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Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2

pipeline programs

Forsberg BO, Kimanius D, Lindahl E, Scheres SHW.
GSID: sb4nEjZ4N0oJ
D Kimanius, BO Forsberg, SHW Scheres, E Lindahl - elife, 2016 - elifesciences.org

By reaching near-atomic resolution for a wide range of specimens, single-particle cryo-EM structure determination is transforming structural biology. However, the necessary …

An identity‐oriented lens to TESOL teachers' lives: Introducing the special issue

teaching innovation

Lindahl K, Yazan B.
GSID: Xhor_VTa_KsJ
K Lindahl, B Yazan - TESOL Journal, 2019 - yazan.people.ua.edu

The idea of the 2019 TESOL Journal Special Issue emerged from a collaborative intersection panel between two TESOL International Association Interest Sections, the …

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Lindahl, K., & Yazan, B. (2019). An identity‐oriented lens to TESOL teachers’ lives: Introducing the special issue. TESOL Journal, 10(4), 1-5.
Lindahl, Kristen, and Bedrettin Yazan. "An identity‐oriented lens to TESOL teachers’ lives: Introducing the special issue." TESOL Journal 10.4 (2019): 1-5.
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[Isotope measuring in labyrinth changes. Preliminary communication on a diagnostic method in Ménière's disease].

Nordisk medicin

Lindahl G, Söderborg B, Lauber A.
PMID: 5543755
Nord Med. 1971 Feb 04;85(5):160.

No abstract available.

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Lindahl G, Söderborg B, Lauber A. Isotopmätning vid labyrintförändring. Preliminärt meddelande om en diagnostikmethod vid mb. Mënière. [Isotope measuring in labyrinth changes. Preliminary communication on a diagnostic method in Ménière's disease]. Nord Med. 1971;85(5):160
Lindahl, G., Söderborg, B., & Lauber, A. (1971). Isotopmätning vid labyrintförändring. Preliminärt meddelande om en diagnostikmethod vid mb. Mënière. [Isotope measuring in labyrinth changes. Preliminary communication on a diagnostic method in Ménière's disease]. Nordisk medicin, 85(5), 160.
Lindahl, G, et al. "Isotopmätning vid labyrintförändring. Preliminärt meddelande om en diagnostikmethod vid mb. Mënière." [Isotope measuring in labyrinth changes. Preliminary communication on a diagnostic method in Ménière's disease]. Nordisk medicin vol. 85,5 (1971): 160.
Lindahl G, Söderborg B, Lauber A. Isotopmätning vid labyrintförändring. Preliminärt meddelande om en diagnostikmethod vid mb. Mënière. [Isotope measuring in labyrinth changes. Preliminary communication on a diagnostic method in Ménière's disease]. Nord Med. 1971 Feb 04;85(5):160. Swedish. PMID: 5543755.
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At the interface of stem cell research and new technologies.

Journal of internal medicine

Lendahl U.
PMID: 27539905
J Intern Med. 2016 Sep;280(3):232-5. doi: 10.1111/joim.12513.

No abstract available.

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Lendahl U. At the interface of stem cell research and new technologies. J Intern Med. 2016;280(3):232-5doi: 10.1111/joim.12513.
Lendahl, U. (2016). At the interface of stem cell research and new technologies. Journal of internal medicine, 280(3), 232-5. https://doi.org/10.1111/joim.12513
Lendahl, U. "At the interface of stem cell research and new technologies." Journal of internal medicine vol. 280,3 (2016): 232-5. doi: https://doi.org/10.1111/joim.12513
Lendahl U. At the interface of stem cell research and new technologies. J Intern Med. 2016 Sep;280(3):232-5. doi: 10.1111/joim.12513. PMID: 27539905.
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In reply.

Annals of emergency medicine

Mueller C, Giannitsis E, Lindahl B.
PMID: 27217136
Ann Emerg Med. 2016 Jun;67(6):794-795. doi: 10.1016/j.annemergmed.2016.02.037.

No abstract available.

