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Showing 13 to 24 of 42 entries
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Comparative transcriptome analyses of fruit development among pears, peaches, and strawberries provide new insights into single sigmoid patterns.

BMC plant biology

Pei MS, Cao SH, Wu L, Wang GM, Xie ZH, Gu C, Zhang SL.
PMID: 32143560
BMC Plant Biol. 2020 Mar 06;20(1):108. doi: 10.1186/s12870-020-2317-6.

BACKGROUND: Pear fruit exhibit a single sigmoid pattern during development, while peach and strawberry fruits exhibit a double sigmoid pattern. However, little is known about the differences between these two patterns.RESULTS: In this study, fruit weights were measured and...

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Pei MS, Cao SH, Wu L, et al. Comparative transcriptome analyses of fruit development among pears, peaches, and strawberries provide new insights into single sigmoid patterns. BMC Plant Biol. 2020;20(1):108doi: 10.1186/s12870-020-2317-6.
Pei, M. S., Cao, S. H., Wu, L., Wang, G. M., Xie, Z. H., Gu, C., & Zhang, S. L. (2020). Comparative transcriptome analyses of fruit development among pears, peaches, and strawberries provide new insights into single sigmoid patterns. BMC plant biology, 20(1), 108. https://doi.org/10.1186/s12870-020-2317-6
Pei, Mao-Song, et al. "Comparative transcriptome analyses of fruit development among pears, peaches, and strawberries provide new insights into single sigmoid patterns." BMC plant biology vol. 20,1 (2020): 108. doi: https://doi.org/10.1186/s12870-020-2317-6
Pei MS, Cao SH, Wu L, Wang GM, Xie ZH, Gu C, Zhang SL. Comparative transcriptome analyses of fruit development among pears, peaches, and strawberries provide new insights into single sigmoid patterns. BMC Plant Biol. 2020 Mar 06;20(1):108. doi: 10.1186/s12870-020-2317-6. PMID: 32143560; PMCID: PMC7060524.
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Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey.

BMC genomics

Wang Z, Ma W, Zhu T, Lu N, Ouyang F, Wang N, Yang G, Kong L, Qu G, Zhang S, Wang J.
PMID: 32698759
BMC Genomics. 2020 Jul 22;21(1):508. doi: 10.1186/s12864-020-06918-y.

BACKGROUND: Floral transition plays an important role in development, and proper time is necessary to improve the value of valuable ornamental trees. The molecular mechanisms of floral transition remain unknown in perennial woody plants. "Bairihua" is a type of...

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Wang Z, Ma W, Zhu T, et al. Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey. BMC Genomics. 2020;21(1):508doi: 10.1186/s12864-020-06918-y.
Wang, Z., Ma, W., Zhu, T., Lu, N., Ouyang, F., Wang, N., Yang, G., Kong, L., Qu, G., Zhang, S., & Wang, J. (2020). Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey. BMC genomics, 21(1), 508. https://doi.org/10.1186/s12864-020-06918-y
Wang, Zhi, et al. "Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey." BMC genomics vol. 21,1 (2020): 508. doi: https://doi.org/10.1186/s12864-020-06918-y
Wang Z, Ma W, Zhu T, Lu N, Ouyang F, Wang N, Yang G, Kong L, Qu G, Zhang S, Wang J. Multi-omics sequencing provides insight into floral transition in Catalpa bungei. C.A. Mey. BMC Genomics. 2020 Jul 22;21(1):508. doi: 10.1186/s12864-020-06918-y. PMID: 32698759; PMCID: PMC7376858.
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Genome-wide transcriptional analysis of submerged lotus reveals cooperative regulation and gene responses.

Scientific reports

Wang B, Jin Q, Zhang X, Mattson NS, Ren H, Cao J, Wang Y, Yao D, Xu Y.
PMID: 29907819
Sci Rep. 2018 Jun 15;8(1):9187. doi: 10.1038/s41598-018-27530-x.

Flooding severely limits plant growth even for some aquatic plants. Although much work has been done on submergence response of some important crop plants, little is known about the response mechanism of aquatic plants, i.e. lotus (Nelumbo nucifera). In...

