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Evaluation and Optimization of High-Field Asymmetric Waveform Ion-Mobility Spectrometry for Multiplexed Quantitative Site-Specific .

Analytical chemistry

Fang P, Ji Y, Silbern I, Viner R, Oellerich T, Pan KT, Urlaub H.
PMID: 34133129
Anal Chem. 2021 Jun 16; doi: 10.1021/acs.analchem.1c00802. Epub 2021 Jun 16.

The heterogeneity and complexity of glycosylation hinder the depth of site-specific glycoproteomics analysis. High-field asymmetric-waveform ion-mobility spectrometry (FAIMS) has been shown to improve the scope of bottom-up proteomics. The benefits of FAIMS for quantitative

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Fang P, Ji Y, Silbern I, et al. Evaluation and Optimization of High-Field Asymmetric Waveform Ion-Mobility Spectrometry for Multiplexed Quantitative Site-Specific . Anal Chem. 2021;doi: 10.1021/acs.analchem.1c00802.
Fang, P., Ji, Y., Silbern, I., Viner, R., Oellerich, T., Pan, K. T., & Urlaub, H. (2021). Evaluation and Optimization of High-Field Asymmetric Waveform Ion-Mobility Spectrometry for Multiplexed Quantitative Site-Specific . Analytical chemistry, . https://doi.org/10.1021/acs.analchem.1c00802
Fang, Pan, et al. "Evaluation and Optimization of High-Field Asymmetric Waveform Ion-Mobility Spectrometry for Multiplexed Quantitative Site-Specific ." Analytical chemistry vol. (2021). doi: https://doi.org/10.1021/acs.analchem.1c00802
Fang P, Ji Y, Silbern I, Viner R, Oellerich T, Pan KT, Urlaub H. Evaluation and Optimization of High-Field Asymmetric Waveform Ion-Mobility Spectrometry for Multiplexed Quantitative Site-Specific . Anal Chem. 2021 Jun 16; doi: 10.1021/acs.analchem.1c00802. Epub 2021 Jun 16. PMID: 34133129.
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Toward a Paradigm Shift in the Therapeutic Approach to Fuchs Endothelial Corneal Dystrophy.

JAMA ophthalmology

Kocaba V, Oellerich S, Melles GRJ.
PMID: 33599692
JAMA Ophthalmol. 2021 Apr 01;139(4):431-432. doi: 10.1001/jamaophthalmol.2020.7041.

No abstract available.

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Kocaba V, Oellerich S, Melles GRJ. Toward a Paradigm Shift in the Therapeutic Approach to Fuchs Endothelial Corneal Dystrophy. JAMA Ophthalmol. 2021;139(4):431-432doi: 10.1001/jamaophthalmol.2020.7041.
Kocaba, V., Oellerich, S., & Melles, G. R. J. (2021). Toward a Paradigm Shift in the Therapeutic Approach to Fuchs Endothelial Corneal Dystrophy. JAMA ophthalmology, 139(4), 431-432. https://doi.org/10.1001/jamaophthalmol.2020.7041
Kocaba, Viridiana, et al. "Toward a Paradigm Shift in the Therapeutic Approach to Fuchs Endothelial Corneal Dystrophy." JAMA ophthalmology vol. 139,4 (2021): 431-432. doi: https://doi.org/10.1001/jamaophthalmol.2020.7041
Kocaba V, Oellerich S, Melles GRJ. Toward a Paradigm Shift in the Therapeutic Approach to Fuchs Endothelial Corneal Dystrophy. JAMA Ophthalmol. 2021 Apr 01;139(4):431-432. doi: 10.1001/jamaophthalmol.2020.7041. PMID: 33599692.
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Quantitative proteomics identifies biomarkers to distinguish pulmonary from head and neck squamous cell carcinomas by immunohistochemistry.

The journal of pathology. Clinical research

Richter A, Fichtner A, Joost J, Brockmeyer P, Kauffmann P, Schliephake H, Hammerstein-Equord A, Kueffer S, Urlaub H, Oellerich T, Ströbel P, Bohnenberger H, Bremmer F.
PMID: 34647699
J Pathol Clin Res. 2021 Oct 14; doi: 10.1002/cjp2.244. Epub 2021 Oct 14.

The differentiation between a pulmonary metastasis and a newly developed squamous cell carcinoma of the lung in patients with prior head and neck squamous cell carcinoma (HNSCC) is difficult due to a lack of biomarkers but is crucially important...

