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Correction: Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability.

Cell reports. Medicine

McDermott JE, Arshad OA, Petyuk VA, Fu Y, Gritsenko MA, Clauss TR, Moore RJ, Schepmoes AA, Zhao R, Monroe ME, Schnaubelt M, Tsai CF, Payne SH, Huang C, Wang LB, Foltz S, Wyczalkowski M, Wu Y, Song E, Brewer MA, Thiagarajan M, Kinsinger CR, Robles AI, Boja ES, Rodriguez H, Chan DW, Zhang B, Zhang Z, Ding L, Smith RD, Liu T, Rodland KD.
PMID: 32954372
Cell Rep Med. 2020 Aug 25;1(5). doi: 10.1016/j.xcrm.2020.100075.

[This corrects the article PMC7289043.].

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McDermott JE, Arshad OA, Petyuk VA, et al. Correction: Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability. Cell Rep Med. 2020;1(5)doi: 10.1016/j.xcrm.2020.100075.
McDermott, J. E., Arshad, O. A., Petyuk, V. A., Fu, Y., Gritsenko, M. A., Clauss, T. R., Moore, R. J., Schepmoes, A. A., Zhao, R., Monroe, M. E., Schnaubelt, M., Tsai, C. F., Payne, S. H., Huang, C., Wang, L. B., Foltz, S., Wyczalkowski, M., Wu, Y., Song, E., Brewer, M. A., Thiagarajan, M., Kinsinger, C. R., Robles, A. I., Boja, E. S., Rodriguez, H., Chan, D. W., Zhang, B., Zhang, Z., Ding, L., Smith, R. D., Liu, T., Rodland, K. D. (2020). Correction: Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability. Cell reports. Medicine, 1(5), . https://doi.org/10.1016/j.xcrm.2020.100075
McDermott, Jason E, et al. "Correction: Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability." Cell reports. Medicine vol. 1,5 (2020). doi: https://doi.org/10.1016/j.xcrm.2020.100075
McDermott JE, Arshad OA, Petyuk VA, Fu Y, Gritsenko MA, Clauss TR, Moore RJ, Schepmoes AA, Zhao R, Monroe ME, Schnaubelt M, Tsai CF, Payne SH, Huang C, Wang LB, Foltz S, Wyczalkowski M, Wu Y, Song E, Brewer MA, Thiagarajan M, Kinsinger CR, Robles AI, Boja ES, Rodriguez H, Chan DW, Zhang B, Zhang Z, Ding L, Smith RD, Liu T, Rodland KD. Correction: Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability. Cell Rep Med. 2020 Aug 25;1(5). doi: 10.1016/j.xcrm.2020.100075. PMID: 32954372; PMCID: PMC7500561.
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Proteomic Tissue-Based Classifier for Early Prediction of Prostate Cancer Progression.

Cancers

Gao Y, Wang YT, Chen Y, Wang H, Young D, Shi T, Song Y, Schepmoes AA, Kuo C, Fillmore TL, Qian WJ, Smith RD, Srivastava S, Kagan J, Dobi A, Sesterhenn IA, Rosner IL, Petrovics G, Rodland KD, Srivastava S, Cullen J, Liu T.
PMID: 32429558
Cancers (Basel). 2020 May 17;12(5). doi: 10.3390/cancers12051268.

Although ~40% of screen-detected prostate cancers (PCa) are indolent, advanced-stage PCa is a lethal disease with 5-year survival rates around 29%. Identification of biomarkers for early detection of aggressive disease is a key challenge. Starting with 52 candidate biomarkers,...