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Wang B, Jin Q, Zhang X, et al. Genome-wide transcriptional analysis of submerged lotus reveals cooperative regulation and gene responses. Sci Rep. 2018;8(1):9187doi: 10.1038/s41598-018-27530-x.
Wang, B., Jin, Q., Zhang, X., Mattson, N. S., Ren, H., Cao, J., Wang, Y., Yao, D., & Xu, Y. (2018). Genome-wide transcriptional analysis of submerged lotus reveals cooperative regulation and gene responses. Scientific reports, 8(1), 9187. https://doi.org/10.1038/s41598-018-27530-x
Wang, Bei, et al. "Genome-wide transcriptional analysis of submerged lotus reveals cooperative regulation and gene responses." Scientific reports vol. 8,1 (2018): 9187. doi: https://doi.org/10.1038/s41598-018-27530-x
Wang B, Jin Q, Zhang X, Mattson NS, Ren H, Cao J, Wang Y, Yao D, Xu Y. Genome-wide transcriptional analysis of submerged lotus reveals cooperative regulation and gene responses. Sci Rep. 2018 Jun 15;8(1):9187. doi: 10.1038/s41598-018-27530-x. PMID: 29907819; PMCID: PMC6003939.
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Transcriptome profiling of differentially expressed genes in floral buds and flowers of male sterile and fertile lines in watermelon.

BMC genomics

Rhee SJ, Seo M, Jang YJ, Cho S, Lee GP.
PMID: 26552448
BMC Genomics. 2015 Nov 09;16:914. doi: 10.1186/s12864-015-2186-9.

BACKGROUND: Male sterility is an important mechanism for the production of hybrid seeds in watermelon. Although fruit development has been studied extensively in watermelon, there are no reports on gene expression in floral organs. In this study, RNA-sequencing (RNA-seq)...

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Rhee SJ, Seo M, Jang YJ, et al. Transcriptome profiling of differentially expressed genes in floral buds and flowers of male sterile and fertile lines in watermelon. BMC Genomics. 2015;16:914doi: 10.1186/s12864-015-2186-9.
Rhee, S. J., Seo, M., Jang, Y. J., Cho, S., & Lee, G. P. (2015). Transcriptome profiling of differentially expressed genes in floral buds and flowers of male sterile and fertile lines in watermelon. BMC genomics, 16914. https://doi.org/10.1186/s12864-015-2186-9
Rhee, Sun-Ju, et al. "Transcriptome profiling of differentially expressed genes in floral buds and flowers of male sterile and fertile lines in watermelon." BMC genomics vol. 16 (2015): 914. doi: https://doi.org/10.1186/s12864-015-2186-9
Rhee SJ, Seo M, Jang YJ, Cho S, Lee GP. Transcriptome profiling of differentially expressed genes in floral buds and flowers of male sterile and fertile lines in watermelon. BMC Genomics. 2015 Nov 09;16:914. doi: 10.1186/s12864-015-2186-9. PMID: 26552448; PMCID: PMC4640349.
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BSR-Seq analysis provides insights into the cold stress response of Actinidia arguta F1 populations.

BMC genomics

Lin M, Sun S, Fang J, Qi X, Sun L, Zhong Y, Sun Y, Hong G, Wang R, Li Y.
PMID: 33482717
BMC Genomics. 2021 Jan 22;22(1):72. doi: 10.1186/s12864-021-07369-9.

BACKGROUND: Freezing injury, which is an important abiotic stress in horticultural crops, influences the growth and development and the production area of kiwifruit (Actinidia Lind1). Among Actinidia species, Actinidia arguta has excellent cold resistance, but knowledge relevant to molecular...

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Lin M, Sun S, Fang J, et al. BSR-Seq analysis provides insights into the cold stress response of Actinidia arguta F1 populations. BMC Genomics. 2021;22(1):72doi: 10.1186/s12864-021-07369-9.
Lin, M., Sun, S., Fang, J., Qi, X., Sun, L., Zhong, Y., Sun, Y., Hong, G., Wang, R., & Li, Y. (2021). BSR-Seq analysis provides insights into the cold stress response of Actinidia arguta F1 populations. BMC genomics, 22(1), 72. https://doi.org/10.1186/s12864-021-07369-9
Lin, Miaomiao, et al. "BSR-Seq analysis provides insights into the cold stress response of Actinidia arguta F1 populations." BMC genomics vol. 22,1 (2021): 72. doi: https://doi.org/10.1186/s12864-021-07369-9
Lin M, Sun S, Fang J, Qi X, Sun L, Zhong Y, Sun Y, Hong G, Wang R, Li Y. BSR-Seq analysis provides insights into the cold stress response of Actinidia arguta F1 populations. BMC Genomics. 2021 Jan 22;22(1):72. doi: 10.1186/s12864-021-07369-9. PMID: 33482717; PMCID: PMC7821520.
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Comparative Proteomic Analysis on Fruit Ripening Processes in Two Varieties of Tropical Mango (Mangifera indica).