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Mueller C, Giannitsis E, Lindahl B. In reply. Ann Emerg Med. 2016;67(6):794-795doi: 10.1016/j.annemergmed.2016.02.037.
Mueller, C., Giannitsis, E., & Lindahl, B. (2016). In reply. Annals of emergency medicine, 67(6), 794-795. https://doi.org/10.1016/j.annemergmed.2016.02.037
Mueller, Christian, et al. "In reply." Annals of emergency medicine vol. 67,6 (2016): 794-795. doi: https://doi.org/10.1016/j.annemergmed.2016.02.037
Mueller C, Giannitsis E, Lindahl B. In reply. Ann Emerg Med. 2016 Jun;67(6):794-795. doi: 10.1016/j.annemergmed.2016.02.037. PMID: 27217136.
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Enhanced evidence-based chinese medicine clinical practice guidelines in Hong Kong: a study protocol for three common diseases.

Evidence-based complementary and alternative medicine : eCAM

Shi N, Zhong LL, Han X, Ziea TC, Ng B, Bian Z, Lu A.
PMID: 25815035
Evid Based Complement Alternat Med. 2015;2015:482706. doi: 10.1155/2015/482706. Epub 2015 Mar 01.

We presented a study protocol of developing Chinese medicine clinical practice guidelines for three common diseases in Hong Kong, including insomnia, chronic gastritis, and cerebral infarction. This research project will be conducted in three phases. First phase is the...

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Shi N, Zhong LL, Han X, et al. Enhanced evidence-based chinese medicine clinical practice guidelines in Hong Kong: a study protocol for three common diseases. Evid Based Complement Alternat Med. 2015;2015:482706doi: 10.1155/2015/482706.
Shi, N., Zhong, L. L., Han, X., Ziea, T. C., Ng, B., Bian, Z., & Lu, A. (2015). Enhanced evidence-based chinese medicine clinical practice guidelines in Hong Kong: a study protocol for three common diseases. Evidence-based complementary and alternative medicine : eCAM, 2015482706. https://doi.org/10.1155/2015/482706
Shi, Nannan, et al. "Enhanced evidence-based chinese medicine clinical practice guidelines in Hong Kong: a study protocol for three common diseases." Evidence-based complementary and alternative medicine : eCAM vol. 2015 (2015): 482706. doi: https://doi.org/10.1155/2015/482706
Shi N, Zhong LL, Han X, Ziea TC, Ng B, Bian Z, Lu A. Enhanced evidence-based chinese medicine clinical practice guidelines in Hong Kong: a study protocol for three common diseases. Evid Based Complement Alternat Med. 2015;2015:482706. doi: 10.1155/2015/482706. Epub 2015 Mar 01. PMID: 25815035; PMCID: PMC4359828.
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Proinsulin C-peptide regulates ribosomal RNA expression.

The Journal of biological chemistry

Lindahl E, Nyman U, Zaman F, Palmberg C, Cascante A, Shafqat J, Takigawa M, Sävendahl L, Jörnvall H, Joseph B.
PMID: 28283590
J Biol Chem. 2017 Mar 10;292(10):4382. doi: 10.1074/jbc.A109.053587.

No abstract available.

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Lindahl E, Nyman U, Zaman F, et al. Proinsulin C-peptide regulates ribosomal RNA expression. J Biol Chem. 2017;292(10):4382doi: 10.1074/jbc.A109.053587.
Lindahl, E., Nyman, U., Zaman, F., Palmberg, C., Cascante, A., Shafqat, J., Takigawa, M., Sävendahl, L., Jörnvall, H., & Joseph, B. (2017). Proinsulin C-peptide regulates ribosomal RNA expression. The Journal of biological chemistry, 292(10), 4382. https://doi.org/10.1074/jbc.A109.053587
Lindahl, Emma, et al. "Proinsulin C-peptide regulates ribosomal RNA expression." The Journal of biological chemistry vol. 292,10 (2017): 4382. doi: https://doi.org/10.1074/jbc.A109.053587
Lindahl E, Nyman U, Zaman F, Palmberg C, Cascante A, Shafqat J, Takigawa M, Sävendahl L, Jörnvall H, Joseph B. Proinsulin C-peptide regulates ribosomal RNA expression. J Biol Chem. 2017 Mar 10;292(10):4382. doi: 10.1074/jbc.A109.053587. PMID: 28283590; PMCID: PMC5354506.
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[No title available]

Wilhelm Roux' Archiv fur Entwicklungsmechanik der Organismen

Lindahl PE.
PMID: 28354403
Wilhelm Roux Arch Entwickl Mech Org. 1933 Mar;127(1):323-338. doi: 10.1007/BF01390721.