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Richter A, Fichtner A, Joost J, et al. Quantitative proteomics identifies biomarkers to distinguish pulmonary from head and neck squamous cell carcinomas by immunohistochemistry. J Pathol Clin Res. 2021;doi: 10.1002/cjp2.244.
Richter, A., Fichtner, A., Joost, J., Brockmeyer, P., Kauffmann, P., Schliephake, H., Hammerstein-Equord, A., Kueffer, S., Urlaub, H., Oellerich, T., Ströbel, P., Bohnenberger, H., & Bremmer, F. (2021). Quantitative proteomics identifies biomarkers to distinguish pulmonary from head and neck squamous cell carcinomas by immunohistochemistry. The journal of pathology. Clinical research, . https://doi.org/10.1002/cjp2.244
Richter, Annika, et al. "Quantitative proteomics identifies biomarkers to distinguish pulmonary from head and neck squamous cell carcinomas by immunohistochemistry." The journal of pathology. Clinical research vol. (2021). doi: https://doi.org/10.1002/cjp2.244
Richter A, Fichtner A, Joost J, Brockmeyer P, Kauffmann P, Schliephake H, Hammerstein-Equord A, Kueffer S, Urlaub H, Oellerich T, Ströbel P, Bohnenberger H, Bremmer F. Quantitative proteomics identifies biomarkers to distinguish pulmonary from head and neck squamous cell carcinomas by immunohistochemistry. J Pathol Clin Res. 2021 Oct 14; doi: 10.1002/cjp2.244. Epub 2021 Oct 14. PMID: 34647699.
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Absolute or Relative Quantification of Donor-derived Cell-free DNA in Kidney Transplant Recipients: Case Series.

Transplantation direct

Osmanodja B, Akifova A, Budde K, Choi M, Oellerich M, Schütz E, Beck J.
PMID: 34712778
Transplant Direct. 2021 Oct 22;7(11):e778. doi: 10.1097/TXD.0000000000001237. eCollection 2021 Nov.

BACKGROUND: Donor-derived cell-free DNA (dd-cfDNA) is increasingly recognized as a valuable biomarker for acute transplant injury, with possible indications in the detection of cellular or humoral rejection and the guidance of immunosuppressive therapy. There is an ongoing debate on...

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Osmanodja B, Akifova A, Budde K, et al. Absolute or Relative Quantification of Donor-derived Cell-free DNA in Kidney Transplant Recipients: Case Series. Transplant Direct. 2021;7(11):e778doi: 10.1097/TXD.0000000000001237.
Osmanodja, B., Akifova, A., Budde, K., Choi, M., Oellerich, M., Schütz, E., & Beck, J. (2021). Absolute or Relative Quantification of Donor-derived Cell-free DNA in Kidney Transplant Recipients: Case Series. Transplantation direct, 7(11), e778. https://doi.org/10.1097/TXD.0000000000001237
Osmanodja, Bilgin, et al. "Absolute or Relative Quantification of Donor-derived Cell-free DNA in Kidney Transplant Recipients: Case Series." Transplantation direct vol. 7,11 (2021): e778. doi: https://doi.org/10.1097/TXD.0000000000001237
Osmanodja B, Akifova A, Budde K, Choi M, Oellerich M, Schütz E, Beck J. Absolute or Relative Quantification of Donor-derived Cell-free DNA in Kidney Transplant Recipients: Case Series. Transplant Direct. 2021 Oct 22;7(11):e778. doi: 10.1097/TXD.0000000000001237. eCollection 2021 Nov. PMID: 34712778; PMCID: PMC8547915.
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Corrigendum: Characterisation of mental health conditions in social media using Informed Deep Learning.

Scientific reports

Gkotsis G, Oellrich A, Velupillai S, Liakata M, Hubbard TJP, Dobson RJB, Dutta R.
PMID: 28507325
Sci Rep. 2017 May 16;7:46813. doi: 10.1038/srep46813.

No abstract available.

