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Analysis of environmental stress response on the proteome level.

Mass spectrometry reviews

Nesatyy VJ, Suter MJ.
PMID: 18553564
Mass Spectrom Rev. 2008 Nov-Dec;27(6):556-74. doi: 10.1002/mas.20177.

Thousands of man-made chemicals are annually released into the environment by agriculture, transport, industries, and other human activities. In general, chemical analysis of environmental samples used to assess the pollution status of a specific ecosystem is complicated by the...

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Nesatyy VJ, Suter MJ. Analysis of environmental stress response on the proteome level. Mass Spectrom Rev. 2008;27(6):556-74doi: 10.1002/mas.20177.
Nesatyy, V. J., & Suter, M. J. (2008). Analysis of environmental stress response on the proteome level. Mass spectrometry reviews, 27(6), 556-74. https://doi.org/10.1002/mas.20177
Nesatyy, Victor J, and Suter, Marc J-F. "Analysis of environmental stress response on the proteome level." Mass spectrometry reviews vol. 27,6 (2008): 556-74. doi: https://doi.org/10.1002/mas.20177
Nesatyy VJ, Suter MJ. Analysis of environmental stress response on the proteome level. Mass Spectrom Rev. 2008 Nov-Dec;27(6):556-74. doi: 10.1002/mas.20177. PMID: 18553564.
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Screening we can believe in.

Nature chemical biology

[No authors listed]
PMID: 19219008
Nat Chem Biol. 2009 Mar;5(3):127. doi: 10.1038/nchembio0309-127.

Providers and users of chemical libraries must adopt quality and reporting standards to advance the impact of small-molecule high-throughput screening.

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Screening we can believe in. Nat Chem Biol. 2009;5(3):127doi: 10.1038/nchembio0309-127.
(2009). Screening we can believe in. Nature chemical biology, 5(3), 127. https://doi.org/10.1038/nchembio0309-127
"Screening we can believe in." Nature chemical biology vol. 5,3 (2009): 127. doi: https://doi.org/10.1038/nchembio0309-127
Screening we can believe in. Nat Chem Biol. 2009 Mar;5(3):127. doi: 10.1038/nchembio0309-127. PMID: 19219008.
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Proteomics.

Journal of biomedicine & biotechnology

Garcia BA, Cooper HJ, Dorrestein PC, Tang K, Ueberheide BM.
PMID: 21541239
J Biomed Biotechnol. 2010;2010:453045. doi: 10.1155/2010/453045. Epub 2011 Mar 24.

No abstract available.

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Garcia BA, Cooper HJ, Dorrestein PC, et al. Proteomics. J Biomed Biotechnol. 2011;2010:453045doi: 10.1155/2010/453045.
Garcia, B. A., Cooper, H. J., Dorrestein, P. C., Tang, K., & Ueberheide, B. M. (2010). Proteomics. Journal of biomedicine & biotechnology, 2010453045. https://doi.org/10.1155/2010/453045
Garcia, Benjamin A, et al. "Proteomics." Journal of biomedicine & biotechnology vol. 2010 (2010): 453045. doi: https://doi.org/10.1155/2010/453045
Garcia BA, Cooper HJ, Dorrestein PC, Tang K, Ueberheide BM. Proteomics. J Biomed Biotechnol. 2010;2010:453045. doi: 10.1155/2010/453045. Epub 2011 Mar 24. PMID: 21541239; PMCID: PMC3085213.
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Proteomics and human embryonic stem cells.

Stem cell research

Van Hoof D, Heck AJ, Krijgsveld J, Mummery CL.
PMID: 19383398
Stem Cell Res. 2008 Sep;1(3):169-82. doi: 10.1016/j.scr.2008.05.003. Epub 2008 May 29.

The derivation of human embryonic stem cells (hESCs) brought cell therapy-based regenerative medicine significantly closer to clinical application. However, expansion of undifferentiated cells and their directed differentiation in vitro have proven difficult to control. This is mainly because of...

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Van Hoof D, Heck AJ, Krijgsveld J, et al. Proteomics and human embryonic stem cells. Stem Cell Res. 2008;1(3):169-82doi: 10.1016/j.scr.2008.05.003.
Van Hoof, D., Heck, A. J., Krijgsveld, J., & Mummery, C. L. (2008). Proteomics and human embryonic stem cells. Stem cell research, 1(3), 169-82. https://doi.org/10.1016/j.scr.2008.05.003
Van Hoof, Dennis, et al. "Proteomics and human embryonic stem cells." Stem cell research vol. 1,3 (2008): 169-82. doi: https://doi.org/10.1016/j.scr.2008.05.003
Van Hoof D, Heck AJ, Krijgsveld J, Mummery CL. Proteomics and human embryonic stem cells. Stem Cell Res. 2008 Sep;1(3):169-82. doi: 10.1016/j.scr.2008.05.003. Epub 2008 May 29. PMID: 19383398.
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Using the PRIDE proteomics identifications database for knowledge discovery and data analysis.

