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Distinguishing highly similar gene isoforms with a clustering-based bioinformatics analysis of PacBio single-molecule long reads.

BioData mining

Liang M, Raley C, Zheng X, Kutty G, Gogineni E, Sherman BT, Sun Q, Chen X, Skelly T, Jones K, Stephens R, Zhou B, Lau W, Johnson C, Imamichi T, Jiang M, Dewar R, Lempicki RA, Tran B, Kovacs JA, Huang DW.
PMID: 27051465
BioData Min. 2016 Apr 05;9:13. doi: 10.1186/s13040-016-0090-8. eCollection 2016.

BACKGROUND: Gene isoforms are commonly found in both prokaryotes and eukaryotes. Since each isoform may perform a specific function in response to changing environmental conditions, studying the dynamics of gene isoforms is important in understanding biological processes and disease...

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Liang M, Raley C, Zheng X, et al. Distinguishing highly similar gene isoforms with a clustering-based bioinformatics analysis of PacBio single-molecule long reads. BioData Min. 2016;9:13doi: 10.1186/s13040-016-0090-8.
Liang, M., Raley, C., Zheng, X., Kutty, G., Gogineni, E., Sherman, B. T., Sun, Q., Chen, X., Skelly, T., Jones, K., Stephens, R., Zhou, B., Lau, W., Johnson, C., Imamichi, T., Jiang, M., Dewar, R., Lempicki, R. A., Tran, B., Kovacs, J. A., & Huang, D. W. (2016). Distinguishing highly similar gene isoforms with a clustering-based bioinformatics analysis of PacBio single-molecule long reads. BioData mining, 913. https://doi.org/10.1186/s13040-016-0090-8
Liang, Ma, et al. "Distinguishing highly similar gene isoforms with a clustering-based bioinformatics analysis of PacBio single-molecule long reads." BioData mining vol. 9 (2016): 13. doi: https://doi.org/10.1186/s13040-016-0090-8
Liang M, Raley C, Zheng X, Kutty G, Gogineni E, Sherman BT, Sun Q, Chen X, Skelly T, Jones K, Stephens R, Zhou B, Lau W, Johnson C, Imamichi T, Jiang M, Dewar R, Lempicki RA, Tran B, Kovacs JA, Huang DW. Distinguishing highly similar gene isoforms with a clustering-based bioinformatics analysis of PacBio single-molecule long reads. BioData Min. 2016 Apr 05;9:13. doi: 10.1186/s13040-016-0090-8. eCollection 2016. PMID: 27051465; PMCID: PMC4820869.
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Multiple doping of CsI:Tl crystals and its effect on afterglow.

Radiation measurements

Ovechkina EE, Gaysinskiy V, Miller SR, Brecher C, Lempicki A, Nagarkar VV.
PMID: 18449339
Radiat Meas. 2007 May;42(4):541-544. doi: 10.1016/j.radmeas.2007.01.086.

Despite the acknowledged advantages of CsI:Tl in many scintillator applications, a characteristic property that undermines its use in high-speed radiographic and radionuclide imaging is the presence of a strong afterglow component in its scintillation decay. This causes pulse pileup...

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Ovechkina EE, Gaysinskiy V, Miller SR, et al. Multiple doping of CsI:Tl crystals and its effect on afterglow. Radiat Meas. 2007;42(4):541-544doi: 10.1016/j.radmeas.2007.01.086.
Ovechkina, E. E., Gaysinskiy, V., Miller, S. R., Brecher, C., Lempicki, A., & Nagarkar, V. V. (2007). Multiple doping of CsI:Tl crystals and its effect on afterglow. Radiation measurements, 42(4), 541-544. https://doi.org/10.1016/j.radmeas.2007.01.086
Ovechkina, E E, et al. "Multiple doping of CsI:Tl crystals and its effect on afterglow." Radiation measurements vol. 42,4 (2007): 541-544. doi: https://doi.org/10.1016/j.radmeas.2007.01.086
Ovechkina EE, Gaysinskiy V, Miller SR, Brecher C, Lempicki A, Nagarkar VV. Multiple doping of CsI:Tl crystals and its effect on afterglow. Radiat Meas. 2007 May;42(4):541-544. doi: 10.1016/j.radmeas.2007.01.086. PMID: 18449339; PMCID: PMC2170897.
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Comments on the paper by A. J. Bevolo and W. A. Barker.