No abstract available.

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Lindahl PE. Zur experimentellen Analyse der Determination der Dorsoventralachse beim Seeigelkeim : II. Versuche mit zentrifugierten Eiern. . Wilhelm Roux Arch Entwickl Mech Org. 1933;127(1):323-338doi: 10.1007/BF01390721.
Lindahl, P. E. (1933). Zur experimentellen Analyse der Determination der Dorsoventralachse beim Seeigelkeim : II. Versuche mit zentrifugierten Eiern. . Wilhelm Roux' Archiv fur Entwicklungsmechanik der Organismen, 127(1), 323-338. https://doi.org/10.1007/BF01390721
Lindahl, Per Eric. "Zur experimentellen Analyse der Determination der Dorsoventralachse beim Seeigelkeim : II. Versuche mit zentrifugierten Eiern." . Wilhelm Roux' Archiv fur Entwicklungsmechanik der Organismen vol. 127,1 (1933): 323-338. doi: https://doi.org/10.1007/BF01390721
Lindahl PE. Zur experimentellen Analyse der Determination der Dorsoventralachse beim Seeigelkeim : II. Versuche mit zentrifugierten Eiern. . Wilhelm Roux Arch Entwickl Mech Org. 1933 Mar;127(1):323-338. doi: 10.1007/BF01390721. German. PMID: 28354403.
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[No title available]

Wilhelm Roux' Archiv fur Entwicklungsmechanik der Organismen

Lindahl PE, Stordal Å.
PMID: 28354510
Wilhelm Roux Arch Entwickl Mech Org. 1937 Jan;136(2):286-293. doi: 10.1007/BF00576703.

No abstract available.

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Lindahl PE, Stordal Å. über die Determination der Richtung der ersten Furche im Seeigelei. . Wilhelm Roux Arch Entwickl Mech Org. 1937;136(2):286-293doi: 10.1007/BF00576703.
Lindahl, P. E., & Stordal, �. �. (1937). über die Determination der Richtung der ersten Furche im Seeigelei. . Wilhelm Roux' Archiv fur Entwicklungsmechanik der Organismen, 136(2), 286-293. https://doi.org/10.1007/BF00576703
Lindahl, Per Eric, and Stordal, Åke. "über die Determination der Richtung der ersten Furche im Seeigelei." . Wilhelm Roux' Archiv fur Entwicklungsmechanik der Organismen vol. 136,2 (1937): 286-293. doi: https://doi.org/10.1007/BF00576703
Lindahl PE, Stordal Å. über die Determination der Richtung der ersten Furche im Seeigelei. . Wilhelm Roux Arch Entwickl Mech Org. 1937 Jan;136(2):286-293. doi: 10.1007/BF00576703. German. PMID: 28354510.
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Accurate prediction of X-ray pulse properties from a free-electron laser using machine learning.

Nature communications

Sanchez-Gonzalez A, Micaelli P, Olivier C, Barillot TR, Ilchen M, Lutman AA, Marinelli A, Maxwell T, Achner A, Agåker M, Berrah N, Bostedt C, Bozek JD, Buck J, Bucksbaum PH, Montero SC, Cooper B, Cryan JP, Dong M, Feifel R, Frasinski LJ, Fukuzawa H, Galler A, Hartmann G, Hartmann N, Helml W, Johnson AS, Knie A, Lindahl AO, Liu J, Motomura K, Mucke M, O'Grady C, Rubensson JE, Simpson ER, Squibb RJ, Såthe C, Ueda K, Vacher M, Walke DJ, Zhaunerchyk V, Coffee RN, Marangos JP.
PMID: 28580940
Nat Commun. 2017 Jun 05;8:15461. doi: 10.1038/ncomms15461.

