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Production and analytic bioinformatics for next-generation DNA sequencing.

Methods in molecular biology (Clifton, N.J.)

Allcock RJ.
PMID: 24870128
Methods Mol Biol. 2014;1168:17-29. doi: 10.1007/978-1-4939-0847-9_2.

The bioinformatics requirements within the clinical environment are very specific, and analytic techniques need to be fit for purpose, robust, and predictable. At the same time, the bewildering amount of information produced during these analyses needs to be carefully...

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Allcock RJ. Production and analytic bioinformatics for next-generation DNA sequencing. Methods Mol Biol. 2014;1168:17-29doi: 10.1007/978-1-4939-0847-9_2.
Allcock, R. J. (2014). Production and analytic bioinformatics for next-generation DNA sequencing. Methods in molecular biology (Clifton, N.J.), 116817-29. https://doi.org/10.1007/978-1-4939-0847-9_2
Allcock, Richard James Nigel. "Production and analytic bioinformatics for next-generation DNA sequencing." Methods in molecular biology (Clifton, N.J.) vol. 1168 (2014): 17-29. doi: https://doi.org/10.1007/978-1-4939-0847-9_2
Allcock RJ. Production and analytic bioinformatics for next-generation DNA sequencing. Methods Mol Biol. 2014;1168:17-29. doi: 10.1007/978-1-4939-0847-9_2. PMID: 24870128.
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Isolation and characterization of 13 microsatellites for the rare endemic shrub Tetratheca erubescens (Elaeocarpaceae).

Applications in plant sciences

Anthony JM, Allcock RJ, Krauss SL.
PMID: 26949577
Appl Plant Sci. 2016 Feb 09;4(2). doi: 10.3732/apps.1500102. eCollection 2016 Feb.

PREMISE OF THE STUDY: Microsatellite markers were developed for the rare Tetratheca erubescens (Elaeocarpaceae) to assess genetic diversity and spatial structuring.METHODS AND RESULTS: We generated ca. 2.7 million sequence reads using a Personal Genome Machine (PGM) semiconductor sequencer. Using...

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Anthony JM, Allcock RJ, Krauss SL. Isolation and characterization of 13 microsatellites for the rare endemic shrub Tetratheca erubescens (Elaeocarpaceae). Appl Plant Sci. 2016;4(2)doi: 10.3732/apps.1500102.
Anthony, J. M., Allcock, R. J., & Krauss, S. L. (2016). Isolation and characterization of 13 microsatellites for the rare endemic shrub Tetratheca erubescens (Elaeocarpaceae). Applications in plant sciences, 4(2), . https://doi.org/10.3732/apps.1500102
Anthony, Janet M, et al. "Isolation and characterization of 13 microsatellites for the rare endemic shrub Tetratheca erubescens (Elaeocarpaceae)." Applications in plant sciences vol. 4,2 (2016). doi: https://doi.org/10.3732/apps.1500102
Anthony JM, Allcock RJ, Krauss SL. Isolation and characterization of 13 microsatellites for the rare endemic shrub Tetratheca erubescens (Elaeocarpaceae). Appl Plant Sci. 2016 Feb 09;4(2). doi: 10.3732/apps.1500102. eCollection 2016 Feb. PMID: 26949577; PMCID: PMC4760749.
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Specialism sadness.

Nursing standard (Royal College of Nursing (Great Britain) : 1987)

Allcock D.
PMID: 27652877
Nurs Stand. 1990 Nov 07;5(7):41-42. doi: 10.7748/ns.5.7.41.s38.

I am somewhat saddened by Richard Miller's apparently well researched article ('Abolish RMN Specialisms', ! Nursing Standard October 24).

