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Finding invisible quantitative trait loci with missing data.

Plant biotechnology journal

Gabur I, Chawla HS, Liu X, Kumar V, Faure S, von Tiedemann A, Jestin C, Dryzska E, Volkmann S, Breuer F, Delourme R, Snowdon R, Obermeier C.
PMID: 29729219
Plant Biotechnol J. 2018 Dec;16(12):2102-2112. doi: 10.1111/pbi.12942. Epub 2018 May 28.

Evolutionary processes during plant polyploidization and speciation have led to extensive presence-absence variation (PAV) in crop genomes, and there is increasing evidence that PAV associates with important traits. Today, high-resolution genetic analysis in major crops frequently implements simple, cost-effective,...

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Gabur I, Chawla HS, Liu X, et al. Finding invisible quantitative trait loci with missing data. Plant Biotechnol J. 2018;16(12):2102-2112doi: 10.1111/pbi.12942.
Gabur, I., Chawla, H. S., Liu, X., Kumar, V., Faure, S., von Tiedemann, A., Jestin, C., Dryzska, E., Volkmann, S., Breuer, F., Delourme, R., Snowdon, R., & Obermeier, C. (2018). Finding invisible quantitative trait loci with missing data. Plant biotechnology journal, 16(12), 2102-2112. https://doi.org/10.1111/pbi.12942
Gabur, Iulian, et al. "Finding invisible quantitative trait loci with missing data." Plant biotechnology journal vol. 16,12 (2018): 2102-2112. doi: https://doi.org/10.1111/pbi.12942
Gabur I, Chawla HS, Liu X, Kumar V, Faure S, von Tiedemann A, Jestin C, Dryzska E, Volkmann S, Breuer F, Delourme R, Snowdon R, Obermeier C. Finding invisible quantitative trait loci with missing data. Plant Biotechnol J. 2018 Dec;16(12):2102-2112. doi: 10.1111/pbi.12942. Epub 2018 May 28. PMID: 29729219; PMCID: PMC6230954.
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Genomic sequencing in acutely ill infants: what will it take to demonstrate clinical value?.

Genetics in medicine : official journal of the American College of Medical Genetics

Grosse SD, Farnaes L.
PMID: 30100610
Genet Med. 2019 Feb;21(2):269-271. doi: 10.1038/s41436-018-0124-3. Epub 2018 Aug 13.

No abstract available.

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Grosse SD, Farnaes L. Genomic sequencing in acutely ill infants: what will it take to demonstrate clinical value?. Genet Med. 2018;21(2):269-271doi: 10.1038/s41436-018-0124-3.
Grosse, S. D., & Farnaes, L. (2019). Genomic sequencing in acutely ill infants: what will it take to demonstrate clinical value?. Genetics in medicine : official journal of the American College of Medical Genetics, 21(2), 269-271. https://doi.org/10.1038/s41436-018-0124-3
Grosse, Scott D, and Farnaes, Lauge. "Genomic sequencing in acutely ill infants: what will it take to demonstrate clinical value?." Genetics in medicine : official journal of the American College of Medical Genetics vol. 21,2 (2019): 269-271. doi: https://doi.org/10.1038/s41436-018-0124-3
Grosse SD, Farnaes L. Genomic sequencing in acutely ill infants: what will it take to demonstrate clinical value?. Genet Med. 2019 Feb;21(2):269-271. doi: 10.1038/s41436-018-0124-3. Epub 2018 Aug 13. PMID: 30100610; PMCID: PMC6691721.
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Plant sex chromosomes: a non-degenerated Y?.

Current biology : CB

Bachtrog D.
PMID: 21959153
Curr Biol. 2011 Sep 27;21(18):R685-8. doi: 10.1016/j.cub.2011.08.027.

Animal Y chromosomes have undergone chromosome-wide degeneration in response to a lack of recombination, and ancient Ys contain few functional genes. Recent research suggests that plant Y chromosomes may evolve differently and retain most of their ancestral genes.

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Bachtrog D. Plant sex chromosomes: a non-degenerated Y?. Curr Biol. 2011;21(18):R685-8doi: 10.1016/j.cub.2011.08.027.
Bachtrog, D. (2011). Plant sex chromosomes: a non-degenerated Y?. Current biology : CB, 21(18), R685-8. https://doi.org/10.1016/j.cub.2011.08.027
Bachtrog, Doris. "Plant sex chromosomes: a non-degenerated Y?." Current biology : CB vol. 21,18 (2011): R685-8. doi: https://doi.org/10.1016/j.cub.2011.08.027
Bachtrog D. Plant sex chromosomes: a non-degenerated Y?. Curr Biol. 2011 Sep 27;21(18):R685-8. doi: 10.1016/j.cub.2011.08.027. PMID: 21959153.
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Genetic Mapping in Autohexaploid Sweet Potato with Low-Coverage NGS-Based Genotyping Data.