Methods in molecular biology (Clifton, N.J.)

Jones P, Martens L.
PMID: 20013379
Methods Mol Biol. 2010;604:297-307. doi: 10.1007/978-1-60761-444-9_20.

The PRIDE Proteomics Identifications Database provides users with the ability to explore and compare mass spectrometry-based proteomics experiments that reveal details of the protein expression found in a broad range of taxonomic groups, tissues and disease states. A PRIDE...

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Jones P, Martens L. Using the PRIDE proteomics identifications database for knowledge discovery and data analysis. Methods Mol Biol. 2010;604:297-307doi: 10.1007/978-1-60761-444-9_20.
Jones, P., & Martens, L. (2010). Using the PRIDE proteomics identifications database for knowledge discovery and data analysis. Methods in molecular biology (Clifton, N.J.), 604297-307. https://doi.org/10.1007/978-1-60761-444-9_20
Jones, Philip, and Martens, Lennart. "Using the PRIDE proteomics identifications database for knowledge discovery and data analysis." Methods in molecular biology (Clifton, N.J.) vol. 604 (2010): 297-307. doi: https://doi.org/10.1007/978-1-60761-444-9_20
Jones P, Martens L. Using the PRIDE proteomics identifications database for knowledge discovery and data analysis. Methods Mol Biol. 2010;604:297-307. doi: 10.1007/978-1-60761-444-9_20. PMID: 20013379.
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Growing trend of CE at the omics level: the frontier of systems biology.

Electrophoresis

Oh E, Hasan MN, Jamshed M, Park SH, Hong HM, Song EJ, Yoo YS.
PMID: 20039294
Electrophoresis. 2010 Jan;31(1):74-92. doi: 10.1002/elps.200900410.

In a novel attempt to comprehend the complexity of life, systems biology has recently emerged as a state-of-the-art approach for biological research in contrast to the reductionist approaches that have been used in molecular cell biology since the 1950s....

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Oh E, Hasan MN, Jamshed M, et al. Growing trend of CE at the omics level: the frontier of systems biology. Electrophoresis. 2010;31(1):74-92doi: 10.1002/elps.200900410.
Oh, E., Hasan, M. N., Jamshed, M., Park, S. H., Hong, H. M., Song, E. J., & Yoo, Y. S. (2010). Growing trend of CE at the omics level: the frontier of systems biology. Electrophoresis, 31(1), 74-92. https://doi.org/10.1002/elps.200900410
Oh, Eulsik, et al. "Growing trend of CE at the omics level: the frontier of systems biology." Electrophoresis vol. 31,1 (2010): 74-92. doi: https://doi.org/10.1002/elps.200900410
Oh E, Hasan MN, Jamshed M, Park SH, Hong HM, Song EJ, Yoo YS. Growing trend of CE at the omics level: the frontier of systems biology. Electrophoresis. 2010 Jan;31(1):74-92. doi: 10.1002/elps.200900410. PMID: 20039294.
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[Application of two-dimensional liquid chromatography coupled with mass spectrometry for the separation of active compounds in Gegen Qinlian decoction].

Se pu = Chinese journal of chromatography

Guo F, Wang Y, Wang R, Yan C.
PMID: 18438018
Se Pu. 2008 Jan;26(1):15-21.

An system of two-dimensional liquid chromatography (2D-LC) coupled with mass spectrometry was developed for the separation of components in Gegen Qinlian decoction, a complex traditional Chinese medicine. A CN column was used in the first dimensional chromatography, with gradient...

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Guo F, Wang Y, Wang R, et al. [Application of two-dimensional liquid chromatography coupled with mass spectrometry for the separation of active compounds in Gegen Qinlian decoction]. Se Pu. 2008;26(1):15-21
Guo, F., Wang, Y., Wang, R., & Yan, C. (2008). [Application of two-dimensional liquid chromatography coupled with mass spectrometry for the separation of active compounds in Gegen Qinlian decoction]. Se pu = Chinese journal of chromatography, 26(1), 15-21.
Guo, Fei, et al. "[Application of two-dimensional liquid chromatography coupled with mass spectrometry for the separation of active compounds in Gegen Qinlian decoction]." Se pu = Chinese journal of chromatography vol. 26,1 (2008): 15-21.
Guo F, Wang Y, Wang R, Yan C. [Application of two-dimensional liquid chromatography coupled with mass spectrometry for the separation of active compounds in Gegen Qinlian decoction]. Se Pu. 2008 Jan;26(1):15-21. Chinese. PMID: 18438018.
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mSpecs: a software tool for the administration and editing of mass spectral libraries in the field of metabolomics.