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Allcock D. Specialism sadness. Nurs Stand. 1990;5(7):41-42doi: 10.7748/ns.5.7.41.s38.
Allcock, D. (1990). Specialism sadness. Nursing standard (Royal College of Nursing (Great Britain) : 1987), 5(7), 41-42. https://doi.org/10.7748/ns.5.7.41.s38
Allcock, Debbie. "Specialism sadness." Nursing standard (Royal College of Nursing (Great Britain) : 1987) vol. 5,7 (1990): 41-42. doi: https://doi.org/10.7748/ns.5.7.41.s38
Allcock D. Specialism sadness. Nurs Stand. 1990 Nov 07;5(7):41-42. doi: 10.7748/ns.5.7.41.s38. PMID: 27652877.
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Poly[bis(2,2,2-trifluoroethoxy)phosphazene] superhydrophobic nanofibers.

Langmuir : the ACS journal of surfaces and colloids

Singh A, Steely L, Allcock HR.
PMID: 16316089
Langmuir. 2005 Dec 06;21(25):11604-7. doi: 10.1021/la052110v.

Nanofibers of poly[bis(2,2,2-trifluoroethoxy)phosphazene] were produced by electrospinning from solutions in tetrahydrofuran, methylethyl ketone, and acetone. The fiber diameter varied from 80 nm to 1.4 microm by changes in the concentration of the polymer solution. The electrospun nonwoven mats showed...

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Singh A, Steely L, Allcock HR. Poly[bis(2,2,2-trifluoroethoxy)phosphazene] superhydrophobic nanofibers. Langmuir. 2005;21(25):11604-7doi: 10.1021/la052110v.
Singh, A., Steely, L., & Allcock, H. R. (2005). Poly[bis(2,2,2-trifluoroethoxy)phosphazene] superhydrophobic nanofibers. Langmuir : the ACS journal of surfaces and colloids, 21(25), 11604-7. https://doi.org/10.1021/la052110v
Singh, Anurima, et al. "Poly[bis(2,2,2-trifluoroethoxy)phosphazene] superhydrophobic nanofibers." Langmuir : the ACS journal of surfaces and colloids vol. 21,25 (2005): 11604-7. doi: https://doi.org/10.1021/la052110v
Singh A, Steely L, Allcock HR. Poly[bis(2,2,2-trifluoroethoxy)phosphazene] superhydrophobic nanofibers. Langmuir. 2005 Dec 06;21(25):11604-7. doi: 10.1021/la052110v. PMID: 16316089.
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Transformation of Clostridium acetobutylicum Protoplasts with Bacteriophage DNA.

Applied and environmental microbiology

Reid SJ, Allcock ER, Jones DT, Woods DR.
PMID: 16346174
Appl Environ Microbiol. 1983 Jan;45(1):305-7. doi: 10.1128/aem.45.1.305-307.1983.

Techniques for the transformation of Clostridium acetobutylicum protoplasts with bacteriophage DNA are described. Transformation required regeneration of protoplasts and a 2-h eclipse period.

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Reid SJ, Allcock ER, Jones DT, et al. Transformation of Clostridium acetobutylicum Protoplasts with Bacteriophage DNA. Appl Environ Microbiol. 1983;45(1):305-7doi: 10.1128/aem.45.1.305-307.1983.
Reid, S. J., Allcock, E. R., Jones, D. T., & Woods, D. R. (1983). Transformation of Clostridium acetobutylicum Protoplasts with Bacteriophage DNA. Applied and environmental microbiology, 45(1), 305-7. https://doi.org/10.1128/aem.45.1.305-307.1983
Reid, S J, et al. "Transformation of Clostridium acetobutylicum Protoplasts with Bacteriophage DNA." Applied and environmental microbiology vol. 45,1 (1983): 305-7. doi: https://doi.org/10.1128/aem.45.1.305-307.1983
Reid SJ, Allcock ER, Jones DT, Woods DR. Transformation of Clostridium acetobutylicum Protoplasts with Bacteriophage DNA. Appl Environ Microbiol. 1983 Jan;45(1):305-7. doi: 10.1128/aem.45.1.305-307.1983. PMID: 16346174; PMCID: PMC242271.
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Plasma surface functionalization of poly[bis(2,2,2-trifluoroethoxy)phosphazene] films and nanofibers.