G3 (Bethesda, Md.)

Yamamoto E, Shirasawa K, Kimura T, Monden Y, Tanaka M, Isobe S.
PMID: 32482727
G3 (Bethesda). 2020 Aug 05;10(8):2661-2670. doi: 10.1534/g3.120.401433.

Next-generation sequencing (NGS)-based genotyping methods can generate numerous genetic markers in a single experiment and have contributed to plant genetic mapping. However, for high precision genetic analysis, the complicated genetic segregation mode in polyploid organisms requires high-coverage NGS data...

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Yamamoto E, Shirasawa K, Kimura T, et al. Genetic Mapping in Autohexaploid Sweet Potato with Low-Coverage NGS-Based Genotyping Data. G3 (Bethesda). 2020;10(8):2661-2670doi: 10.1534/g3.120.401433.
Yamamoto, E., Shirasawa, K., Kimura, T., Monden, Y., Tanaka, M., & Isobe, S. (2020). Genetic Mapping in Autohexaploid Sweet Potato with Low-Coverage NGS-Based Genotyping Data. G3 (Bethesda, Md.), 10(8), 2661-2670. https://doi.org/10.1534/g3.120.401433
Yamamoto, Eiji, et al. "Genetic Mapping in Autohexaploid Sweet Potato with Low-Coverage NGS-Based Genotyping Data." G3 (Bethesda, Md.) vol. 10,8 (2020): 2661-2670. doi: https://doi.org/10.1534/g3.120.401433
Yamamoto E, Shirasawa K, Kimura T, Monden Y, Tanaka M, Isobe S. Genetic Mapping in Autohexaploid Sweet Potato with Low-Coverage NGS-Based Genotyping Data. G3 (Bethesda). 2020 Aug 05;10(8):2661-2670. doi: 10.1534/g3.120.401433. PMID: 32482727; PMCID: PMC7407471.
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A better mousetrap to guard against anthracnose disease in bean.

Journal of experimental botany

Cannon SB, Innes RW.
PMID: 33948655
J Exp Bot. 2021 May 04;72(10):3487-3488. doi: 10.1093/jxb/erab146.

No abstract available.

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Cannon SB, Innes RW. A better mousetrap to guard against anthracnose disease in bean. J Exp Bot. 2021;72(10):3487-3488doi: 10.1093/jxb/erab146.
Cannon, S. B., & Innes, R. W. (2021). A better mousetrap to guard against anthracnose disease in bean. Journal of experimental botany, 72(10), 3487-3488. https://doi.org/10.1093/jxb/erab146
Cannon, Steven B, and Innes, Roger W. "A better mousetrap to guard against anthracnose disease in bean." Journal of experimental botany vol. 72,10 (2021): 3487-3488. doi: https://doi.org/10.1093/jxb/erab146
Cannon SB, Innes RW. A better mousetrap to guard against anthracnose disease in bean. J Exp Bot. 2021 May 04;72(10):3487-3488. doi: 10.1093/jxb/erab146. PMID: 33948655.
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Suppression of methionyl transfer RNA synthetase mutants of Salmonella typhimurium by methionine regulatory mutations.

Journal of general microbiology

Chater KF, Lawrence DA, Rowbury RJ, Gross TS.
PMID: 5500020
J Gen Microbiol. 1970 Sep;63(1):121-31. doi: 10.1099/00221287-63-1-121.

No abstract available.

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Chater KF, Lawrence DA, Rowbury RJ, et al. Suppression of methionyl transfer RNA synthetase mutants of Salmonella typhimurium by methionine regulatory mutations. J Gen Microbiol. 1970;63(1):121-31doi: 10.1099/00221287-63-1-121.
Chater, K. F., Lawrence, D. A., Rowbury, R. J., & Gross, T. S. (1970). Suppression of methionyl transfer RNA synthetase mutants of Salmonella typhimurium by methionine regulatory mutations. Journal of general microbiology, 63(1), 121-31. https://doi.org/10.1099/00221287-63-1-121
Chater, K F, et al. "Suppression of methionyl transfer RNA synthetase mutants of Salmonella typhimurium by methionine regulatory mutations." Journal of general microbiology vol. 63,1 (1970): 121-31. doi: https://doi.org/10.1099/00221287-63-1-121
Chater KF, Lawrence DA, Rowbury RJ, Gross TS. Suppression of methionyl transfer RNA synthetase mutants of Salmonella typhimurium by methionine regulatory mutations. J Gen Microbiol. 1970 Sep;63(1):121-31. doi: 10.1099/00221287-63-1-121. PMID: 5500020.
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Human gene mapping 7. Los Angeles conference (1983), Seventh International Workshop on Human Gene Mapping.

