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MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads.

Source code for biology and medicine

Tyakht AV, Popenko AS, Belenikin MS, Altukhov IA, Pavlenko AV, Kostryukova ES, Selezneva OV, Larin AK, Karpova IY, Alexeev DG.
PMID: 23216677
Source Code Biol Med. 2012 Dec 07;7(1):13. doi: 10.1186/1751-0473-7-13.

MALINA is a web service for bioinformatic analysis of whole-genome metagenomic data obtained from human gut microbiota sequencing. As input data, it accepts metagenomic reads of various sequencing technologies, including long reads (such as Sanger and 454 sequencing) and...

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Tyakht AV, Popenko AS, Belenikin MS, et al. MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads. Source Code Biol Med. 2012;7(1):13doi: 10.1186/1751-0473-7-13.
Tyakht, A. V., Popenko, A. S., Belenikin, M. S., Altukhov, I. A., Pavlenko, A. V., Kostryukova, E. S., Selezneva, O. V., Larin, A. K., Karpova, I. Y., & Alexeev, D. G. (2012). MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads. Source code for biology and medicine, 7(1), 13. https://doi.org/10.1186/1751-0473-7-13
Tyakht, Alexander V, et al. "MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads." Source code for biology and medicine vol. 7,1 (2012): 13. doi: https://doi.org/10.1186/1751-0473-7-13
Tyakht AV, Popenko AS, Belenikin MS, Altukhov IA, Pavlenko AV, Kostryukova ES, Selezneva OV, Larin AK, Karpova IY, Alexeev DG. MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads. Source Code Biol Med. 2012 Dec 07;7(1):13. doi: 10.1186/1751-0473-7-13. PMID: 23216677; PMCID: PMC3599743.
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catena-Poly[[[aqua-copper(II)]-bis-[μ-bis-(3,5-dimethyl-1H-pyrazol-4-yl) selenide-κN:N]] dichloride monohydrate].

Acta crystallographica. Section E, Structure reports online

Seredyuk M, Moroz YS, Znovjyak KO, Pavlenko VA, Fritsky IO.
PMID: 21580477
Acta Crystallogr Sect E Struct Rep Online. 2010 Mar 03;66:m363. doi: 10.1107/S1600536810007403.

In the title compound, {[Cu(C(10)H(14)N(4)Se)(2)(H(2)O)]Cl(2)·H(2)O}(n), the Cu(II) ion, lying on a twofold rotation axis, has a square-pyramidal geometry constituted by four N atoms of pyrazolyl groups in the basal plane and an apical O atom of a water mol-ecule....

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Seredyuk M, Moroz YS, Znovjyak KO, et al. catena-Poly[[[aqua-copper(II)]-bis-[μ-bis-(3,5-dimethyl-1H-pyrazol-4-yl) selenide-κN:N]] dichloride monohydrate]. Acta Crystallogr Sect E Struct Rep Online. 2010;66:m363doi: 10.1107/S1600536810007403.
Seredyuk, M., Moroz, Y. S., Znovjyak, K. O., Pavlenko, V. A., & Fritsky, I. O. (2010). catena-Poly[[[aqua-copper(II)]-bis-[μ-bis-(3,5-dimethyl-1H-pyrazol-4-yl) selenide-κN:N]] dichloride monohydrate]. Acta crystallographica. Section E, Structure reports online, 66m363. https://doi.org/10.1107/S1600536810007403
Seredyuk, Maksym, et al. "catena-Poly[[[aqua-copper(II)]-bis-[μ-bis-(3,5-dimethyl-1H-pyrazol-4-yl) selenide-κN:N]] dichloride monohydrate]." Acta crystallographica. Section E, Structure reports online vol. 66 (2010): m363. doi: https://doi.org/10.1107/S1600536810007403
Seredyuk M, Moroz YS, Znovjyak KO, Pavlenko VA, Fritsky IO. catena-Poly[[[aqua-copper(II)]-bis-[μ-bis-(3,5-dimethyl-1H-pyrazol-4-yl) selenide-κN:N]] dichloride monohydrate]. Acta Crystallogr Sect E Struct Rep Online. 2010 Mar 03;66:m363. doi: 10.1107/S1600536810007403. PMID: 21580477; PMCID: PMC2983851.
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Chloridotris(3,5-dimethyl-1H-pyrazole-κN)(formato-κO)copper(II)-dichlorido-bis(3,5-dimethyl-1H-pyrazole-κN)copper(II) (2/1).