Langmuir : the ACS journal of surfaces and colloids

Allcock HR, Steely LB, Kim SH, Kim JH, Kang BK.
PMID: 17590030
Langmuir. 2007 Jul 17;23(15):8103-7. doi: 10.1021/la700840j. Epub 2007 Jun 23.

Polyphosphazenes are a class of hybrid organic-inorganic macromolecules with high thermo-oxidative stability and good solubility in many solvents. Fluoroalkoxy phosphazene polymers also have high surface hydrophobicity. A method is described to tune this surface property while maintaining the advantageous...

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Allcock HR, Steely LB, Kim SH, et al. Plasma surface functionalization of poly[bis(2,2,2-trifluoroethoxy)phosphazene] films and nanofibers. Langmuir. 2007;23(15):8103-7doi: 10.1021/la700840j.
Allcock, H. R., Steely, L. B., Kim, S. H., Kim, J. H., & Kang, B. K. (2007). Plasma surface functionalization of poly[bis(2,2,2-trifluoroethoxy)phosphazene] films and nanofibers. Langmuir : the ACS journal of surfaces and colloids, 23(15), 8103-7. https://doi.org/10.1021/la700840j
Allcock, Harry R, et al. "Plasma surface functionalization of poly[bis(2,2,2-trifluoroethoxy)phosphazene] films and nanofibers." Langmuir : the ACS journal of surfaces and colloids vol. 23,15 (2007): 8103-7. doi: https://doi.org/10.1021/la700840j
Allcock HR, Steely LB, Kim SH, Kim JH, Kang BK. Plasma surface functionalization of poly[bis(2,2,2-trifluoroethoxy)phosphazene] films and nanofibers. Langmuir. 2007 Jul 17;23(15):8103-7. doi: 10.1021/la700840j. Epub 2007 Jun 23. PMID: 17590030.
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Characterization of water in proton-conducting membranes by deuterium NMR T1 relaxation.

The journal of physical chemistry. B

Lee DK, Saito T, Benesi AJ, Hickner MA, Allcock HR.
PMID: 21218813
J Phys Chem B. 2011 Feb 10;115(5):776-83. doi: 10.1021/jp106757b. Epub 2011 Jan 10.

(2)H T(1) NMR relaxation was used to characterize the molecular motion of deuterated water ((2)H(2)O) in Aquivion E87-05, Nafion 117, and sulfonated-Radel proton-exchange membranes. The presence of bound water with solid character was confirmed by the dependence of the...

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Lee DK, Saito T, Benesi AJ, et al. Characterization of water in proton-conducting membranes by deuterium NMR T1 relaxation. J Phys Chem B. 2011;115(5):776-83doi: 10.1021/jp106757b.
Lee, D. K., Saito, T., Benesi, A. J., Hickner, M. A., & Allcock, H. R. (2011). Characterization of water in proton-conducting membranes by deuterium NMR T1 relaxation. The journal of physical chemistry. B, 115(5), 776-83. https://doi.org/10.1021/jp106757b
Lee, David K, et al. "Characterization of water in proton-conducting membranes by deuterium NMR T1 relaxation." The journal of physical chemistry. B vol. 115,5 (2011): 776-83. doi: https://doi.org/10.1021/jp106757b
Lee DK, Saito T, Benesi AJ, Hickner MA, Allcock HR. Characterization of water in proton-conducting membranes by deuterium NMR T1 relaxation. J Phys Chem B. 2011 Feb 10;115(5):776-83. doi: 10.1021/jp106757b. Epub 2011 Jan 10. PMID: 21218813.
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Clostridium acetobutylicum Protoplast Formation and Regeneration.

Applied and environmental microbiology

Allcock ER, Reid SJ, Jones DT, Woods DR.
PMID: 16345980
Appl Environ Microbiol. 1982 Mar;43(3):719-21. doi: 10.1128/aem.43.3.719-721.1982.

