: A Case Report." Frontiers in medicine vol. 8 (2021): 798095. doi: https://doi.org/10.3389/fmed.2021.798095
Goldman S, Bron D, Tousseyn T, Vierasu I, Dewispelaere L, Heimann P, Cogan E, Goldman M. Rapid Progression of Angioimmunoblastic T Cell Lymphoma Following BNT162b2 mRNA Vaccine Booster Shot: A Case Report. Front Med (Lausanne). 2021 Nov 25;8:798095. doi: 10.3389/fmed.2021.798095. eCollection 2021. PMID: 34901098; PMCID: PMC8656165.
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Mean Platelet Volume May Not Predict Restenosis After Carotid Endarterectomy.

Annals of vascular surgery

Beyan C, Beyan E.
PMID: 34890755
Ann Vasc Surg. 2021 Dec 07; doi: 10.1016/j.avsg.2021.11.001. Epub 2021 Dec 07.

No abstract available.

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Beyan C, Beyan E. Mean Platelet Volume May Not Predict Restenosis After Carotid Endarterectomy. Ann Vasc Surg. 2021;doi: 10.1016/j.avsg.2021.11.001.
Beyan, C., & Beyan, E. (2021). Mean Platelet Volume May Not Predict Restenosis After Carotid Endarterectomy. Annals of vascular surgery, . https://doi.org/10.1016/j.avsg.2021.11.001
Beyan, Cengiz, and Beyan, Esin. "Mean Platelet Volume May Not Predict Restenosis After Carotid Endarterectomy." Annals of vascular surgery vol. (2021). doi: https://doi.org/10.1016/j.avsg.2021.11.001
Beyan C, Beyan E. Mean Platelet Volume May Not Predict Restenosis After Carotid Endarterectomy. Ann Vasc Surg. 2021 Dec 07; doi: 10.1016/j.avsg.2021.11.001. Epub 2021 Dec 07. PMID: 34890755.
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