Cytogenetics and cell genetics

[No authors listed]
PMID: 6690230
Cytogenet Cell Genet. 1984;37(1):1-666. doi: 10.1159/000132000.

No abstract available.

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Human gene mapping 7. Los Angeles conference (1983), Seventh International Workshop on Human Gene Mapping. Cytogenet Cell Genet. 1984;37(1):1-666doi: 10.1159/000132000.
(1984). Human gene mapping 7. Los Angeles conference (1983), Seventh International Workshop on Human Gene Mapping. Cytogenetics and cell genetics, 37(1), 1-666. https://doi.org/10.1159/000132000
"Human gene mapping 7. Los Angeles conference (1983), Seventh International Workshop on Human Gene Mapping." Cytogenetics and cell genetics vol. 37,1 (1984): 1-666. doi: https://doi.org/10.1159/000132000
Human gene mapping 7. Los Angeles conference (1983), Seventh International Workshop on Human Gene Mapping. Cytogenet Cell Genet. 1984;37(1):1-666. doi: 10.1159/000132000. PMID: 6690230.
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Arrangement of chromosomes in human cells. IV. Distances between centromeres in the metaphase disc.

Bulletin de l'Academie polonaise des sciences. Serie des sciences biologiques

Kowarzyk H, Steinhaus H, Szymaniec S.
PMID: 6043132
Bull Acad Pol Sci Biol. 1967;15(1):21-5.

No abstract available.

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Kowarzyk H, Steinhaus H, Szymaniec S. Arrangement of chromosomes in human cells. IV. Distances between centromeres in the metaphase disc. Bull Acad Pol Sci Biol. 1967;15(1):21-5
Kowarzyk, H., Steinhaus, H., & Szymaniec, S. (1967). Arrangement of chromosomes in human cells. IV. Distances between centromeres in the metaphase disc. Bulletin de l'Academie polonaise des sciences. Serie des sciences biologiques, 15(1), 21-5.
Kowarzyk, H, et al. "Arrangement of chromosomes in human cells. IV. Distances between centromeres in the metaphase disc." Bulletin de l'Academie polonaise des sciences. Serie des sciences biologiques vol. 15,1 (1967): 21-5.
Kowarzyk H, Steinhaus H, Szymaniec S. Arrangement of chromosomes in human cells. IV. Distances between centromeres in the metaphase disc. Bull Acad Pol Sci Biol. 1967;15(1):21-5. PMID: 6043132.
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Human gene mapping 8. Helsinki conference (1985). Eighth International Workshop on Human Gene Mapping. Helsinki, Finland, August 4-10, 1985.

Birth defects original article series

[No authors listed]
PMID: 4092096
Birth Defects Orig Artic Ser. 1985;21(4):1-823.

No abstract available.

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Human gene mapping 8. Helsinki conference (1985). Eighth International Workshop on Human Gene Mapping. Helsinki, Finland, August 4-10, 1985. Birth Defects Orig Artic Ser. 1985;21(4):1-823
(1985). Human gene mapping 8. Helsinki conference (1985). Eighth International Workshop on Human Gene Mapping. Helsinki, Finland, August 4-10, 1985. Birth defects original article series, 21(4), 1-823.
"Human gene mapping 8. Helsinki conference (1985). Eighth International Workshop on Human Gene Mapping. Helsinki, Finland, August 4-10, 1985." Birth defects original article series vol. 21,4 (1985): 1-823.
Human gene mapping 8. Helsinki conference (1985). Eighth International Workshop on Human Gene Mapping. Helsinki, Finland, August 4-10, 1985. Birth Defects Orig Artic Ser. 1985;21(4):1-823. PMID: 4092096.
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R/qtlcharts: interactive graphics for quantitative trait locus mapping.