Acta crystallographica. Section E, Structure reports online

Davydenko YM, Fritsky IO, Pavlenko VO, Meyer F, Dechert S.
PMID: 21754628
Acta Crystallogr Sect E Struct Rep Online. 2011 Jun 01;67:m732-3. doi: 10.1107/S1600536811016461. Epub 2011 May 07.

The asymmetric unit of the title compound, [Cu(CHO(2))Cl(C(5)H(8)N(2))(3)](2)·[CuCl(2)(C(5)H(8)N(2))(2)] or 2[A]·[B], contains one A mol-ecule and one half-molecule of B, located on a centre of inversion. The Cu(II) environments in A and B are different. In A, the Cu(II) atom...

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Davydenko YM, Fritsky IO, Pavlenko VO, et al. Chloridotris(3,5-dimethyl-1H-pyrazole-κN)(formato-κO)copper(II)-dichlorido-bis(3,5-dimethyl-1H-pyrazole-κN)copper(II) (2/1). Acta Crystallogr Sect E Struct Rep Online. 2011;67:m732-3doi: 10.1107/S1600536811016461.
Davydenko, Y. M., Fritsky, I. O., Pavlenko, V. O., Meyer, F., & Dechert, S. (2011). Chloridotris(3,5-dimethyl-1H-pyrazole-κN)(formato-κO)copper(II)-dichlorido-bis(3,5-dimethyl-1H-pyrazole-κN)copper(II) (2/1). Acta crystallographica. Section E, Structure reports online, 67m732-3. https://doi.org/10.1107/S1600536811016461
Davydenko, Yuliya M, et al. "Chloridotris(3,5-dimethyl-1H-pyrazole-κN)(formato-κO)copper(II)-dichlorido-bis(3,5-dimethyl-1H-pyrazole-κN)copper(II) (2/1)." Acta crystallographica. Section E, Structure reports online vol. 67 (2011): m732-3. doi: https://doi.org/10.1107/S1600536811016461
Davydenko YM, Fritsky IO, Pavlenko VO, Meyer F, Dechert S. Chloridotris(3,5-dimethyl-1H-pyrazole-κN)(formato-κO)copper(II)-dichlorido-bis(3,5-dimethyl-1H-pyrazole-κN)copper(II) (2/1). Acta Crystallogr Sect E Struct Rep Online. 2011 Jun 01;67:m732-3. doi: 10.1107/S1600536811016461. Epub 2011 May 07. PMID: 21754628; PMCID: PMC3120383.
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Genome-wide association study identifies three novel genetic markers associated with elite endurance performance.

Biology of sport

Ahmetov I, Kulemin N, Popov D, Naumov V, Akimov E, Bravy Y, Egorova E, Galeeva A, Generozov E, Kostryukova E, Larin A, Mustafina Lj, Ospanova E, Pavlenko A, Starnes L, Żmijewski P, Alexeev D, Vinogradova O, Govorun V.
PMID: 25729143
Biol Sport. 2015 Mar;32(1):3-9. doi: 10.5604/20831862.1124568. Epub 2014 Oct 21.

To investigate the association between multiple single-nucleotide polymorphisms (SNPs), aerobic performance and elite endurance athlete status in Russians. By using GWAS approach, we examined the association between 1,140,419 SNPs and relative maximal oxygen consumption rate ([Formula: see text]O2max) in...

