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A complete data processing workflow for cryo-ET and subtomogram averaging.

Nature methods

Chen M, Bell JM, Shi X, Sun SY, Wang Z, Ludtke SJ.
PMID: 31611690
Nat Methods. 2019 Nov;16(11):1161-1168. doi: 10.1038/s41592-019-0591-8. Epub 2019 Oct 14.

Electron cryotomography is currently the only method capable of visualizing cells in three dimensions at nanometer resolutions. While modern instruments produce massive amounts of tomography data containing extremely rich structural information, data processing is very labor intensive and the...

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Chen M, Bell JM, Shi X, et al. A complete data processing workflow for cryo-ET and subtomogram averaging. Nat Methods. 2019;16(11):1161-1168doi: 10.1038/s41592-019-0591-8.
Chen, M., Bell, J. M., Shi, X., Sun, S. Y., Wang, Z., & Ludtke, S. J. (2019). A complete data processing workflow for cryo-ET and subtomogram averaging. Nature methods, 16(11), 1161-1168. https://doi.org/10.1038/s41592-019-0591-8
Chen, Muyuan, et al. "A complete data processing workflow for cryo-ET and subtomogram averaging." Nature methods vol. 16,11 (2019): 1161-1168. doi: https://doi.org/10.1038/s41592-019-0591-8
Chen M, Bell JM, Shi X, Sun SY, Wang Z, Ludtke SJ. A complete data processing workflow for cryo-ET and subtomogram averaging. Nat Methods. 2019 Nov;16(11):1161-1168. doi: 10.1038/s41592-019-0591-8. Epub 2019 Oct 14. PMID: 31611690; PMCID: PMC6858567.
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Data reconstruction using iteratively reweighted L1-principal component analysis for an electronic nose system.

PloS one

Jeon HM, Lee JY, Jeong GM, Choi SI.
PMID: 30044840
PLoS One. 2018 Jul 25;13(7):e0200605. doi: 10.1371/journal.pone.0200605. eCollection 2018.

We propose a method to reconstruct damaged data based on statistical learning during data acquisition. In the process of measuring the data using a sensor, the damage of the data caused by the defect of the sensor or the...

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Jeon HM, Lee JY, Jeong GM, et al. Data reconstruction using iteratively reweighted L1-principal component analysis for an electronic nose system. PLoS One. 2018;13(7):e0200605doi: 10.1371/journal.pone.0200605.
Jeon, H. M., Lee, J. Y., Jeong, G. M., & Choi, S. I. (2018). Data reconstruction using iteratively reweighted L1-principal component analysis for an electronic nose system. PloS one, 13(7), e0200605. https://doi.org/10.1371/journal.pone.0200605
Jeon, Hong-Min, et al. "Data reconstruction using iteratively reweighted L1-principal component analysis for an electronic nose system." PloS one vol. 13,7 (2018): e0200605. doi: https://doi.org/10.1371/journal.pone.0200605
Jeon HM, Lee JY, Jeong GM, Choi SI. Data reconstruction using iteratively reweighted L1-principal component analysis for an electronic nose system. PLoS One. 2018 Jul 25;13(7):e0200605. doi: 10.1371/journal.pone.0200605. eCollection 2018. PMID: 30044840; PMCID: PMC6059466.
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Reviving 30 Year Old Technology: Lessons Learned from Transferring Patient Data Using Data Matrix Codes.

Studies in health technology and informatics

Brix TJ, Neuhaus P, Storck M, Soto-Rey I, Dugas M.
PMID: 30942721
Stud Health Technol Inform. 2019;258:90-94.

In patient care and medical research patient data often has to be transferred between different electronic systems. These systems can be very heterogeneous, sometimes even legacy systems, and thus, often do not support standardized interfaces for data transfer. Since...