Applied optics

Lempicki A, Samelson H.
PMID: 20048807
Appl Opt. 1966 Jan 01;5(1):168. doi: 10.1364/AO.5.000168.

No abstract available.

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Lempicki A, Samelson H. Comments on the paper by A. J. Bevolo and W. A. Barker. Appl Opt. 1966;5(1):168doi: 10.1364/AO.5.000168.
Lempicki, A., & Samelson, H. (1966). Comments on the paper by A. J. Bevolo and W. A. Barker. Applied optics, 5(1), 168. https://doi.org/10.1364/AO.5.000168
Lempicki, A, and Samelson, H. "Comments on the paper by A. J. Bevolo and W. A. Barker." Applied optics vol. 5,1 (1966): 168. doi: https://doi.org/10.1364/AO.5.000168
Lempicki A, Samelson H. Comments on the paper by A. J. Bevolo and W. A. Barker. Appl Opt. 1966 Jan 01;5(1):168. doi: 10.1364/AO.5.000168. PMID: 20048807.
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The prognostic importance of congruity of the hip joint in the reduction of residual dysplasia after successful conservative treatment of developmental luxation.

Ortopedia, traumatologia, rehabilitacja

Wierusz-Kozłowska M, Lempicki A, Kruczyński J.
PMID: 17676005
Ortop Traumatol Rehabil. 2004 Feb 28;6(1):21-33.

Background. Conservative treatment of developmental hip dislocation aims for stable reposition. However, after treatment a significant number of joints are not completely remodeled. The aim of our study was to determine which factors influence the direction of remodeling of...

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Wierusz-Kozłowska M, Lempicki A, Kruczyński J. The prognostic importance of congruity of the hip joint in the reduction of residual dysplasia after successful conservative treatment of developmental luxation. Ortop Traumatol Rehabil. 2004;6(1):21-33
Wierusz-Kozłowska, M., Lempicki, A., & Kruczyński, J. (2004). The prognostic importance of congruity of the hip joint in the reduction of residual dysplasia after successful conservative treatment of developmental luxation. Ortopedia, traumatologia, rehabilitacja, 6(1), 21-33.
Wierusz-Kozłowska, Małgorzata, et al. "The prognostic importance of congruity of the hip joint in the reduction of residual dysplasia after successful conservative treatment of developmental luxation." Ortopedia, traumatologia, rehabilitacja vol. 6,1 (2004): 21-33.
Wierusz-Kozłowska M, Lempicki A, Kruczyński J. The prognostic importance of congruity of the hip joint in the reduction of residual dysplasia after successful conservative treatment of developmental luxation. Ortop Traumatol Rehabil. 2004 Feb 28;6(1):21-33. PMID: 17676005.
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Specific heat of Cd1-xCoxS and Cd1-xCoxSe at low temperatures.

Physical review. B, Condensed matter

Crooker BC, Furdyna JK, Lewicki A, Miotkowski I, Schindler AI.
PMID: 9997972
Phys Rev B Condens Matter. 1991 Mar 01;43(7):5713-5718. doi: 10.1103/physrevb.43.5713.

No abstract available.