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Ahmetov I, Kulemin N, Popov D, et al. Genome-wide association study identifies three novel genetic markers associated with elite endurance performance. Biol Sport. 2014;32(1):3-9doi: 10.5604/20831862.1124568.
Ahmetov, I., Kulemin, N., Popov, D., Naumov, V., Akimov, E., Bravy, Y., Egorova, E., Galeeva, A., Generozov, E., Kostryukova, E., Larin, A., Mustafina, L. j., Ospanova, E., Pavlenko, A., Starnes, L., Żmijewski, P., Alexeev, D., Vinogradova, O., & Govorun, V. (2015). Genome-wide association study identifies three novel genetic markers associated with elite endurance performance. Biology of sport, 32(1), 3-9. https://doi.org/10.5604/20831862.1124568
Ahmetov, Ii, et al. "Genome-wide association study identifies three novel genetic markers associated with elite endurance performance." Biology of sport vol. 32,1 (2015): 3-9. doi: https://doi.org/10.5604/20831862.1124568
Ahmetov I, Kulemin N, Popov D, Naumov V, Akimov E, Bravy Y, Egorova E, Galeeva A, Generozov E, Kostryukova E, Larin A, Mustafina Lj, Ospanova E, Pavlenko A, Starnes L, Żmijewski P, Alexeev D, Vinogradova O, Govorun V. Genome-wide association study identifies three novel genetic markers associated with elite endurance performance. Biol Sport. 2015 Mar;32(1):3-9. doi: 10.5604/20831862.1124568. Epub 2014 Oct 21. PMID: 25729143; PMCID: PMC4314597.
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A novel family of (1-aminoalkyl)(trifluoromethyl)- and -(difluoromethyl)phosphinic acids - analogues of α-amino acids.

Beilstein journal of organic chemistry

Pavlenko NV, Oos TI, Yagupolskii YL, Gerus II, Doeller U, Willms L.
PMID: 24778725
Beilstein J Org Chem. 2014 Mar 26;10:722-31. doi: 10.3762/bjoc.10.66. eCollection 2014.

A series of novel (1-aminoalkyl)(trifluoromethyl)- and -(difluoromethyl)phosphinic acids - analogues of proteinogenic and nonproteinogenic α-amino acids were prepared. The synthetic methodology was based on nucleophilic addition of (trifluoromethyl)phosphinic acid or (difluoromethyl)phosphinic acid or its ethyl ester to substrates with...

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Pavlenko NV, Oos TI, Yagupolskii YL, et al. A novel family of (1-aminoalkyl)(trifluoromethyl)- and -(difluoromethyl)phosphinic acids - analogues of α-amino acids. Beilstein J Org Chem. 2014;10:722-31doi: 10.3762/bjoc.10.66.
Pavlenko, N. V., Oos, T. I., Yagupolskii, Y. L., Gerus, I. I., Doeller, U., & Willms, L. (2014). A novel family of (1-aminoalkyl)(trifluoromethyl)- and -(difluoromethyl)phosphinic acids - analogues of α-amino acids. Beilstein journal of organic chemistry, 10722-31. https://doi.org/10.3762/bjoc.10.66
Pavlenko, Natalia V, et al. "A novel family of (1-aminoalkyl)(trifluoromethyl)- and -(difluoromethyl)phosphinic acids - analogues of α-amino acids." Beilstein journal of organic chemistry vol. 10 (2014): 722-31. doi: https://doi.org/10.3762/bjoc.10.66
Pavlenko NV, Oos TI, Yagupolskii YL, Gerus II, Doeller U, Willms L. A novel family of (1-aminoalkyl)(trifluoromethyl)- and -(difluoromethyl)phosphinic acids - analogues of α-amino acids. Beilstein J Org Chem. 2014 Mar 26;10:722-31. doi: 10.3762/bjoc.10.66. eCollection 2014. PMID: 24778725; PMCID: PMC3999843.
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Characteristic of the Nanoparticles Formed on the Carbon Steel Surface Contacting with 3d-Metal Water Salt Solutions in the Open-Air System.