The protein journal

Chin CF, Teoh EY, Chee MJY, Al-Obaidi JR, Rahmad N, Lawson T.
PMID: 31552579
Protein J. 2019 Dec;38(6):704-715. doi: 10.1007/s10930-019-09868-x.

Mango (Mangifera indica L.) is an economically important fruit. However, the marketability of mango is affected by the perishable nature and short shelf-life of the fruit. Therefore, a better understanding of the mango ripening process is of great importance...

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Chin CF, Teoh EY, Chee MJY, et al. Comparative Proteomic Analysis on Fruit Ripening Processes in Two Varieties of Tropical Mango (Mangifera indica). Protein J. 2019;38(6):704-715doi: 10.1007/s10930-019-09868-x.
Chin, C. F., Teoh, E. Y., Chee, M. J. Y., Al-Obaidi, J. R., Rahmad, N., & Lawson, T. (2019). Comparative Proteomic Analysis on Fruit Ripening Processes in Two Varieties of Tropical Mango (Mangifera indica). The protein journal, 38(6), 704-715. https://doi.org/10.1007/s10930-019-09868-x
Chin, Chiew Foan, et al. "Comparative Proteomic Analysis on Fruit Ripening Processes in Two Varieties of Tropical Mango (Mangifera indica)." The protein journal vol. 38,6 (2019): 704-715. doi: https://doi.org/10.1007/s10930-019-09868-x
Chin CF, Teoh EY, Chee MJY, Al-Obaidi JR, Rahmad N, Lawson T. Comparative Proteomic Analysis on Fruit Ripening Processes in Two Varieties of Tropical Mango (Mangifera indica). Protein J. 2019 Dec;38(6):704-715. doi: 10.1007/s10930-019-09868-x. PMID: 31552579.
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Fruit ripening in Lycium barbarum and Lycium ruthenicum is associated with distinct gene expression patterns.

FEBS open bio

Zhao J, Li H, Yin Y, An W, Qin X, Wang Y, Fan Y, Li Y, Cao Y.
PMID: 32533890
FEBS Open Bio. 2020 Aug;10(8):1550-1567. doi: 10.1002/2211-5463.12910. Epub 2020 Jun 29.

Goji berries have been used as food and medicine for millennia. Due to their high morphological similarity, fruits of two distinct species belonging to the family Solanaceae, Lycium barbarum (LB) and Lycium chinense (Chinese boxthorn), are usually marketed together...

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Zhao J, Li H, Yin Y, et al. Fruit ripening in Lycium barbarum and Lycium ruthenicum is associated with distinct gene expression patterns. FEBS Open Bio. 2020;10(8):1550-1567doi: 10.1002/2211-5463.12910.
Zhao, J., Li, H., Yin, Y., An, W., Qin, X., Wang, Y., Fan, Y., Li, Y., & Cao, Y. (2020). Fruit ripening in Lycium barbarum and Lycium ruthenicum is associated with distinct gene expression patterns. FEBS open bio, 10(8), 1550-1567. https://doi.org/10.1002/2211-5463.12910
Zhao, Jianhua, et al. "Fruit ripening in Lycium barbarum and Lycium ruthenicum is associated with distinct gene expression patterns." FEBS open bio vol. 10,8 (2020): 1550-1567. doi: https://doi.org/10.1002/2211-5463.12910
Zhao J, Li H, Yin Y, An W, Qin X, Wang Y, Fan Y, Li Y, Cao Y. Fruit ripening in Lycium barbarum and Lycium ruthenicum is associated with distinct gene expression patterns. FEBS Open Bio. 2020 Aug;10(8):1550-1567. doi: 10.1002/2211-5463.12910. Epub 2020 Jun 29. PMID: 32533890; PMCID: PMC7396440.
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Analysis of the Prunellae Spica transcriptome under salt stress.

Plant physiology and biochemistry : PPB

Liu Z, Hua Y, Wang S, Liu X, Zou L, Chen C, Zhao H, Yan Y.
PMID: 32998098
Plant Physiol Biochem. 2020 Nov;156:314-322. doi: 10.1016/j.plaphy.2020.09.023. Epub 2020 Sep 29.