Techniques and media for the production and regeneration of stable Clostridium acetobutylicum protoplasts are described.

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Allcock ER, Reid SJ, Jones DT, et al. Clostridium acetobutylicum Protoplast Formation and Regeneration. Appl Environ Microbiol. 1982;43(3):719-21doi: 10.1128/aem.43.3.719-721.1982.
Allcock, E. R., Reid, S. J., Jones, D. T., & Woods, D. R. (1982). Clostridium acetobutylicum Protoplast Formation and Regeneration. Applied and environmental microbiology, 43(3), 719-21. https://doi.org/10.1128/aem.43.3.719-721.1982
Allcock, E R, et al. "Clostridium acetobutylicum Protoplast Formation and Regeneration." Applied and environmental microbiology vol. 43,3 (1982): 719-21. doi: https://doi.org/10.1128/aem.43.3.719-721.1982
Allcock ER, Reid SJ, Jones DT, Woods DR. Clostridium acetobutylicum Protoplast Formation and Regeneration. Appl Environ Microbiol. 1982 Mar;43(3):719-21. doi: 10.1128/aem.43.3.719-721.1982. PMID: 16345980; PMCID: PMC241900.
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A panel of microsatellite loci from two species of octopus, Pareledone turqueti (Joubin, 1905) and Pareledone charcoti (Joubin, 1905).

Molecular ecology resources

Strugnell JM, Allcock AL, Watts PC.
PMID: 21564889
Mol Ecol Resour. 2009 Jul;9(4):1239-42. doi: 10.1111/j.1755-0998.2009.02617.x. Epub 2009 Mar 17.

Eighteen dinucleotide microsatellite loci were isolated from two octopus species, Pareledone turqueti and Pareledone charcoti, which are endemic to the Southern Ocean. Genetic diversity was assessed in samples of P. charcoti and P. turqueti from Elephant Island and Shag...

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Strugnell JM, Allcock AL, Watts PC. A panel of microsatellite loci from two species of octopus, Pareledone turqueti (Joubin, 1905) and Pareledone charcoti (Joubin, 1905). Mol Ecol Resour. 2009;9(4):1239-42doi: 10.1111/j.1755-0998.2009.02617.x.
Strugnell, J. M., Allcock, A. L., & Watts, P. C. (2009). A panel of microsatellite loci from two species of octopus, Pareledone turqueti (Joubin, 1905) and Pareledone charcoti (Joubin, 1905). Molecular ecology resources, 9(4), 1239-42. https://doi.org/10.1111/j.1755-0998.2009.02617.x
Strugnell, Jan M, et al. "A panel of microsatellite loci from two species of octopus, Pareledone turqueti (Joubin, 1905) and Pareledone charcoti (Joubin, 1905)." Molecular ecology resources vol. 9,4 (2009): 1239-42. doi: https://doi.org/10.1111/j.1755-0998.2009.02617.x
Strugnell JM, Allcock AL, Watts PC. A panel of microsatellite loci from two species of octopus, Pareledone turqueti (Joubin, 1905) and Pareledone charcoti (Joubin, 1905). Mol Ecol Resour. 2009 Jul;9(4):1239-42. doi: 10.1111/j.1755-0998.2009.02617.x. Epub 2009 Mar 17. PMID: 21564889.
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Complete coding sequences of three members of the kokobera group of flaviviruses.

Genome announcements

Warrilow D, Hall-Mendelin S, Hobson-Peters J, Prow NA, Allcock R, Hall RA.
PMID: 25237018
Genome Announc. 2014 Sep 18;2(5). doi: 10.1128/genomeA.00890-14.

The Kokobera group of flaviviruses circulates in Australia and Papua, New Guinea, and has been associated with occasional human polyarticular disease. To facilitate future studies to identify virulence determinants, the complete coding regions of the Stratford virus, and isolates...