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Gao Y, Wang YT, Chen Y, et al. Proteomic Tissue-Based Classifier for Early Prediction of Prostate Cancer Progression. Cancers (Basel). 2020;12(5)doi: 10.3390/cancers12051268.
Gao, Y., Wang, Y. T., Chen, Y., Wang, H., Young, D., Shi, T., Song, Y., Schepmoes, A. A., Kuo, C., Fillmore, T. L., Qian, W. J., Smith, R. D., Srivastava, S., Kagan, J., Dobi, A., Sesterhenn, I. A., Rosner, I. L., Petrovics, G., Rodland, K. D., Srivastava, S., Cullen, J., & Liu, T. (2020). Proteomic Tissue-Based Classifier for Early Prediction of Prostate Cancer Progression. Cancers, 12(5), . https://doi.org/10.3390/cancers12051268
Gao, Yuqian, et al. "Proteomic Tissue-Based Classifier for Early Prediction of Prostate Cancer Progression." Cancers vol. 12,5 (2020). doi: https://doi.org/10.3390/cancers12051268
Gao Y, Wang YT, Chen Y, Wang H, Young D, Shi T, Song Y, Schepmoes AA, Kuo C, Fillmore TL, Qian WJ, Smith RD, Srivastava S, Kagan J, Dobi A, Sesterhenn IA, Rosner IL, Petrovics G, Rodland KD, Srivastava S, Cullen J, Liu T. Proteomic Tissue-Based Classifier for Early Prediction of Prostate Cancer Progression. Cancers (Basel). 2020 May 17;12(5). doi: 10.3390/cancers12051268. PMID: 32429558; PMCID: PMC7281161.
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Proteomics Coupled with Metabolite and Cell Wall Profiling Reveal Metabolic Processes of a Developing Rice Stem Internode.

Frontiers in plant science

Lin F, Williams BJ, Thangella PAV, Ladak A, Schepmoes AA, Olivos HJ, Zhao K, Callister SJ, Bartley LE.
PMID: 28751896
Front Plant Sci. 2017 Jul 13;8:1134. doi: 10.3389/fpls.2017.01134. eCollection 2017.

Internodes of grass stems function in mechanical support, transport, and, in some species, are a major sink organ for carbon in the form of cell wall polymers. This study reports cell wall composition, proteomic, and metabolite analyses of the...

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Lin F, Williams BJ, Thangella PAV, et al. Proteomics Coupled with Metabolite and Cell Wall Profiling Reveal Metabolic Processes of a Developing Rice Stem Internode. Front Plant Sci. 2017;8:1134doi: 10.3389/fpls.2017.01134.
Lin, F., Williams, B. J., Thangella, P. A. V., Ladak, A., Schepmoes, A. A., Olivos, H. J., Zhao, K., Callister, S. J., & Bartley, L. E. (2017). Proteomics Coupled with Metabolite and Cell Wall Profiling Reveal Metabolic Processes of a Developing Rice Stem Internode. Frontiers in plant science, 81134. https://doi.org/10.3389/fpls.2017.01134
Lin, Fan, et al. "Proteomics Coupled with Metabolite and Cell Wall Profiling Reveal Metabolic Processes of a Developing Rice Stem Internode." Frontiers in plant science vol. 8 (2017): 1134. doi: https://doi.org/10.3389/fpls.2017.01134
Lin F, Williams BJ, Thangella PAV, Ladak A, Schepmoes AA, Olivos HJ, Zhao K, Callister SJ, Bartley LE. Proteomics Coupled with Metabolite and Cell Wall Profiling Reveal Metabolic Processes of a Developing Rice Stem Internode. Front Plant Sci. 2017 Jul 13;8:1134. doi: 10.3389/fpls.2017.01134. eCollection 2017. PMID: 28751896; PMCID: PMC5507963.
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Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability.

Cell reports. Medicine

McDermott JE, Arshad OA, Petyuk VA, Fu Y, Gritsenko MA, Clauss TR, Moore RJ, Schepmoes AA, Zhao R, Monroe ME, Schnaubelt M, Tsai CF, Payne SH, Huang C, Wang LB, Foltz S, Wyczalkowski M, Wu Y, Song E, Brewer MA, Thiagarajan M, Kinsinger CR, Robles AI, Boja ES, Rodriguez H, Chan DW, Zhang B, Zhang Z, Ding L, Smith RD, Liu T, Rodland KD.
PMID: 32529193
Cell Rep Med. 2020 Apr 21;1(1). doi: 10.1016/j.xcrm.2020.100004. Epub 2020 Apr 10.