Free-electron lasers providing ultra-short high-brightness pulses of X-ray radiation have great potential for a wide impact on science, and are a critical element for unravelling the structural dynamics of matter. To fully harness this potential, we must accurately know...

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Sanchez-Gonzalez A, Micaelli P, Olivier C, et al. Accurate prediction of X-ray pulse properties from a free-electron laser using machine learning. Nat Commun. 2017;8:15461doi: 10.1038/ncomms15461.
Sanchez-Gonzalez, A., Micaelli, P., Olivier, C., Barillot, T. R., Ilchen, M., Lutman, A. A., Marinelli, A., Maxwell, T., Achner, A., Agåker, M., Berrah, N., Bostedt, C., Bozek, J. D., Buck, J., Bucksbaum, P. H., Montero, S. C., Cooper, B., Cryan, J. P., Dong, M., Feifel, R., Frasinski, L. J., Fukuzawa, H., Galler, A., Hartmann, G., Hartmann, N., Helml, W., Johnson, A. S., Knie, A., Lindahl, A. O., Liu, J., Motomura, K., Mucke, M., O'Grady, C., Rubensson, J. E., Simpson, E. R., Squibb, R. J., Såthe, C., Ueda, K., Vacher, M., Walke, D. J., Zhaunerchyk, V., Coffee, R. N., & Marangos, J. P. (2017). Accurate prediction of X-ray pulse properties from a free-electron laser using machine learning. Nature communications, 815461. https://doi.org/10.1038/ncomms15461
Sanchez-Gonzalez, A, et al. "Accurate prediction of X-ray pulse properties from a free-electron laser using machine learning." Nature communications vol. 8 (2017): 15461. doi: https://doi.org/10.1038/ncomms15461
Sanchez-Gonzalez A, Micaelli P, Olivier C, Barillot TR, Ilchen M, Lutman AA, Marinelli A, Maxwell T, Achner A, Agåker M, Berrah N, Bostedt C, Bozek JD, Buck J, Bucksbaum PH, Montero SC, Cooper B, Cryan JP, Dong M, Feifel R, Frasinski LJ, Fukuzawa H, Galler A, Hartmann G, Hartmann N, Helml W, Johnson AS, Knie A, Lindahl AO, Liu J, Motomura K, Mucke M, O'Grady C, Rubensson JE, Simpson ER, Squibb RJ, Såthe C, Ueda K, Vacher M, Walke DJ, Zhaunerchyk V, Coffee RN, Marangos JP. Accurate prediction of X-ray pulse properties from a free-electron laser using machine learning. Nat Commun. 2017 Jun 05;8:15461. doi: 10.1038/ncomms15461. PMID: 28580940; PMCID: PMC5465316.
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Structures, Interconversions, and Spectroscopy of Iron Carbonyl Clusters with an Interstitial Carbide: Localized Metal Center Reduction by Overall Cluster Oxidation.

Inorganic chemistry

Kuppuswamy S, Wofford JD, Joseph C, Xie ZL, Ali AK, Lynch VM, Lindahl PA, Rose MJ.
PMID: 28605580
Inorg Chem. 2017 Jul 03;56(13):7575. doi: 10.1021/acs.inorgchem.7b01386. Epub 2017 Jun 12.

No abstract available.