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Crooker BC, Furdyna JK, Lewicki A, et al. Specific heat of Cd1-xCoxS and Cd1-xCoxSe at low temperatures. Phys Rev B Condens Matter. 1991;43(7):5713-5718doi: 10.1103/physrevb.43.5713.
Crooker, B. C., Furdyna, J. K., Lewicki, A., Miotkowski, I., & Schindler, A. I. (1991). Specific heat of Cd1-xCoxS and Cd1-xCoxSe at low temperatures. Physical review. B, Condensed matter, 43(7), 5713-5718. https://doi.org/10.1103/physrevb.43.5713
Crooker, et al. "Specific heat of Cd1-xCoxS and Cd1-xCoxSe at low temperatures." Physical review. B, Condensed matter vol. 43,7 (1991): 5713-5718. doi: https://doi.org/10.1103/physrevb.43.5713
Crooker BC, Furdyna JK, Lewicki A, Miotkowski I, Schindler AI. Specific heat of Cd1-xCoxS and Cd1-xCoxSe at low temperatures. Phys Rev B Condens Matter. 1991 Mar 01;43(7):5713-5718. doi: 10.1103/physrevb.43.5713. PMID: 9997972.
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Exploring .

ZooKeys

Pieńkowska JR, Manganelli G, Giusti F, Hallgass A, Lesicki A.
PMID: 29904267
Zookeys. 2018 Jun 06;(765):1-41. doi: 10.3897/zookeys.765.24386. eCollection 2018.

Molecular analysis of nucleotide sequences of mitochondrial cytochrome oxidase subunit 1 (COI) and 16S ribosomal DNA (16SrDNA) as well as nuclear histone 3 (H3) and internal transcribed spacer 2 of rDNA (ITS2) gene fragments together with morphological analysis of...

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Pieńkowska JR, Manganelli G, Giusti F, et al. Exploring . Zookeys. 2018;(765):1-41doi: 10.3897/zookeys.765.24386.
Pieńkowska, J. R., Manganelli, G., Giusti, F., Hallgass, A., & Lesicki, A. (2018). Exploring . ZooKeys, (765), 1-41. https://doi.org/10.3897/zookeys.765.24386
Pieńkowska, Joanna R, et al. "Exploring ." ZooKeys vol. ,765 (2018): 1-41. doi: https://doi.org/10.3897/zookeys.765.24386
Pieńkowska JR, Manganelli G, Giusti F, Hallgass A, Lesicki A. Exploring . Zookeys. 2018 Jun 06;(765):1-41. doi: 10.3897/zookeys.765.24386. eCollection 2018. PMID: 29904267; PMCID: PMC5999686.
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Incidental Findings and How to Manage Them: Testis- A WFUMB Position Paper.

Ultrasound in medicine & biology

Lewicki A, Freeman S, Jędrzejczyk M, Dobruch J, Dong Y, Bertolotto M, Dietrich CF.
PMID: 34303560
Ultrasound Med Biol. 2021 Oct;47(10):2787-2802. doi: 10.1016/j.ultrasmedbio.2021.05.022. Epub 2021 Jul 22.

Testicular incidentalomas are non-palpable, asymptomatic lesions, most frequently detected on ultrasound examinations. Each incidentaloma should undergo a standardized diagnostic workup to exclude malignancy and recognize other potentially significant non-malignant conditions that may first present with an incidental finding on...

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Lewicki A, Freeman S, Jędrzejczyk M, et al. Incidental Findings and How to Manage Them: Testis- A WFUMB Position Paper. Ultrasound Med Biol. 2021;47(10):2787-2802doi: 10.1016/j.ultrasmedbio.2021.05.022.
Lewicki, A., Freeman, S., Jędrzejczyk, M., Dobruch, J., Dong, Y., Bertolotto, M., & Dietrich, C. F. (2021). Incidental Findings and How to Manage Them: Testis- A WFUMB Position Paper. Ultrasound in medicine & biology, 47(10), 2787-2802. https://doi.org/10.1016/j.ultrasmedbio.2021.05.022
Lewicki, Andrzej, et al. "Incidental Findings and How to Manage Them: Testis- A WFUMB Position Paper." Ultrasound in medicine & biology vol. 47,10 (2021): 2787-2802. doi: https://doi.org/10.1016/j.ultrasmedbio.2021.05.022
Lewicki A, Freeman S, Jędrzejczyk M, Dobruch J, Dong Y, Bertolotto M, Dietrich CF. Incidental Findings and How to Manage Them: Testis- A WFUMB Position Paper. Ultrasound Med Biol. 2021 Oct;47(10):2787-2802. doi: 10.1016/j.ultrasmedbio.2021.05.022. Epub 2021 Jul 22. PMID: 34303560.
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Unique and common elements of the role of peer support in the context of traditional mental health services.