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Gkotsis G, Oellrich A, Velupillai S, et al. Corrigendum: Characterisation of mental health conditions in social media using Informed Deep Learning. Sci Rep. 2017;7:46813doi: 10.1038/srep46813.
Gkotsis, G., Oellrich, A., Velupillai, S., Liakata, M., Hubbard, T. J. P., Dobson, R. J. B., & Dutta, R. (2017). Corrigendum: Characterisation of mental health conditions in social media using Informed Deep Learning. Scientific reports, 746813. https://doi.org/10.1038/srep46813
Gkotsis, George, et al. "Corrigendum: Characterisation of mental health conditions in social media using Informed Deep Learning." Scientific reports vol. 7 (2017): 46813. doi: https://doi.org/10.1038/srep46813
Gkotsis G, Oellrich A, Velupillai S, Liakata M, Hubbard TJP, Dobson RJB, Dutta R. Corrigendum: Characterisation of mental health conditions in social media using Informed Deep Learning. Sci Rep. 2017 May 16;7:46813. doi: 10.1038/srep46813. PMID: 28507325; PMCID: PMC5432835.
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Corrigendum: A simple and versatile design concept for fluorophore derivatives with intramolecular photostabilization.

Nature communications

van der Velde JHM, Oelerich J, Huang J, Smit JH, Jazi AA, Galiani S, Kolmakov K, Gouridis G, Eggeling C, Herrmann A, Roelfes G, Cordes T.
PMID: 29143808
Nat Commun. 2017 Nov 16;8:16173. doi: 10.1038/ncomms16173.

This corrects the article DOI: 10.1038/ncomms10144.

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van der Velde JHM, Oelerich J, Huang J, et al. Corrigendum: A simple and versatile design concept for fluorophore derivatives with intramolecular photostabilization. Nat Commun. 2017;8:16173doi: 10.1038/ncomms16173.
van der Velde, J. H. M., Oelerich, J., Huang, J., Smit, J. H., Jazi, A. A., Galiani, S., Kolmakov, K., Gouridis, G., Eggeling, C., Herrmann, A., Roelfes, G., & Cordes, T. (2017). Corrigendum: A simple and versatile design concept for fluorophore derivatives with intramolecular photostabilization. Nature communications, 816173. https://doi.org/10.1038/ncomms16173
van der Velde, Jasper H M, et al. "Corrigendum: A simple and versatile design concept for fluorophore derivatives with intramolecular photostabilization." Nature communications vol. 8 (2017): 16173. doi: https://doi.org/10.1038/ncomms16173
van der Velde JHM, Oelerich J, Huang J, Smit JH, Jazi AA, Galiani S, Kolmakov K, Gouridis G, Eggeling C, Herrmann A, Roelfes G, Cordes T. Corrigendum: A simple and versatile design concept for fluorophore derivatives with intramolecular photostabilization. Nat Commun. 2017 Nov 16;8:16173. doi: 10.1038/ncomms16173. PMID: 29143808; PMCID: PMC5703763.
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Long-Term Outcomes of Bowman Layer Inlay Transplantation for the Treatment of Progressive Keratoconus.

Cornea

van der Star L, van Dijk K, Vasiliauskaitė I, Dapena I, Oellerich S, Melles GRJ.
PMID: 34620767
Cornea. 2021 Oct 06; doi: 10.1097/ICO.0000000000002871. Epub 2021 Oct 06.

PURPOSE: To report long-term clinical outcomes and estimated success rates after Bowman layer (BL) inlay transplantation in eyes treated for progressive keratoconus (KC).METHODS: Thirty-five eyes (29 patients) with progressive KC underwent BL inlay transplantation. Best-corrected spectacle and contact lens...

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van der Star L, van Dijk K, Vasiliauskaitė I, et al. Long-Term Outcomes of Bowman Layer Inlay Transplantation for the Treatment of Progressive Keratoconus. Cornea. 2021;doi: 10.1097/ICO.0000000000002871.
van der Star, L., van Dijk, K., Vasiliauskaitė, I., Dapena, I., Oellerich, S., & Melles, G. R. J. (2021). Long-Term Outcomes of Bowman Layer Inlay Transplantation for the Treatment of Progressive Keratoconus. Cornea, . https://doi.org/10.1097/ICO.0000000000002871
van der Star, Lydia, et al. "Long-Term Outcomes of Bowman Layer Inlay Transplantation for the Treatment of Progressive Keratoconus." Cornea vol. (2021). doi: https://doi.org/10.1097/ICO.0000000000002871
van der Star L, van Dijk K, Vasiliauskaitė I, Dapena I, Oellerich S, Melles GRJ. Long-Term Outcomes of Bowman Layer Inlay Transplantation for the Treatment of Progressive Keratoconus. Cornea. 2021 Oct 06; doi: 10.1097/ICO.0000000000002871. Epub 2021 Oct 06. PMID: 34620767.
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WITHDRAWN: Multi-center evaluation of analytical performance of the microparticle enzyme immunoassay for sirolimus.