In the absence of a dominant driving mutation other than uniformly present TP53 mutations, deeper understanding of the biology driving ovarian high-grade serous cancer (HGSC) requires analysis at a functional level, including post-translational modifications. Comprehensive proteogenomic and phosphoproteomic characterization...

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McDermott JE, Arshad OA, Petyuk VA, et al. Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability. Cell Rep Med. 2020;1(1)doi: 10.1016/j.xcrm.2020.100004.
McDermott, J. E., Arshad, O. A., Petyuk, V. A., Fu, Y., Gritsenko, M. A., Clauss, T. R., Moore, R. J., Schepmoes, A. A., Zhao, R., Monroe, M. E., Schnaubelt, M., Tsai, C. F., Payne, S. H., Huang, C., Wang, L. B., Foltz, S., Wyczalkowski, M., Wu, Y., Song, E., Brewer, M. A., Thiagarajan, M., Kinsinger, C. R., Robles, A. I., Boja, E. S., Rodriguez, H., Chan, D. W., Zhang, B., Zhang, Z., Ding, L., Smith, R. D., Liu, T., Rodland, K. D. (2020). Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability. Cell reports. Medicine, 1(1), . https://doi.org/10.1016/j.xcrm.2020.100004
McDermott, Jason E, et al. "Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability." Cell reports. Medicine vol. 1,1 (2020). doi: https://doi.org/10.1016/j.xcrm.2020.100004
McDermott JE, Arshad OA, Petyuk VA, Fu Y, Gritsenko MA, Clauss TR, Moore RJ, Schepmoes AA, Zhao R, Monroe ME, Schnaubelt M, Tsai CF, Payne SH, Huang C, Wang LB, Foltz S, Wyczalkowski M, Wu Y, Song E, Brewer MA, Thiagarajan M, Kinsinger CR, Robles AI, Boja ES, Rodriguez H, Chan DW, Zhang B, Zhang Z, Ding L, Smith RD, Liu T, Rodland KD. Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability. Cell Rep Med. 2020 Apr 21;1(1). doi: 10.1016/j.xcrm.2020.100004. Epub 2020 Apr 10. PMID: 32529193; PMCID: PMC7289043.
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MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses.

mSystems

Nakayasu ES, Nicora CD, Sims AC, Burnum-Johnson KE, Kim YM, Kyle JE, Matzke MM, Shukla AK, Chu RK, Schepmoes AA, Jacobs JM, Baric RS, Webb-Robertson BJ, Smith RD, Metz TO.
PMID: 27822525
mSystems. 2016 May 10;1(3). doi: 10.1128/mSystems.00043-16. eCollection 2016.

Integrative multi-omics analyses can empower more effective investigation and complete understanding of complex biological systems. Despite recent advances in a range of omics analyses, multi-omic measurements of the same sample are still challenging and current methods have not been...

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Nakayasu ES, Nicora CD, Sims AC, et al. MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses. mSystems. 2016;1(3)doi: 10.1128/mSystems.00043-16.
Nakayasu, E. S., Nicora, C. D., Sims, A. C., Burnum-Johnson, K. E., Kim, Y. M., Kyle, J. E., Matzke, M. M., Shukla, A. K., Chu, R. K., Schepmoes, A. A., Jacobs, J. M., Baric, R. S., Webb-Robertson, B. J., Smith, R. D., & Metz, T. O. (2016). MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses. mSystems, 1(3), . https://doi.org/10.1128/mSystems.00043-16
Nakayasu, Ernesto S, et al. "MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses." mSystems vol. 1,3 (2016). doi: https://doi.org/10.1128/mSystems.00043-16
Nakayasu ES, Nicora CD, Sims AC, Burnum-Johnson KE, Kim YM, Kyle JE, Matzke MM, Shukla AK, Chu RK, Schepmoes AA, Jacobs JM, Baric RS, Webb-Robertson BJ, Smith RD, Metz TO. MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses. mSystems. 2016 May 10;1(3). doi: 10.1128/mSystems.00043-16. eCollection 2016. PMID: 27822525; PMCID: PMC5069757.
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The AML microenvironment catalyzes a stepwise evolution to gilteritinib resistance.