Nanoscale research letters

Lavrynenko OM, Pavlenko OY, Shchukin YS.
PMID: 26847693
Nanoscale Res Lett. 2016 Dec;11(1):67. doi: 10.1186/s11671-016-1267-2. Epub 2016 Feb 04.

The contact of a steel electrode with water dispersion medium in an open-air system leads to the development of various polymorphic iron oxides and oxyhydroxides on the steel surface. Whereas the usage of distilled water causes the obtaining of...

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Lavrynenko OM, Pavlenko OY, Shchukin YS. Characteristic of the Nanoparticles Formed on the Carbon Steel Surface Contacting with 3d-Metal Water Salt Solutions in the Open-Air System. Nanoscale Res Lett. 2016;11(1):67doi: 10.1186/s11671-016-1267-2.
Lavrynenko, O. M., Pavlenko, O. Y., & Shchukin, Y. S. (2016). Characteristic of the Nanoparticles Formed on the Carbon Steel Surface Contacting with 3d-Metal Water Salt Solutions in the Open-Air System. Nanoscale research letters, 11(1), 67. https://doi.org/10.1186/s11671-016-1267-2
Lavrynenko, O M, et al. "Characteristic of the Nanoparticles Formed on the Carbon Steel Surface Contacting with 3d-Metal Water Salt Solutions in the Open-Air System." Nanoscale research letters vol. 11,1 (2016): 67. doi: https://doi.org/10.1186/s11671-016-1267-2
Lavrynenko OM, Pavlenko OY, Shchukin YS. Characteristic of the Nanoparticles Formed on the Carbon Steel Surface Contacting with 3d-Metal Water Salt Solutions in the Open-Air System. Nanoscale Res Lett. 2016 Dec;11(1):67. doi: 10.1186/s11671-016-1267-2. Epub 2016 Feb 04. PMID: 26847693; PMCID: PMC4742462.
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Application of Phagotherapy in the Treatment of Burn Patients (Review).

Sovremennye tekhnologii v meditsine

Leontyev АE, Pavlenko IV, Kovalishena ОV, Saperkin NV, Tulupov АА, Beschastnov VV.
PMID: 34795985
Sovrem Tekhnologii Med. 2021;12(3):95-103. doi: 10.17691/stm2020.12.3.12. Epub 2020 Jun 28.

Treatment of patients with a burn injury is a complex process involving multicomponent multidirectional intensive therapy of the majority of organs and systems damaged by thermal effects on the skin, alternating with repeated surgical interventions aimed at removing nonviable...

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Leontyev АE, Pavlenko IV, Kovalishena ОV, et al. Application of Phagotherapy in the Treatment of Burn Patients (Review). Sovrem Tekhnologii Med. 2020;12(3):95-103doi: 10.17691/stm2020.12.3.12.
Leontyev, �. �. E., Pavlenko, I. V., Kovalishena, �. �. V., Saperkin, N. V., Tulupov, �. �. �. �., & Beschastnov, V. V. (2021). Application of Phagotherapy in the Treatment of Burn Patients (Review). Sovremennye tekhnologii v meditsine, 12(3), 95-103. https://doi.org/10.17691/stm2020.12.3.12
Leontyev, А E, et al. "Application of Phagotherapy in the Treatment of Burn Patients (Review)." Sovremennye tekhnologii v meditsine vol. 12,3 (2021): 95-103. doi: https://doi.org/10.17691/stm2020.12.3.12
Leontyev АE, Pavlenko IV, Kovalishena ОV, Saperkin NV, Tulupov АА, Beschastnov VV. Application of Phagotherapy in the Treatment of Burn Patients (Review). Sovrem Tekhnologii Med. 2021;12(3):95-103. doi: 10.17691/stm2020.12.3.12. Epub 2020 Jun 28. PMID: 34795985; PMCID: PMC8596250.
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Photoemission from Bialkali Photocathodes through an Atomically Thin Protection Layer.