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Brix TJ, Neuhaus P, Storck M, et al. Reviving 30 Year Old Technology: Lessons Learned from Transferring Patient Data Using Data Matrix Codes. Stud Health Technol Inform. 2019;258:90-94
Brix, T. J., Neuhaus, P., Storck, M., Soto-Rey, I., & Dugas, M. (2019). Reviving 30 Year Old Technology: Lessons Learned from Transferring Patient Data Using Data Matrix Codes. Studies in health technology and informatics, 25890-94.
Brix, Tobias Johannes, et al. "Reviving 30 Year Old Technology: Lessons Learned from Transferring Patient Data Using Data Matrix Codes." Studies in health technology and informatics vol. 258 (2019): 90-94.
Brix TJ, Neuhaus P, Storck M, Soto-Rey I, Dugas M. Reviving 30 Year Old Technology: Lessons Learned from Transferring Patient Data Using Data Matrix Codes. Stud Health Technol Inform. 2019;258:90-94. PMID: 30942721.
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[Public health education integrated in hospital. An internship proposal, "Medical information and pharmacology"].

Sante publique (Vandoeuvre-les-Nancy, France)

Boulay F, Chevallier T, Staccini P, Chichmanian RM.
PMID: 9417377
Sante Publique. 1997 Jun;9(2):227-33.

According to a recent circular reforming french medical studies, we propose a teaching of medical information and pharmacology in situ within hospital instructions. Students could acquire an investigation methodology on the medicine economy. It will cover in four sessions...

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Boulay F, Chevallier T, Staccini P, et al. Enseignement de santé publique intégré aux stages hospitaliers. Une proposition de stage "Information médicale et pharmacologie". [Public health education integrated in hospital. An internship proposal, "Medical information and pharmacology"]. Sante Publique. 1997;9(2):227-33
Boulay, F., Chevallier, T., Staccini, P., & Chichmanian, R. M. (1997). Enseignement de santé publique intégré aux stages hospitaliers. Une proposition de stage "Information médicale et pharmacologie". [Public health education integrated in hospital. An internship proposal, "Medical information and pharmacology"]. Sante publique (Vandoeuvre-les-Nancy, France), 9(2), 227-33.
Boulay, F, et al. "Enseignement de santé publique intégré aux stages hospitaliers. Une proposition de stage "Information médicale et pharmacologie"." [Public health education integrated in hospital. An internship proposal, "Medical information and pharmacology"]. Sante publique (Vandoeuvre-les-Nancy, France) vol. 9,2 (1997): 227-33.
Boulay F, Chevallier T, Staccini P, Chichmanian RM. Enseignement de santé publique intégré aux stages hospitaliers. Une proposition de stage "Information médicale et pharmacologie". [Public health education integrated in hospital. An internship proposal, "Medical information and pharmacology"]. Sante Publique. 1997 Jun;9(2):227-33. French. PMID: 9417377.
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Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases.

Nature communications

Lloréns-Rico V, Vieira-Silva S, Gonçalves PJ, Falony G, Raes J.
PMID: 34117246
Nat Commun. 2021 Jun 11;12(1):3562. doi: 10.1038/s41467-021-23821-6.

While metagenomic sequencing has become the tool of preference to study host-associated microbial communities, downstream analyses and clinical interpretation of microbiome data remains challenging due to the sparsity and compositionality of sequence matrices. Here, we evaluate both computational and...

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Lloréns-Rico V, Vieira-Silva S, Gonçalves PJ, et al. Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases. Nat Commun. 2021;12(1):3562doi: 10.1038/s41467-021-23821-6.
Lloréns-Rico, V., Vieira-Silva, S., Gonçalves, P. J., Falony, G., & Raes, J. (2021). Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases. Nature communications, 12(1), 3562. https://doi.org/10.1038/s41467-021-23821-6
Lloréns-Rico, Verónica, et al. "Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases." Nature communications vol. 12,1 (2021): 3562. doi: https://doi.org/10.1038/s41467-021-23821-6
Lloréns-Rico V, Vieira-Silva S, Gonçalves PJ, Falony G, Raes J. Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases. Nat Commun. 2021 Jun 11;12(1):3562. doi: 10.1038/s41467-021-23821-6. PMID: 34117246; PMCID: PMC8196019.
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[Analyses on the common-used classified codes of medical consumptive materials].