Prunella vulgaris L. is a moderately salt tolerant plant commonly found in China and Europe, whose spica (Prunellae Spica) has been used as a traditional medicine. The scant transcriptomic and genomic resources of Prunellae Spica have greatly hindered further...

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Liu Z, Hua Y, Wang S, et al. Analysis of the Prunellae Spica transcriptome under salt stress. Plant Physiol Biochem. 2020;156:314-322doi: 10.1016/j.plaphy.2020.09.023.
Liu, Z., Hua, Y., Wang, S., Liu, X., Zou, L., Chen, C., Zhao, H., & Yan, Y. (2020). Analysis of the Prunellae Spica transcriptome under salt stress. Plant physiology and biochemistry : PPB, 156314-322. https://doi.org/10.1016/j.plaphy.2020.09.023
Liu, Zixiu, et al. "Analysis of the Prunellae Spica transcriptome under salt stress." Plant physiology and biochemistry : PPB vol. 156 (2020): 314-322. doi: https://doi.org/10.1016/j.plaphy.2020.09.023
Liu Z, Hua Y, Wang S, Liu X, Zou L, Chen C, Zhao H, Yan Y. Analysis of the Prunellae Spica transcriptome under salt stress. Plant Physiol Biochem. 2020 Nov;156:314-322. doi: 10.1016/j.plaphy.2020.09.023. Epub 2020 Sep 29. PMID: 32998098.
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Identification of differentially expressed genes and pathways in isonuclear kenaf genotypes under salt stress.

Physiologia plantarum

Munsif F, Kong X, Khan A, Shah T, Arif M, Jahangir M, Akhtar K, Tang D, Zheng J, Liao X, Faisal S, Ali I, Iqbal A, Ahmad P, Zhou R.
PMID: 33135207
Physiol Plant. 2021 Dec;173(4):1295-1308. doi: 10.1111/ppl.13253. Epub 2020 Nov 18.

Salinity is a potential abiotic stress and globally threatens crop productivity. However, the molecular mechanisms underlying salt stress tolerance with respect to cytoplasmic effect, gene expression, and metabolism pathway under salt stress have not yet been reported in isonuclear...

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Munsif F, Kong X, Khan A, et al. Identification of differentially expressed genes and pathways in isonuclear kenaf genotypes under salt stress. Physiol Plant. 2020;173(4):1295-1308doi: 10.1111/ppl.13253.
Munsif, F., Kong, X., Khan, A., Shah, T., Arif, M., Jahangir, M., Akhtar, K., Tang, D., Zheng, J., Liao, X., Faisal, S., Ali, I., Iqbal, A., Ahmad, P., & Zhou, R. (2021). Identification of differentially expressed genes and pathways in isonuclear kenaf genotypes under salt stress. Physiologia plantarum, 173(4), 1295-1308. https://doi.org/10.1111/ppl.13253
Munsif, Fazal, et al. "Identification of differentially expressed genes and pathways in isonuclear kenaf genotypes under salt stress." Physiologia plantarum vol. 173,4 (2021): 1295-1308. doi: https://doi.org/10.1111/ppl.13253
Munsif F, Kong X, Khan A, Shah T, Arif M, Jahangir M, Akhtar K, Tang D, Zheng J, Liao X, Faisal S, Ali I, Iqbal A, Ahmad P, Zhou R. Identification of differentially expressed genes and pathways in isonuclear kenaf genotypes under salt stress. Physiol Plant. 2021 Dec;173(4):1295-1308. doi: 10.1111/ppl.13253. Epub 2020 Nov 18. PMID: 33135207.
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Comparative transcriptome sequencing analysis and functional identification of a NAM-2-like gene in jute (Corchorus capsularis L.).

Plant physiology and biochemistry : PPB

Zhang G, Huang S, Zhang C, Wu Y, Li D, Deng J, Shan S, Qi J.
PMID: 33561658
Plant Physiol Biochem. 2021 Apr;161:25-35. doi: 10.1016/j.plaphy.2021.01.043. Epub 2021 Jan 30.

Jute (Corchorus capsularis L.) is one of the most important sources of natural fibre. Drought is among the main factors affecting the production of jute. It is essential for drought tolerance improvement to discover the genes associated with jute...