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Warrilow D, Hall-Mendelin S, Hobson-Peters J, et al. Complete coding sequences of three members of the kokobera group of flaviviruses. Genome Announc. 2014;2(5)doi: 10.1128/genomeA.00890-14.
Warrilow, D., Hall-Mendelin, S., Hobson-Peters, J., Prow, N. A., Allcock, R., & Hall, R. A. (2014). Complete coding sequences of three members of the kokobera group of flaviviruses. Genome announcements, 2(5), . https://doi.org/10.1128/genomeA.00890-14
Warrilow, David, et al. "Complete coding sequences of three members of the kokobera group of flaviviruses." Genome announcements vol. 2,5 (2014). doi: https://doi.org/10.1128/genomeA.00890-14
Warrilow D, Hall-Mendelin S, Hobson-Peters J, Prow NA, Allcock R, Hall RA. Complete coding sequences of three members of the kokobera group of flaviviruses. Genome Announc. 2014 Sep 18;2(5). doi: 10.1128/genomeA.00890-14. PMID: 25237018; PMCID: PMC4172267.
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Evolution of baryon number density during the cosmic quark-hadron phase transition.

Physical review. D, Particles and fields

Alcock CR, Kajino T, Mathews GJ, Sumiyoshi K.
PMID: 10012809
Phys Rev D Part Fields. 1990 Dec 15;42(12):3963-3968. doi: 10.1103/physrevd.42.3963.

No abstract available.

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Alcock CR, Kajino T, Mathews GJ, et al. Evolution of baryon number density during the cosmic quark-hadron phase transition. Phys Rev D Part Fields. 1990;42(12):3963-3968doi: 10.1103/physrevd.42.3963.
Alcock, C. R., Kajino, T., Mathews, G. J., & Sumiyoshi, K. (1990). Evolution of baryon number density during the cosmic quark-hadron phase transition. Physical review. D, Particles and fields, 42(12), 3963-3968. https://doi.org/10.1103/physrevd.42.3963
Alcock, et al. "Evolution of baryon number density during the cosmic quark-hadron phase transition." Physical review. D, Particles and fields vol. 42,12 (1990): 3963-3968. doi: https://doi.org/10.1103/physrevd.42.3963
Alcock CR, Kajino T, Mathews GJ, Sumiyoshi K. Evolution of baryon number density during the cosmic quark-hadron phase transition. Phys Rev D Part Fields. 1990 Dec 15;42(12):3963-3968. doi: 10.1103/physrevd.42.3963. PMID: 10012809.
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Late-time dissipation of primordial baryon-number fluctuations and nucleosynthesis.

Physical review letters

Alcock CR, Dearborn DS, Fuller GM, Mathews GJ, Meyer BS.
PMID: 10041763
Phys Rev Lett. 1990 May 28;64(22):2607-2610. doi: 10.1103/PhysRevLett.64.2607.

No abstract available.

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Alcock CR, Dearborn DS, Fuller GM, et al. Late-time dissipation of primordial baryon-number fluctuations and nucleosynthesis. Phys Rev Lett. 1990;64(22):2607-2610doi: 10.1103/PhysRevLett.64.2607.
Alcock, C. R., Dearborn, D. S., Fuller, G. M., Mathews, G. J., & Meyer, B. S. (1990). Late-time dissipation of primordial baryon-number fluctuations and nucleosynthesis. Physical review letters, 64(22), 2607-2610. https://doi.org/10.1103/PhysRevLett.64.2607
Alcock, et al. "Late-time dissipation of primordial baryon-number fluctuations and nucleosynthesis." Physical review letters vol. 64,22 (1990): 2607-2610. doi: https://doi.org/10.1103/PhysRevLett.64.2607
Alcock CR, Dearborn DS, Fuller GM, Mathews GJ, Meyer BS. Late-time dissipation of primordial baryon-number fluctuations and nucleosynthesis. Phys Rev Lett. 1990 May 28;64(22):2607-2610. doi: 10.1103/PhysRevLett.64.2607. PMID: 10041763.
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Showing 1 to 12 of 114 entries