BMC bioinformatics

Thielen B, Heinen S, Schomburg D.
PMID: 19624850
BMC Bioinformatics. 2009 Jul 22;10:229. doi: 10.1186/1471-2105-10-229.

BACKGROUND: Metabolome analysis with GC/MS has meanwhile been established as one of the "omics" techniques. Compound identification is done by comparison of the MS data with compound libraries. Mass spectral libraries in the field of metabolomics ought to connect...

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Thielen B, Heinen S, Schomburg D. mSpecs: a software tool for the administration and editing of mass spectral libraries in the field of metabolomics. BMC Bioinformatics. 2009;10:229doi: 10.1186/1471-2105-10-229.
Thielen, B., Heinen, S., & Schomburg, D. (2009). mSpecs: a software tool for the administration and editing of mass spectral libraries in the field of metabolomics. BMC bioinformatics, 10229. https://doi.org/10.1186/1471-2105-10-229
Thielen, Bernhard, et al. "mSpecs: a software tool for the administration and editing of mass spectral libraries in the field of metabolomics." BMC bioinformatics vol. 10 (2009): 229. doi: https://doi.org/10.1186/1471-2105-10-229
Thielen B, Heinen S, Schomburg D. mSpecs: a software tool for the administration and editing of mass spectral libraries in the field of metabolomics. BMC Bioinformatics. 2009 Jul 22;10:229. doi: 10.1186/1471-2105-10-229. PMID: 19624850; PMCID: PMC2731052.
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Microdissecting the proteome.

Proteomics

von Eggeling F, Melle C, Ernst G.
PMID: 17639602
Proteomics. 2007 Aug;7(16):2729-37. doi: 10.1002/pmic.200700079.

The complexity of the proteome is extremely high, because every organ or even a part of it can differ considerably in its protein composition. Performing proteomic studies therefore means to separate these functional different tissue areas before analysis. Otherwise...

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von Eggeling F, Melle C, Ernst G. Microdissecting the proteome. Proteomics. 2007;7(16):2729-37doi: 10.1002/pmic.200700079.
von Eggeling, F., Melle, C., & Ernst, G. (2007). Microdissecting the proteome. Proteomics, 7(16), 2729-37. https://doi.org/10.1002/pmic.200700079
von Eggeling, Ferdinand, et al. "Microdissecting the proteome." Proteomics vol. 7,16 (2007): 2729-37. doi: https://doi.org/10.1002/pmic.200700079
von Eggeling F, Melle C, Ernst G. Microdissecting the proteome. Proteomics. 2007 Aug;7(16):2729-37. doi: 10.1002/pmic.200700079. PMID: 17639602.
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5th HUPO BPP Bioinformatics Meeting at the European Bioinformatics Institute in Hinxton, UK--Setting the analysis frame.

Proteomics

Stephan C, Hamacher M, Blüggel M, Körting G, Chamrad D, Scheer C, Marcus K, Reidegeld KA, Lohaus C, Schäfer H, Martens L, Jones P, Müller M, Auyeung K, Taylor C, Binz PA, Thiele H, Parkinson D, Meyer HE, Apweiler R.
PMID: 16167371
Proteomics. 2005 Sep;5(14):3560-2. doi: 10.1002/pmic.200500580.

The Bioinformatics Committee of the HUPO Brain Proteome Project (HUPO BPP) meets regularly to execute the post-lab analyses of the data produced in the HUPO BPP pilot studies. On July 7, 2005 the members came together for the 5th...