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Zhang G, Huang S, Zhang C, et al. Comparative transcriptome sequencing analysis and functional identification of a NAM-2-like gene in jute (Corchorus capsularis L.). Plant Physiol Biochem. 2021;161:25-35doi: 10.1016/j.plaphy.2021.01.043.
Zhang, G., Huang, S., Zhang, C., Wu, Y., Li, D., Deng, J., Shan, S., & Qi, J. (2021). Comparative transcriptome sequencing analysis and functional identification of a NAM-2-like gene in jute (Corchorus capsularis L.). Plant physiology and biochemistry : PPB, 16125-35. https://doi.org/10.1016/j.plaphy.2021.01.043
Zhang, Gaoyang, et al. "Comparative transcriptome sequencing analysis and functional identification of a NAM-2-like gene in jute (Corchorus capsularis L.)." Plant physiology and biochemistry : PPB vol. 161 (2021): 25-35. doi: https://doi.org/10.1016/j.plaphy.2021.01.043
Zhang G, Huang S, Zhang C, Wu Y, Li D, Deng J, Shan S, Qi J. Comparative transcriptome sequencing analysis and functional identification of a NAM-2-like gene in jute (Corchorus capsularis L.). Plant Physiol Biochem. 2021 Apr;161:25-35. doi: 10.1016/j.plaphy.2021.01.043. Epub 2021 Jan 30. PMID: 33561658.
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De novo transcriptome assembly of the green alga Ankistrodesmus falcatus.

PloS one

Schomaker RA, Dudycha JL.
PMID: 33989339
PLoS One. 2021 May 14;16(5):e0251668. doi: 10.1371/journal.pone.0251668. eCollection 2021.

Ankistrodesmus falcatus is a globally distributed freshwater chlorophyte that is a candidate for biofuel production, is used to study the effects of toxins on aquatic communities, and is used as food in zooplankton research. Each of these research fields...

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Schomaker RA, Dudycha JL. De novo transcriptome assembly of the green alga Ankistrodesmus falcatus. PLoS One. 2021;16(5):e0251668doi: 10.1371/journal.pone.0251668.
Schomaker, R. A., & Dudycha, J. L. (2021). De novo transcriptome assembly of the green alga Ankistrodesmus falcatus. PloS one, 16(5), e0251668. https://doi.org/10.1371/journal.pone.0251668
Schomaker, Rachel A, and Dudycha, Jeffry L. "De novo transcriptome assembly of the green alga Ankistrodesmus falcatus." PloS one vol. 16,5 (2021): e0251668. doi: https://doi.org/10.1371/journal.pone.0251668
Schomaker RA, Dudycha JL. De novo transcriptome assembly of the green alga Ankistrodesmus falcatus. PLoS One. 2021 May 14;16(5):e0251668. doi: 10.1371/journal.pone.0251668. eCollection 2021. PMID: 33989339; PMCID: PMC8121315.
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Selection of reference genes for RT-qPCR normalization in blueberry (Vaccinium corymbosum × angustifolium) under various abiotic stresses.

FEBS open bio

Deng Y, Li Y, Sun H.
PMID: 32438500
FEBS Open Bio. 2020 Aug;10(8):1418-1435. doi: 10.1002/2211-5463.12903. Epub 2020 Jun 23.

As a small fruit rich in anthocyanins, blueberry (Vaccinium corymbosum × angustifolium) has become a focus of research in recent years for identifying genes related to anthocyanin transport and stress resistance mechanisms based on transcriptome sequencing. However, the lack...

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Deng Y, Li Y, Sun H. Selection of reference genes for RT-qPCR normalization in blueberry (Vaccinium corymbosum × angustifolium) under various abiotic stresses. FEBS Open Bio. 2020;10(8):1418-1435doi: 10.1002/2211-5463.12903.
Deng, Y., Li, Y., & Sun, H. (2020). Selection of reference genes for RT-qPCR normalization in blueberry (Vaccinium corymbosum × angustifolium) under various abiotic stresses. FEBS open bio, 10(8), 1418-1435. https://doi.org/10.1002/2211-5463.12903
Deng, Yu, et al. "Selection of reference genes for RT-qPCR normalization in blueberry (Vaccinium corymbosum × angustifolium) under various abiotic stresses." FEBS open bio vol. 10,8 (2020): 1418-1435. doi: https://doi.org/10.1002/2211-5463.12903
Deng Y, Li Y, Sun H. Selection of reference genes for RT-qPCR normalization in blueberry (Vaccinium corymbosum × angustifolium) under various abiotic stresses. FEBS Open Bio. 2020 Aug;10(8):1418-1435. doi: 10.1002/2211-5463.12903. Epub 2020 Jun 23. PMID: 32438500; PMCID: PMC7396441.
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Showing 13 to 24 of 42 entries