Genetics

Broman KW.
PMID: 25527287
Genetics. 2015 Feb;199(2):359-61. doi: 10.1534/genetics.114.172742. Epub 2014 Dec 18.

Every data visualization can be improved with some level of interactivity. Interactive graphics hold particular promise for the exploration of high-dimensional data. R/qtlcharts is an R package to create interactive graphics for experiments to map quantitative trait loci (QTL)...

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Broman KW. R/qtlcharts: interactive graphics for quantitative trait locus mapping. Genetics. 2014;199(2):359-61doi: 10.1534/genetics.114.172742.
Broman, K. W. (2015). R/qtlcharts: interactive graphics for quantitative trait locus mapping. Genetics, 199(2), 359-61. https://doi.org/10.1534/genetics.114.172742
Broman, Karl W. "R/qtlcharts: interactive graphics for quantitative trait locus mapping." Genetics vol. 199,2 (2015): 359-61. doi: https://doi.org/10.1534/genetics.114.172742
Broman KW. R/qtlcharts: interactive graphics for quantitative trait locus mapping. Genetics. 2015 Feb;199(2):359-61. doi: 10.1534/genetics.114.172742. Epub 2014 Dec 18. PMID: 25527287; PMCID: PMC4317647.
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The Genomic Era of Clinical Oncology: Integrated Genomic Analysis for Precision Cancer Care.

Cytogenetic and genome research

Surrey LF, Luo M, Chang F, Li MM.
PMID: 28002823
Cytogenet Genome Res. 2016;150(3):162-175. doi: 10.1159/000454655. Epub 2016 Dec 22.

Genomic alterations are important biological markers for cancer diagnosis and prognosis, disease classification, risk stratification, and treatment selection. Chromosomal microarray analysis (CMA) and next-generation sequencing (NGS) technologies are superb new tools for evaluating cancer genomes. These state-of-the-art technologies offer...

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Surrey LF, Luo M, Chang F, et al. The Genomic Era of Clinical Oncology: Integrated Genomic Analysis for Precision Cancer Care. Cytogenet Genome Res. 2016;150(3):162-175doi: 10.1159/000454655.
Surrey, L. F., Luo, M., Chang, F., & Li, M. M. (2016). The Genomic Era of Clinical Oncology: Integrated Genomic Analysis for Precision Cancer Care. Cytogenetic and genome research, 150(3), 162-175. https://doi.org/10.1159/000454655
Surrey, Lea F, et al. "The Genomic Era of Clinical Oncology: Integrated Genomic Analysis for Precision Cancer Care." Cytogenetic and genome research vol. 150,3 (2016): 162-175. doi: https://doi.org/10.1159/000454655
Surrey LF, Luo M, Chang F, Li MM. The Genomic Era of Clinical Oncology: Integrated Genomic Analysis for Precision Cancer Care. Cytogenet Genome Res. 2016;150(3):162-175. doi: 10.1159/000454655. Epub 2016 Dec 22. PMID: 28002823.
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Generating linkage mapping files from Affymetrix SNP chip data.

Bioinformatics (Oxford, England)

Bahlo M, Bromhead CJ.
PMID: 19435744
Bioinformatics. 2009 Aug 01;25(15):1961-2. doi: 10.1093/bioinformatics/btp313. Epub 2009 May 12.

SUMMARY: LINKDATAGEN is a perl tool that generates linkage mapping input files for five different linkage mapping tools using data from all 11 HAPMAP Phase III populations. It provides rudimentary error checks and is easily amended for personal linkage...

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Bahlo M, Bromhead CJ. Generating linkage mapping files from Affymetrix SNP chip data. Bioinformatics. 2009;25(15):1961-2doi: 10.1093/bioinformatics/btp313.
Bahlo, M., & Bromhead, C. J. (2009). Generating linkage mapping files from Affymetrix SNP chip data. Bioinformatics (Oxford, England), 25(15), 1961-2. https://doi.org/10.1093/bioinformatics/btp313
Bahlo, M, and Bromhead, C J. "Generating linkage mapping files from Affymetrix SNP chip data." Bioinformatics (Oxford, England) vol. 25,15 (2009): 1961-2. doi: https://doi.org/10.1093/bioinformatics/btp313
Bahlo M, Bromhead CJ. Generating linkage mapping files from Affymetrix SNP chip data. Bioinformatics. 2009 Aug 01;25(15):1961-2. doi: 10.1093/bioinformatics/btp313. Epub 2009 May 12. PMID: 19435744.
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Showing 13 to 24 of 64 entries