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Showing 13 to 24 of 131 entries
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On the usage of HWE for identifying genotyping errors.

Annals of human genetics

Teo YY, Fry AE, Clark TG, Tai ES, Seielstad M.
PMID: 17388941
Ann Hum Genet. 2007 Sep;71:701-3; author reply 704. doi: 10.1111/j.1469-1809.2007.00356.x. Epub 2007 Mar 27.

No abstract available.

Wavelet-based parametric functional mapping of developmental trajectories with high-dimensional data.

Genetics

Zhao W, Li H, Hou W, Wu R.
PMID: 17435222
Genetics. 2007 Jul;176(3):1879-92. doi: 10.1534/genetics.107.070920. Epub 2007 Apr 15.

The biological and statistical advantages of functional mapping result from joint modeling of the mean-covariance structures for developmental trajectories of a complex trait measured at a series of time points. While an increased number of time points can better...

Current software for genotype imputation.

Human genomics

Ellinghaus D, Schreiber S, Franke A, Nothnagel M.
PMID: 19706367
Hum Genomics. 2009 Jul;3(4):371-80. doi: 10.1186/1479-7364-3-4-371.

Genotype imputation for single nucleotide polymorphisms (SNPs) has been shown to be a powerful means to include genetic markers in exploratory genetic association studies without having to genotype them, and is becoming a standard procedure. A number of different...

High-throughput single nucleotide polymorphism genotyping using nanofluidic Dynamic Arrays.

BMC genomics

Wang J, Lin M, Crenshaw A, Hutchinson A, Hicks B, Yeager M, Berndt S, Huang WY, Hayes RB, Chanock SJ, Jones RC, Ramakrishnan R.
PMID: 19943955
BMC Genomics. 2009 Nov 28;10:561. doi: 10.1186/1471-2164-10-561.

BACKGROUND: Single nucleotide polymorphisms (SNPs) have emerged as the genetic marker of choice for mapping disease loci and candidate gene association studies, because of their high density and relatively even distribution in the human genomes. There is a need...

Investigating gene environment interaction in complex diseases: increasing power by selective sampling for environmental exposure.

International journal of epidemiology

Boks MP, Schipper M, Schubart CD, Sommer IE, Kahn RS, Ophoff RA.
PMID: 17971387
Int J Epidemiol. 2007 Dec;36(6):1363-9. doi: 10.1093/ije/dym215. Epub 2007 Oct 30.

BACKGROUND: The often limited influence of disease associated alleles on the vulnerability to complex diseases has lead to increased interest in environmental interaction with genotype. However, gene environmental interactions (GEIs) are not easily studied, since high numbers of subjects...

Confirmation of novel type 1 diabetes risk loci in families.

Diabetologia

Cooper JD, Howson JM, Smyth D, Walker NM, Stevens H, Yang JH, She JX, Eisenbarth GS, Rewers M, Todd JA, Akolkar B, Concannon P, Erlich HA, Julier C, Morahan G, Nerup J, Nierras C, Pociot F, Rich SS.
PMID: 22278338
Diabetologia. 2012 Apr;55(4):996-1000. doi: 10.1007/s00125-012-2450-3. Epub 2012 Jan 26.

AIMS/HYPOTHESIS: Over 50 regions of the genome have been associated with type 1 diabetes risk, mainly using large case/control collections. In a recent genome-wide association (GWA) study, 18 novel susceptibility loci were identified and replicated, including replication evidence from...

Confronting social disparities in child health: a critical appraisal of life-course science and research.

Pediatrics

Wise PH.
PMID: 19861471
Pediatrics. 2009 Nov;124:S203-11. doi: 10.1542/peds.2009-1100H.

The utility of the life-course framework to address disparities in child health is based on its ability to integrate the science of child development with the requirements of effective and just public policy. I argue that the life-course framework...

Genotype by environment interaction and neurodevelopment III. Focus on the child's broader social ecology.

Epidemiology and psychiatric sciences

Bellani M, Nobile M, Bianchi V, van Os J, Brambilla P.
PMID: 23402645
Epidemiol Psychiatr Sci. 2013 Jun;22(2):125-9. doi: 10.1017/S2045796013000061. Epub 2013 Feb 12.

In a short series of articles, we will review the evidence for genotype by environment interaction (G × E) in developmental psychopathology. We will focus specifically on the characteristics of types of exposure assessed with respect to both their...

Performance of genotype imputations using data from the 1000 Genomes Project.

Human heredity

Sung YJ, Wang L, Rankinen T, Bouchard C, Rao DC.
PMID: 22212296
Hum Hered. 2012;73(1):18-25. doi: 10.1159/000334084. Epub 2011 Dec 30.

Genotype imputations based on 1000 Genomes (1KG) Project data have the advantage of imputing many more SNPs than imputations based on HapMap data. It also provides an opportunity to discover associations with relatively rare variants. Recent investigations are increasingly...

Gene flow between the Korean peninsula and its neighboring countries.

PloS one

Jung J, Kang H, Cho YS, Oh JH, Ryu MH, Chung HW, Seo JS, Lee JE, Oh B, Bhak J, Kim HL.
PMID: 20686617
PLoS One. 2010 Jul 29;5(7):e11855. doi: 10.1371/journal.pone.0011855.

SNP markers provide the primary data for population structure analysis. In this study, we employed whole-genome autosomal SNPs as a marker set (54,836 SNP markers) and tested their possible effects on genetic ancestry using 320 subjects covering 24 regional...

iHAT: interactive hierarchical aggregation table for genetic association data.

BMC bioinformatics

Heinrich J, Vehlow C, Battke F, Jäger G, Weiskopf D, Nieselt K.
PMID: 22607364
BMC Bioinformatics. 2012;13:S2. doi: 10.1186/1471-2105-13-S8-S2. Epub 2012 May 18.

In the search for single-nucleotide polymorphisms which influence the observable phenotype, genome wide association studies have become an important technique for the identification of associations between genotype and phenotype of a diverse set of sequence-based data. We present a...

A predictive framework for integrating disparate genomic data types using sample-specific gene set enrichment analysis and multi-task learning.

PloS one

Bennett BD, Xiong Q, Mukherjee S, Furey TS.
PMID: 23028573
PLoS One. 2012;7(9):e44635. doi: 10.1371/journal.pone.0044635. Epub 2012 Sep 13.

Understanding the root molecular and genetic causes driving complex traits is a fundamental challenge in genomics and genetics. Numerous studies have used variation in gene expression to understand complex traits, but the underlying genomic variation that contributes to these...

Showing 13 to 24 of 131 entries