Zhongguo yi liao qi xie za zhi = Chinese journal of medical instrumentation

Li H.
PMID: 22571160
Zhongguo Yi Liao Qi Xie Za Zhi. 2012 Jan;36(1):69-71.

The codes of medical consumptive materials is the base for standardized and information management. This article analyzes in detail the structure and meanings of five common-used classification codes in management including registration certificate code, bar code of high-value medical...

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Li H. [Analyses on the common-used classified codes of medical consumptive materials]. Zhongguo Yi Liao Qi Xie Za Zhi. 2012;36(1):69-71
Li, H. (2012). [Analyses on the common-used classified codes of medical consumptive materials]. Zhongguo yi liao qi xie za zhi = Chinese journal of medical instrumentation, 36(1), 69-71.
Li, Han. "[Analyses on the common-used classified codes of medical consumptive materials]." Zhongguo yi liao qi xie za zhi = Chinese journal of medical instrumentation vol. 36,1 (2012): 69-71.
Li H. [Analyses on the common-used classified codes of medical consumptive materials]. Zhongguo Yi Liao Qi Xie Za Zhi. 2012 Jan;36(1):69-71. Chinese. PMID: 22571160.
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Overview of the interactive task in BioCreative V.

Database : the journal of biological databases and curation

Wang Q, S Abdul S, Almeida L, Ananiadou S, Balderas-Martínez YI, Batista-Navarro R, Campos D, Chilton L, Chou HJ, Contreras G, Cooper L, Dai HJ, Ferrell B, Fluck J, Gama-Castro S, George N, Gkoutos G, Irin AK, Jensen LJ, Jimenez S, Jue TR, Keseler I, Madan S, Matos S, McQuilton P, Milacic M, Mort M, Natarajan J, Pafilis E, Pereira E, Rao S, Rinaldi F, Rothfels K, Salgado D, Silva RM, Singh O, Stefancsik R, Su CH, Subramani S, Tadepally HD, Tsaprouni L, Vasilevsky N, Wang X, Chatr-Aryamontri A, Laulederkind SJ, Matis-Mitchell S, McEntyre J, Orchard S, Pundir S, Rodriguez-Esteban R, Van Auken K, Lu Z, Schaeffer M, Wu CH, Hirschman L, Arighi CN.
PMID: 27589961
Database (Oxford). 2016 Sep 01;2016. doi: 10.1093/database/baw119. Print 2016.

Fully automated text mining (TM) systems promote efficient literature searching, retrieval, and review but are not sufficient to produce ready-to-consume curated documents. These systems are not meant to replace biocurators, but instead to assist them in one or more...