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Stephan C, Hamacher M, Blüggel M, et al. 5th HUPO BPP Bioinformatics Meeting at the European Bioinformatics Institute in Hinxton, UK--Setting the analysis frame. Proteomics. 2005;5(14):3560-2doi: 10.1002/pmic.200500580.
Stephan, C., Hamacher, M., Blüggel, M., Körting, G., Chamrad, D., Scheer, C., Marcus, K., Reidegeld, K. A., Lohaus, C., Schäfer, H., Martens, L., Jones, P., Müller, M., Auyeung, K., Taylor, C., Binz, P. A., Thiele, H., Parkinson, D., Meyer, H. E., & Apweiler, R. (2005). 5th HUPO BPP Bioinformatics Meeting at the European Bioinformatics Institute in Hinxton, UK--Setting the analysis frame. Proteomics, 5(14), 3560-2. https://doi.org/10.1002/pmic.200500580
Stephan, Christian, et al. "5th HUPO BPP Bioinformatics Meeting at the European Bioinformatics Institute in Hinxton, UK--Setting the analysis frame." Proteomics vol. 5,14 (2005): 3560-2. doi: https://doi.org/10.1002/pmic.200500580
Stephan C, Hamacher M, Blüggel M, Körting G, Chamrad D, Scheer C, Marcus K, Reidegeld KA, Lohaus C, Schäfer H, Martens L, Jones P, Müller M, Auyeung K, Taylor C, Binz PA, Thiele H, Parkinson D, Meyer HE, Apweiler R. 5th HUPO BPP Bioinformatics Meeting at the European Bioinformatics Institute in Hinxton, UK--Setting the analysis frame. Proteomics. 2005 Sep;5(14):3560-2. doi: 10.1002/pmic.200500580. PMID: 16167371.
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Tailoring noise frequency spectrum between two consecutive second derivative filtering procedures to improve liquid chromatography-mass spectrometry determinations.

Analytical chemistry

Wang SC, Lin CJ, Chiang SM, Yu SN.
PMID: 18278950
Anal Chem. 2008 Mar 15;80(6):2097-104. doi: 10.1021/ac702222m. Epub 2008 Feb 16.

This paper reports a simple chemometric technique to alter the noise spectrum of a liquid chromatography-mass spectrometry (LC-MS) chromatogram between two consecutive second-derivative filter procedures to improve the peak signal-to-noise (S/N) ratio enhancement. This technique is to multiply one...

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Wang SC, Lin CJ, Chiang SM, et al. Tailoring noise frequency spectrum between two consecutive second derivative filtering procedures to improve liquid chromatography-mass spectrometry determinations. Anal Chem. 2008;80(6):2097-104doi: 10.1021/ac702222m.
Wang, S. C., Lin, C. J., Chiang, S. M., & Yu, S. N. (2008). Tailoring noise frequency spectrum between two consecutive second derivative filtering procedures to improve liquid chromatography-mass spectrometry determinations. Analytical chemistry, 80(6), 2097-104. https://doi.org/10.1021/ac702222m
Wang, Shau-Chun, et al. "Tailoring noise frequency spectrum between two consecutive second derivative filtering procedures to improve liquid chromatography-mass spectrometry determinations." Analytical chemistry vol. 80,6 (2008): 2097-104. doi: https://doi.org/10.1021/ac702222m
Wang SC, Lin CJ, Chiang SM, Yu SN. Tailoring noise frequency spectrum between two consecutive second derivative filtering procedures to improve liquid chromatography-mass spectrometry determinations. Anal Chem. 2008 Mar 15;80(6):2097-104. doi: 10.1021/ac702222m. Epub 2008 Feb 16. PMID: 18278950.
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Inductively coupled plasma mass spectrometry (ICP MS): a versatile tool.

Journal of mass spectrometry : JMS

Ammann AA.
PMID: 17385793
J Mass Spectrom. 2007 Apr;42(4):419-27. doi: 10.1002/jms.1206.

Inductively coupled plasma (ICP) mass spectrometry (MS) is routinely used in many diverse research fields such as earth, environmental, life and forensic sciences and in food, material, chemical, semiconductor and nuclear industries. The high ion density and the high...

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Ammann AA. Inductively coupled plasma mass spectrometry (ICP MS): a versatile tool. J Mass Spectrom. 2007;42(4):419-27doi: 10.1002/jms.1206.
Ammann, A. A. (2007). Inductively coupled plasma mass spectrometry (ICP MS): a versatile tool. Journal of mass spectrometry : JMS, 42(4), 419-27. https://doi.org/10.1002/jms.1206
Ammann, Adrian A. "Inductively coupled plasma mass spectrometry (ICP MS): a versatile tool." Journal of mass spectrometry : JMS vol. 42,4 (2007): 419-27. doi: https://doi.org/10.1002/jms.1206
Ammann AA. Inductively coupled plasma mass spectrometry (ICP MS): a versatile tool. J Mass Spectrom. 2007 Apr;42(4):419-27. doi: 10.1002/jms.1206. PMID: 17385793.
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Showing 25 to 36 of 212 entries