ACS applied materials & interfaces

Liu F, Guo L, DeFazio J, Pavlenko V, Yamamoto M, Moody NA, Yamaguchi H.
PMID: 34935342
ACS Appl Mater Interfaces. 2022 Jan 12;14(1):1710-1717. doi: 10.1021/acsami.1c19393. Epub 2021 Dec 22.

Photocathodes are essential components for various applications requiring photon-to-free-electron conversion, for example, high-sensitivity photodetectors and electron injectors for free-electron lasers. Alkali antimonide thin films are widely used as photocathode materials owing to their high quantum efficiency (QE) in the...

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Liu F, Guo L, DeFazio J, et al. Photoemission from Bialkali Photocathodes through an Atomically Thin Protection Layer. ACS Appl Mater Interfaces. 2021;14(1):1710-1717doi: 10.1021/acsami.1c19393.
Liu, F., Guo, L., DeFazio, J., Pavlenko, V., Yamamoto, M., Moody, N. A., & Yamaguchi, H. (2022). Photoemission from Bialkali Photocathodes through an Atomically Thin Protection Layer. ACS applied materials & interfaces, 14(1), 1710-1717. https://doi.org/10.1021/acsami.1c19393
Liu, Fangze, et al. "Photoemission from Bialkali Photocathodes through an Atomically Thin Protection Layer." ACS applied materials & interfaces vol. 14,1 (2022): 1710-1717. doi: https://doi.org/10.1021/acsami.1c19393
Liu F, Guo L, DeFazio J, Pavlenko V, Yamamoto M, Moody NA, Yamaguchi H. Photoemission from Bialkali Photocathodes through an Atomically Thin Protection Layer. ACS Appl Mater Interfaces. 2022 Jan 12;14(1):1710-1717. doi: 10.1021/acsami.1c19393. Epub 2021 Dec 22. PMID: 34935342.
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A hybrid interferometric system for velocity measurements in shock-wave experiments.

The Review of scientific instruments

Pavlenko AV, Mokrushin SS, Tyaktev AA, Anikin NB.
PMID: 33514209
Rev Sci Instrum. 2021 Jan 01;92(1):015104. doi: 10.1063/5.0029815.

This paper presents a hybrid interferometric system designed to measure the surface velocity of tested specimens in shock-wave experiments. The system integrates the All-Fiber Velocity Interferometer System for Any Reflector (AFVISAR) and the Photonic Doppler Velocimeter (PDV) interferometric channels...

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Pavlenko AV, Mokrushin SS, Tyaktev AA, et al. A hybrid interferometric system for velocity measurements in shock-wave experiments. Rev Sci Instrum. 2021;92(1):015104doi: 10.1063/5.0029815.
Pavlenko, A. V., Mokrushin, S. S., Tyaktev, A. A., & Anikin, N. B. (2021). A hybrid interferometric system for velocity measurements in shock-wave experiments. The Review of scientific instruments, 92(1), 015104. https://doi.org/10.1063/5.0029815
Pavlenko, A V, et al. "A hybrid interferometric system for velocity measurements in shock-wave experiments." The Review of scientific instruments vol. 92,1 (2021): 015104. doi: https://doi.org/10.1063/5.0029815
Pavlenko AV, Mokrushin SS, Tyaktev AA, Anikin NB. A hybrid interferometric system for velocity measurements in shock-wave experiments. Rev Sci Instrum. 2021 Jan 01;92(1):015104. doi: 10.1063/5.0029815. PMID: 33514209.
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Intraspecies multiple chromosomal variations including rare tandem fusion in the Russian Far Eastern endemic evoron vole .

Comparative cytogenetics

Kartavtseva IV, Sheremetyeva IN, Pavlenko MV.
PMID: 34900116
Comp Cytogenet. 2021 Nov 22;15(4):393-411. doi: 10.3897/compcytogen.v15.i4.67112. eCollection 2021.