Psychiatric rehabilitation journal

Crane DA, Lepicki T, Knudsen K.
PMID: 27159112
Psychiatr Rehabil J. 2016 Sep;39(3):282-8. doi: 10.1037/prj0000186. Epub 2016 May 09.

OBJECTIVE: The goal of this report is to clarify the unique role of peer support providers (PSPs) and define peer support as a distinct occupation in the context of traditional mental health services.METHOD: A systematic methodology was used to...

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Crane DA, Lepicki T, Knudsen K. Unique and common elements of the role of peer support in the context of traditional mental health services. Psychiatr Rehabil J. 2016;39(3):282-8doi: 10.1037/prj0000186.
Crane, D. A., Lepicki, T., & Knudsen, K. (2016). Unique and common elements of the role of peer support in the context of traditional mental health services. Psychiatric rehabilitation journal, 39(3), 282-8. https://doi.org/10.1037/prj0000186
Crane, Dushka A, et al. "Unique and common elements of the role of peer support in the context of traditional mental health services." Psychiatric rehabilitation journal vol. 39,3 (2016): 282-8. doi: https://doi.org/10.1037/prj0000186
Crane DA, Lepicki T, Knudsen K. Unique and common elements of the role of peer support in the context of traditional mental health services. Psychiatr Rehabil J. 2016 Sep;39(3):282-8. doi: 10.1037/prj0000186. Epub 2016 May 09. PMID: 27159112.
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Density-vague ecology.

Trends in ecology & evolution

Lomnicki A.
PMID: 21227822
Trends Ecol Evol. 1987 Mar;2(3):76. doi: 10.1016/0169-5347(87)90153-4.

No abstract available.

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Lomnicki A. Density-vague ecology. Trends Ecol Evol. 1987;2(3):76doi: 10.1016/0169-5347(87)90153-4.
Lomnicki, A. (1987). Density-vague ecology. Trends in ecology & evolution, 2(3), 76. https://doi.org/10.1016/0169-5347(87)90153-4
Lomnicki, A. "Density-vague ecology." Trends in ecology & evolution vol. 2,3 (1987): 76. doi: https://doi.org/10.1016/0169-5347(87)90153-4
Lomnicki A. Density-vague ecology. Trends Ecol Evol. 1987 Mar;2(3):76. doi: 10.1016/0169-5347(87)90153-4. PMID: 21227822.
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Detection of Vesicular Stomatitis Virus using a Capacitive Immunosensor.

Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference

Hanna D, Gross B, Lempicki E, Oakley B, Kandlikar S, Stryker G.
PMID: 17282235
Conf Proc IEEE Eng Med Biol Soc. 2005;2006:534-7. doi: 10.1109/IEMBS.2005.1616466.

This paper describes the detection of Vesicular Stomatitis Virus using a novel capacitive immunosensor technology, whereby the respective antibodies for the antigens were used as a means for chemical detection on separate sensors. Devices were fabricated using standard etching...

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Hanna D, Gross B, Lempicki E, et al. Detection of Vesicular Stomatitis Virus using a Capacitive Immunosensor. Conf Proc IEEE Eng Med Biol Soc. 2005;2006:534-7doi: 10.1109/IEMBS.2005.1616466.
Hanna, D., Gross, B., Lempicki, E., Oakley, B., Kandlikar, S., & Stryker, G. (2005). Detection of Vesicular Stomatitis Virus using a Capacitive Immunosensor. Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference, 2006534-7. https://doi.org/10.1109/IEMBS.2005.1616466
Hanna, Darrin, et al. "Detection of Vesicular Stomatitis Virus using a Capacitive Immunosensor." Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference vol. 2006 (2005): 534-7. doi: https://doi.org/10.1109/IEMBS.2005.1616466
Hanna D, Gross B, Lempicki E, Oakley B, Kandlikar S, Stryker G. Detection of Vesicular Stomatitis Virus using a Capacitive Immunosensor. Conf Proc IEEE Eng Med Biol Soc. 2005;2006:534-7. doi: 10.1109/IEMBS.2005.1616466. PMID: 17282235.
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Altered regulation of extrinsic apoptosis pathway in HCV-infected HCC cells enhances susceptibility to mapatumumab-induced apoptosis.