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Wang Q, S Abdul S, Almeida L, et al. Overview of the interactive task in BioCreative V. Database (Oxford). 2016;2016doi: 10.1093/database/baw119.
Wang, Q., S Abdul, S., Almeida, L., Ananiadou, S., Balderas-Martínez, Y. I., Batista-Navarro, R., Campos, D., Chilton, L., Chou, H. J., Contreras, G., Cooper, L., Dai, H. J., Ferrell, B., Fluck, J., Gama-Castro, S., George, N., Gkoutos, G., Irin, A. K., Jensen, L. J., Jimenez, S., Jue, T. R., Keseler, I., Madan, S., Matos, S., McQuilton, P., Milacic, M., Mort, M., Natarajan, J., Pafilis, E., Pereira, E., Rao, S., Rinaldi, F., Rothfels, K., Salgado, D., Silva, R. M., Singh, O., Stefancsik, R., Su, C. H., Subramani, S., Tadepally, H. D., Tsaprouni, L., Vasilevsky, N., Wang, X., Chatr-Aryamontri, A., Laulederkind, S. J., Matis-Mitchell, S., McEntyre, J., Orchard, S., Pundir, S., Rodriguez-Esteban, R., Van Auken, K., Lu, Z., Schaeffer, M., Wu, C. H., Hirschman, L., & Arighi, C. N. (2016). Overview of the interactive task in BioCreative V. Database : the journal of biological databases and curation, 2016. https://doi.org/10.1093/database/baw119
Wang, Qinghua, et al. "Overview of the interactive task in BioCreative V." Database : the journal of biological databases and curation vol. 2016 (2016). doi: https://doi.org/10.1093/database/baw119
Wang Q, S Abdul S, Almeida L, Ananiadou S, Balderas-Martínez YI, Batista-Navarro R, Campos D, Chilton L, Chou HJ, Contreras G, Cooper L, Dai HJ, Ferrell B, Fluck J, Gama-Castro S, George N, Gkoutos G, Irin AK, Jensen LJ, Jimenez S, Jue TR, Keseler I, Madan S, Matos S, McQuilton P, Milacic M, Mort M, Natarajan J, Pafilis E, Pereira E, Rao S, Rinaldi F, Rothfels K, Salgado D, Silva RM, Singh O, Stefancsik R, Su CH, Subramani S, Tadepally HD, Tsaprouni L, Vasilevsky N, Wang X, Chatr-Aryamontri A, Laulederkind SJ, Matis-Mitchell S, McEntyre J, Orchard S, Pundir S, Rodriguez-Esteban R, Van Auken K, Lu Z, Schaeffer M, Wu CH, Hirschman L, Arighi CN. Overview of the interactive task in BioCreative V. Database (Oxford). 2016 Sep 01;2016. doi: 10.1093/database/baw119. Print 2016. PMID: 27589961; PMCID: PMC5009325.
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Problems of disease classification in machine-processable format.

Annals of the New York Academy of Sciences

Lincoln TL.
PMID: 5260071
Ann N Y Acad Sci. 1969 Sep 30;161(2):800-5. doi: 10.1111/j.1749-6632.1969.tb34110.x.

No abstract available.

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Lincoln TL. Problems of disease classification in machine-processable format. Ann N Y Acad Sci. 1969;161(2):800-5doi: 10.1111/j.1749-6632.1969.tb34110.x.
Lincoln, T. L. (1969). Problems of disease classification in machine-processable format. Annals of the New York Academy of Sciences, 161(2), 800-5. https://doi.org/10.1111/j.1749-6632.1969.tb34110.x
Lincoln, T L. "Problems of disease classification in machine-processable format." Annals of the New York Academy of Sciences vol. 161,2 (1969): 800-5. doi: https://doi.org/10.1111/j.1749-6632.1969.tb34110.x
Lincoln TL. Problems of disease classification in machine-processable format. Ann N Y Acad Sci. 1969 Sep 30;161(2):800-5. doi: 10.1111/j.1749-6632.1969.tb34110.x. PMID: 5260071.
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Diagnostic index for diseases of the eye. Based on the International Statistical Classification of Diseases (ICD).

The British journal of ophthalmology

Cullen JF.
PMID: 5428670
Br J Ophthalmol. 1970 May;54(5):348-55. doi: 10.1136/bjo.54.5.348.
Free PMC Article

No abstract available.

Cite
Cullen JF. Diagnostic index for diseases of the eye. Based on the International Statistical Classification of Diseases (ICD). Br J Ophthalmol. 1970;54(5):348-55doi: 10.1136/bjo.54.5.348.
Cullen, J. F. (1970). Diagnostic index for diseases of the eye. Based on the International Statistical Classification of Diseases (ICD). The British journal of ophthalmology, 54(5), 348-55. https://doi.org/10.1136/bjo.54.5.348
Cullen, J F. "Diagnostic index for diseases of the eye. Based on the International Statistical Classification of Diseases (ICD)." The British journal of ophthalmology vol. 54,5 (1970): 348-55. doi: https://doi.org/10.1136/bjo.54.5.348
Cullen JF. Diagnostic index for diseases of the eye. Based on the International Statistical Classification of Diseases (ICD). Br J Ophthalmol. 1970 May;54(5):348-55. doi: 10.1136/bjo.54.5.348. PMID: 5428670; PMCID: PMC1207826.
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Showing 193 to 201 of 201 entries