The vole

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Kartavtseva IV, Sheremetyeva IN, Pavlenko MV. Intraspecies multiple chromosomal variations including rare tandem fusion in the Russian Far Eastern endemic evoron vole . Comp Cytogenet. 2021;15(4):393-411doi: 10.3897/compcytogen.v15.i4.67112.
Kartavtseva, I. V., Sheremetyeva, I. N., & Pavlenko, M. V. (2021). Intraspecies multiple chromosomal variations including rare tandem fusion in the Russian Far Eastern endemic evoron vole . Comparative cytogenetics, 15(4), 393-411. https://doi.org/10.3897/compcytogen.v15.i4.67112
Kartavtseva, Irina V, et al. "Intraspecies multiple chromosomal variations including rare tandem fusion in the Russian Far Eastern endemic evoron vole ." Comparative cytogenetics vol. 15,4 (2021): 393-411. doi: https://doi.org/10.3897/compcytogen.v15.i4.67112
Kartavtseva IV, Sheremetyeva IN, Pavlenko MV. Intraspecies multiple chromosomal variations including rare tandem fusion in the Russian Far Eastern endemic evoron vole . Comp Cytogenet. 2021 Nov 22;15(4):393-411. doi: 10.3897/compcytogen.v15.i4.67112. eCollection 2021. PMID: 34900116; PMCID: PMC8629904.
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Phenomenological theory of uniaxial relaxor ferroelectrics.

Journal of physics. Condensed matter : an Institute of Physics journal

Shirokov VB, Pavlenko AV, Yuzyuk YI.
PMID: 27485244
J Phys Condens Matter. 2016 Oct 05;28(39):395902. doi: 10.1088/0953-8984/28/39/395902. Epub 2016 Aug 03.

A phenomenological thermodynamic theory of uniaxial relaxor strontium barium niobate [Formula: see text] is developed using the Landau-Devonshire approach with two order parameters. The fourth-order thermodynamic potential allowed to explain the shape of the polarization hysteresis loops experimentally observed...

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Shirokov VB, Pavlenko AV, Yuzyuk YI. Phenomenological theory of uniaxial relaxor ferroelectrics. J Phys Condens Matter. 2016;28(39):395902doi: 10.1088/0953-8984/28/39/395902.
Shirokov, V. B., Pavlenko, A. V., & Yuzyuk, Y. I. (2016). Phenomenological theory of uniaxial relaxor ferroelectrics. Journal of physics. Condensed matter : an Institute of Physics journal, 28(39), 395902. https://doi.org/10.1088/0953-8984/28/39/395902
Shirokov, V B, et al. "Phenomenological theory of uniaxial relaxor ferroelectrics." Journal of physics. Condensed matter : an Institute of Physics journal vol. 28,39 (2016): 395902. doi: https://doi.org/10.1088/0953-8984/28/39/395902
Shirokov VB, Pavlenko AV, Yuzyuk YI. Phenomenological theory of uniaxial relaxor ferroelectrics. J Phys Condens Matter. 2016 Oct 05;28(39):395902. doi: 10.1088/0953-8984/28/39/395902. Epub 2016 Aug 03. PMID: 27485244.
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[Certain problems of hereditary pathology].

Sovetskaia meditsina

PAVLENKO SM.
PMID: 14386063
Sov Med. 1955 Feb;19(2):3-9.

No abstract available.

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PAVLENKO SM. Nekotorye voprosy nasledstvennoi patologii. [Certain problems of hereditary pathology]. Sov Med. 1955;19(2):3-9
PAVLENKO, S. M. (1955). Nekotorye voprosy nasledstvennoi patologii. [Certain problems of hereditary pathology]. Sovetskaia meditsina, 19(2), 3-9.
PAVLENKO, S M. "Nekotorye voprosy nasledstvennoi patologii." [Certain problems of hereditary pathology]. Sovetskaia meditsina vol. 19,2 (1955): 3-9.
PAVLENKO SM. Nekotorye voprosy nasledstvennoi patologii. [Certain problems of hereditary pathology]. Sov Med. 1955 Feb;19(2):3-9. Russian. PMID: 14386063.
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