Cancer cell

Joshi SK, Nechiporuk T, Bottomly D, Piehowski PD, Reisz JA, Pittsenbarger J, Kaempf A, Gosline SJC, Wang YT, Hansen JR, Gritsenko MA, Hutchinson C, Weitz KK, Moon J, Cendali F, Fillmore TL, Tsai CF, Schepmoes AA, Shi T, Arshad OA, McDermott JE, Babur O, Watanabe-Smith K, Demir E, D'Alessandro A, Liu T, Tognon CE, Tyner JW, McWeeney SK, Rodland KD, Druker BJ, Traer E.
PMID: 34171263
Cancer Cell. 2021 Jul 12;39(7):999-1014.e8. doi: 10.1016/j.ccell.2021.06.003. Epub 2021 Jun 24.

Our study details the stepwise evolution of gilteritinib resistance in FLT3-mutated acute myeloid leukemia (AML). Early resistance is mediated by the bone marrow microenvironment, which protects residual leukemia cells. Over time, leukemia cells evolve intrinsic mechanisms of resistance, or...

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Joshi SK, Nechiporuk T, Bottomly D, et al. The AML microenvironment catalyzes a stepwise evolution to gilteritinib resistance. Cancer Cell. 2021;39(7):999-1014.e8doi: 10.1016/j.ccell.2021.06.003.
Joshi, S. K., Nechiporuk, T., Bottomly, D., Piehowski, P. D., Reisz, J. A., Pittsenbarger, J., Kaempf, A., Gosline, S. J. C., Wang, Y. T., Hansen, J. R., Gritsenko, M. A., Hutchinson, C., Weitz, K. K., Moon, J., Cendali, F., Fillmore, T. L., Tsai, C. F., Schepmoes, A. A., Shi, T., Arshad, O. A., McDermott, J. E., Babur, O., Watanabe-Smith, K., Demir, E., D'Alessandro, A., Liu, T., Tognon, C. E., Tyner, J. W., McWeeney, S. K., Rodland, K. D., Druker, B. J., & Traer, E. (2021). The AML microenvironment catalyzes a stepwise evolution to gilteritinib resistance. Cancer cell, 39(7), 999-1014.e8. https://doi.org/10.1016/j.ccell.2021.06.003
Joshi, Sunil K, et al. "The AML microenvironment catalyzes a stepwise evolution to gilteritinib resistance." Cancer cell vol. 39,7 (2021): 999-1014.e8. doi: https://doi.org/10.1016/j.ccell.2021.06.003
Joshi SK, Nechiporuk T, Bottomly D, Piehowski PD, Reisz JA, Pittsenbarger J, Kaempf A, Gosline SJC, Wang YT, Hansen JR, Gritsenko MA, Hutchinson C, Weitz KK, Moon J, Cendali F, Fillmore TL, Tsai CF, Schepmoes AA, Shi T, Arshad OA, McDermott JE, Babur O, Watanabe-Smith K, Demir E, D'Alessandro A, Liu T, Tognon CE, Tyner JW, McWeeney SK, Rodland KD, Druker BJ, Traer E. The AML microenvironment catalyzes a stepwise evolution to gilteritinib resistance. Cancer Cell. 2021 Jul 12;39(7):999-1014.e8. doi: 10.1016/j.ccell.2021.06.003. Epub 2021 Jun 24. PMID: 34171263.
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