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Kuppuswamy S, Wofford JD, Joseph C, et al. Structures, Interconversions, and Spectroscopy of Iron Carbonyl Clusters with an Interstitial Carbide: Localized Metal Center Reduction by Overall Cluster Oxidation. Inorg Chem. 2017;56(13):7575doi: 10.1021/acs.inorgchem.7b01386.
Kuppuswamy, S., Wofford, J. D., Joseph, C., Xie, Z. L., Ali, A. K., Lynch, V. M., Lindahl, P. A., & Rose, M. J. (2017). Structures, Interconversions, and Spectroscopy of Iron Carbonyl Clusters with an Interstitial Carbide: Localized Metal Center Reduction by Overall Cluster Oxidation. Inorganic chemistry, 56(13), 7575. https://doi.org/10.1021/acs.inorgchem.7b01386
Kuppuswamy, Subramaniam, et al. "Structures, Interconversions, and Spectroscopy of Iron Carbonyl Clusters with an Interstitial Carbide: Localized Metal Center Reduction by Overall Cluster Oxidation." Inorganic chemistry vol. 56,13 (2017): 7575. doi: https://doi.org/10.1021/acs.inorgchem.7b01386
Kuppuswamy S, Wofford JD, Joseph C, Xie ZL, Ali AK, Lynch VM, Lindahl PA, Rose MJ. Structures, Interconversions, and Spectroscopy of Iron Carbonyl Clusters with an Interstitial Carbide: Localized Metal Center Reduction by Overall Cluster Oxidation. Inorg Chem. 2017 Jul 03;56(13):7575. doi: 10.1021/acs.inorgchem.7b01386. Epub 2017 Jun 12. PMID: 28605580.
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Clinical Outcome 3 Years After Autologous Chondrocyte Implantation Does Not Correlate With the Expression of a Predefined Gene Marker Set in Chondrocytes Prior to Implantation but Is Associated With Critical Signaling Pathways.

Orthopaedic journal of sports medicine

Stenberg J, de Windt TS, Synnergren J, Hynsjö L, van der Lee J, Saris DB, Brittberg M, Peterson L, Lindahl A.
PMID: 26535366
Orthop J Sports Med. 2014 Sep 24;2(9):2325967114550781. doi: 10.1177/2325967114550781. eCollection 2014 Sep.

BACKGROUND: There is a need for tools to predict the chondrogenic potency of autologous cells for cartilage repair.PURPOSE: To evaluate previously proposed chondrogenic biomarkers and to identify new biomarkers in the chondrocyte transcriptome capable of predicting clinical success or...

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Stenberg J, de Windt TS, Synnergren J, et al. Clinical Outcome 3 Years After Autologous Chondrocyte Implantation Does Not Correlate With the Expression of a Predefined Gene Marker Set in Chondrocytes Prior to Implantation but Is Associated With Critical Signaling Pathways. Orthop J Sports Med. 2014;2(9):2325967114550781doi: 10.1177/2325967114550781.
Stenberg, J., de Windt, T. S., Synnergren, J., Hynsjö, L., van der Lee, J., Saris, D. B., Brittberg, M., Peterson, L., & Lindahl, A. (2014). Clinical Outcome 3 Years After Autologous Chondrocyte Implantation Does Not Correlate With the Expression of a Predefined Gene Marker Set in Chondrocytes Prior to Implantation but Is Associated With Critical Signaling Pathways. Orthopaedic journal of sports medicine, 2(9), 2325967114550781. https://doi.org/10.1177/2325967114550781
Stenberg, Johan, et al. "Clinical Outcome 3 Years After Autologous Chondrocyte Implantation Does Not Correlate With the Expression of a Predefined Gene Marker Set in Chondrocytes Prior to Implantation but Is Associated With Critical Signaling Pathways." Orthopaedic journal of sports medicine vol. 2,9 (2014): 2325967114550781. doi: https://doi.org/10.1177/2325967114550781
Stenberg J, de Windt TS, Synnergren J, Hynsjö L, van der Lee J, Saris DB, Brittberg M, Peterson L, Lindahl A. Clinical Outcome 3 Years After Autologous Chondrocyte Implantation Does Not Correlate With the Expression of a Predefined Gene Marker Set in Chondrocytes Prior to Implantation but Is Associated With Critical Signaling Pathways. Orthop J Sports Med. 2014 Sep 24;2(9):2325967114550781. doi: 10.1177/2325967114550781. eCollection 2014 Sep. PMID: 26535366; PMCID: PMC4555627.
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Showing 1 to 12 of 346 entries