Clinical biochemistry

Wilson D, Johnston F, Holt D, Moreton M, Engelmayer J, Gaulier JM, Luthe H, Marquet P, Moscato D, Oellerich M, Mosso R, Streit F, Brunet M, Fillee C, Schmid R, Wallemacq P, Barnes G.
PMID: 18375204
Clin Biochem. 2006 Oct 14; doi: 10.1016/j.clinbiochem.2006.10.003. Epub 2006 Oct 14.

The Publisher regrets that this article is an accidental duplication of an article that has already been published in Clin. Biochem. 39 (2006) 378-386, doi:10.1016/j.clinbiochem.2006.01.017. The duplicate article has therefore been withdrawn. This article has been withdrawn consistent with...

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Wilson D, Johnston F, Holt D, et al. WITHDRAWN: Multi-center evaluation of analytical performance of the microparticle enzyme immunoassay for sirolimus. Clin Biochem. 2006;doi: 10.1016/j.clinbiochem.2006.10.003.
Wilson, D., Johnston, F., Holt, D., Moreton, M., Engelmayer, J., Gaulier, J. M., Luthe, H., Marquet, P., Moscato, D., Oellerich, M., Mosso, R., Streit, F., Brunet, M., Fillee, C., Schmid, R., Wallemacq, P., & Barnes, G. (2006). WITHDRAWN: Multi-center evaluation of analytical performance of the microparticle enzyme immunoassay for sirolimus. Clinical biochemistry, . https://doi.org/10.1016/j.clinbiochem.2006.10.003
Wilson, D, et al. "WITHDRAWN: Multi-center evaluation of analytical performance of the microparticle enzyme immunoassay for sirolimus." Clinical biochemistry vol. (2006). doi: https://doi.org/10.1016/j.clinbiochem.2006.10.003
Wilson D, Johnston F, Holt D, Moreton M, Engelmayer J, Gaulier JM, Luthe H, Marquet P, Moscato D, Oellerich M, Mosso R, Streit F, Brunet M, Fillee C, Schmid R, Wallemacq P, Barnes G. WITHDRAWN: Multi-center evaluation of analytical performance of the microparticle enzyme immunoassay for sirolimus. Clin Biochem. 2006 Oct 14; doi: 10.1016/j.clinbiochem.2006.10.003. Epub 2006 Oct 14. PMID: 18375204.
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Mechanism of intramolecular photostabilization in self-healing cyanine fluorophores.

Chemphyschem : a European journal of chemical physics and physical chemistry

van der Velde JH, Ploetz E, Hiermaier M, Oelerich J, de Vries JW, Roelfes G, Cordes T.
PMID: 24302532
Chemphyschem. 2013 Dec 16;14(18):4084-93. doi: 10.1002/cphc.201300785. Epub 2013 Dec 02.

Organic fluorophores, which are popular labels for microscopy applications, intrinsically suffer from transient and irreversible excursions to dark-states. An alternative to adding photostabilizers at high concentrations to the imaging buffer relies on the direct linkage to the fluorophore. However,...

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van der Velde JH, Ploetz E, Hiermaier M, et al. Mechanism of intramolecular photostabilization in self-healing cyanine fluorophores. Chemphyschem. 2013;14(18):4084-93doi: 10.1002/cphc.201300785.
van der Velde, J. H., Ploetz, E., Hiermaier, M., Oelerich, J., de Vries, J. W., Roelfes, G., & Cordes, T. (2013). Mechanism of intramolecular photostabilization in self-healing cyanine fluorophores. Chemphyschem : a European journal of chemical physics and physical chemistry, 14(18), 4084-93. https://doi.org/10.1002/cphc.201300785
van der Velde, Jasper H M, et al. "Mechanism of intramolecular photostabilization in self-healing cyanine fluorophores." Chemphyschem : a European journal of chemical physics and physical chemistry vol. 14,18 (2013): 4084-93. doi: https://doi.org/10.1002/cphc.201300785
van der Velde JH, Ploetz E, Hiermaier M, Oelerich J, de Vries JW, Roelfes G, Cordes T. Mechanism of intramolecular photostabilization in self-healing cyanine fluorophores. Chemphyschem. 2013 Dec 16;14(18):4084-93. doi: 10.1002/cphc.201300785. Epub 2013 Dec 02. PMID: 24302532.
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Characterisation of mental health conditions in social media using Informed Deep Learning.