Hepatology research : the official journal of the Japan Society of Hepatology

Zhang X, Frank AC, Gille CM, Daucher M, Kabat J, Becker S, Lempicki RA, Cortez KJ, Polis MA, Subramanian GM, Kottilil S.
PMID: 19788693
Hepatol Res. 2009 Dec;39(12):1178-89. doi: 10.1111/j.1872-034X.2009.00568.x. Epub 2009 Sep 25.

BACKGROUND: Hepatitis C virus (HCV)-infected patients, including those co-infected with human immunodeficiency virus (HIV), are at increased risk of developing hepatocellular carcinoma (HCC). We evaluated the ability of agonistic human monoclonal antibodies to tumor necrosis factor-related apoptosis inducing ligand...

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Zhang X, Frank AC, Gille CM, et al. Altered regulation of extrinsic apoptosis pathway in HCV-infected HCC cells enhances susceptibility to mapatumumab-induced apoptosis. Hepatol Res. 2009;39(12):1178-89doi: 10.1111/j.1872-034X.2009.00568.x.
Zhang, X., Frank, A. C., Gille, C. M., Daucher, M., Kabat, J., Becker, S., Lempicki, R. A., Cortez, K. J., Polis, M. A., Subramanian, G. M., & Kottilil, S. (2009). Altered regulation of extrinsic apoptosis pathway in HCV-infected HCC cells enhances susceptibility to mapatumumab-induced apoptosis. Hepatology research : the official journal of the Japan Society of Hepatology, 39(12), 1178-89. https://doi.org/10.1111/j.1872-034X.2009.00568.x
Zhang, Xiaozhen, et al. "Altered regulation of extrinsic apoptosis pathway in HCV-infected HCC cells enhances susceptibility to mapatumumab-induced apoptosis." Hepatology research : the official journal of the Japan Society of Hepatology vol. 39,12 (2009): 1178-89. doi: https://doi.org/10.1111/j.1872-034X.2009.00568.x
Zhang X, Frank AC, Gille CM, Daucher M, Kabat J, Becker S, Lempicki RA, Cortez KJ, Polis MA, Subramanian GM, Kottilil S. Altered regulation of extrinsic apoptosis pathway in HCV-infected HCC cells enhances susceptibility to mapatumumab-induced apoptosis. Hepatol Res. 2009 Dec;39(12):1178-89. doi: 10.1111/j.1872-034X.2009.00568.x. Epub 2009 Sep 25. PMID: 19788693; PMCID: PMC7886285.
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The Kerr constant of selenium oxychloride.

Applied optics

Buhrer CF, Heller A, Lempicki A.
PMID: 20062150
Appl Opt. 1967 Jun 01;6(6):1141. doi: 10.1364/AO.6.001141.

No abstract available.

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Buhrer CF, Heller A, Lempicki A. The Kerr constant of selenium oxychloride. Appl Opt. 1967;6(6):1141doi: 10.1364/AO.6.001141.
Buhrer, C. F., Heller, A., & Lempicki, A. (1967). The Kerr constant of selenium oxychloride. Applied optics, 6(6), 1141. https://doi.org/10.1364/AO.6.001141
Buhrer, C F, et al. "The Kerr constant of selenium oxychloride." Applied optics vol. 6,6 (1967): 1141. doi: https://doi.org/10.1364/AO.6.001141
Buhrer CF, Heller A, Lempicki A. The Kerr constant of selenium oxychloride. Appl Opt. 1967 Jun 01;6(6):1141. doi: 10.1364/AO.6.001141. PMID: 20062150.
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