Scientific reports

Gkotsis G, Oellrich A, Velupillai S, Liakata M, Hubbard TJ, Dobson RJ, Dutta R.
PMID: 28327593
Sci Rep. 2017 Mar 22;7:45141. doi: 10.1038/srep45141.

The number of people affected by mental illness is on the increase and with it the burden on health and social care use, as well as the loss of both productivity and quality-adjusted life-years. Natural language processing of electronic...

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Gkotsis G, Oellrich A, Velupillai S, et al. Characterisation of mental health conditions in social media using Informed Deep Learning. Sci Rep. 2017;7:45141doi: 10.1038/srep45141.
Gkotsis, G., Oellrich, A., Velupillai, S., Liakata, M., Hubbard, T. J., Dobson, R. J., & Dutta, R. (2017). Characterisation of mental health conditions in social media using Informed Deep Learning. Scientific reports, 745141. https://doi.org/10.1038/srep45141
Gkotsis, George, et al. "Characterisation of mental health conditions in social media using Informed Deep Learning." Scientific reports vol. 7 (2017): 45141. doi: https://doi.org/10.1038/srep45141
Gkotsis G, Oellrich A, Velupillai S, Liakata M, Hubbard TJ, Dobson RJ, Dutta R. Characterisation of mental health conditions in social media using Informed Deep Learning. Sci Rep. 2017 Mar 22;7:45141. doi: 10.1038/srep45141. PMID: 28327593; PMCID: PMC5361083.
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Linking gene expression to phenotypes via pathway information.

Journal of biomedical semantics

Papatheodorou I, Oellrich A, Smedley D.
PMID: 25901272
J Biomed Semantics. 2015 Apr 11;6:17. doi: 10.1186/s13326-015-0013-5. eCollection 2015.

Establishing robust links among gene expression, pathways and phenotypes is critical for understanding diseases and developing treatments. In recent years there have been many efforts to develop the computational means to traverse from genes to gene expression, model pathways...

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Papatheodorou I, Oellrich A, Smedley D. Linking gene expression to phenotypes via pathway information. J Biomed Semantics. 2015;6:17doi: 10.1186/s13326-015-0013-5.
Papatheodorou, I., Oellrich, A., & Smedley, D. (2015). Linking gene expression to phenotypes via pathway information. Journal of biomedical semantics, 617. https://doi.org/10.1186/s13326-015-0013-5
Papatheodorou, Irene, et al. "Linking gene expression to phenotypes via pathway information." Journal of biomedical semantics vol. 6 (2015): 17. doi: https://doi.org/10.1186/s13326-015-0013-5
Papatheodorou I, Oellrich A, Smedley D. Linking gene expression to phenotypes via pathway information. J Biomed Semantics. 2015 Apr 11;6:17. doi: 10.1186/s13326-015-0013-5. eCollection 2015. PMID: 25901272; PMCID: PMC4404592.
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Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology.

Journal of biomedical semantics

Oellrich A, Gkoutos GV, Hoehndorf R, Rebholz-Schuhmann D.
PMID: 23046555
J Biomed Semantics. 2012 Sep 21;3:S1. doi: 10.1186/2041-1480-3-S2-S1. Epub 2012 Sep 21.

Researchers use animal studies to better understand human diseases. In recent years, large-scale phenotype studies such as Phenoscape and EuroPhenome have been initiated to identify genetic causes of a species' phenome. Species-specific phenotype ontologies are required to capture and...

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Oellrich A, Gkoutos GV, Hoehndorf R, et al. Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology. J Biomed Semantics. 2012;3:S1doi: 10.1186/2041-1480-3-S2-S1.
Oellrich, A., Gkoutos, G. V., Hoehndorf, R., & Rebholz-Schuhmann, D. (2012). Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology. Journal of biomedical semantics, 3S1. https://doi.org/10.1186/2041-1480-3-S2-S1
Oellrich, Anika, et al. "Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology." Journal of biomedical semantics vol. 3 (2012): S1. doi: https://doi.org/10.1186/2041-1480-3-S2-S1
Oellrich A, Gkoutos GV, Hoehndorf R, Rebholz-Schuhmann D. Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology. J Biomed Semantics. 2012 Sep 21;3:S1. doi: 10.1186/2041-1480-3-S2-S1. Epub 2012 Sep 21. PMID: 23046555; PMCID: PMC3448526.
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