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Frequencies and patterns of microbiology test requests from primary care in Oxfordshire, UK, 2008-2018: a retrospective cohort study of electronic health records to inform point-of-care testing.

BMJ open

Ordóñez-Mena JM, Fanshawe TR, Foster D, Andersson M, Oakley S, Stoesser N, Walker AS, Hayward G.
PMID: 34815274
BMJ Open. 2021 Nov 23;11(11):e048527. doi: 10.1136/bmjopen-2020-048527.

OBJECTIVES: To inform point-of-care test (POCT) development, we quantified the primary care demand for laboratory microbiology tests by describing their frequencies overall, frequencies of positives, most common organisms identified, temporal trends in testing and patterns of cotesting on the...

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Ordóñez-Mena JM, Fanshawe TR, Foster D, et al. Frequencies and patterns of microbiology test requests from primary care in Oxfordshire, UK, 2008-2018: a retrospective cohort study of electronic health records to inform point-of-care testing. BMJ Open. 2021;11(11):e048527doi: 10.1136/bmjopen-2020-048527.
Ordóñez-Mena, J. M., Fanshawe, T. R., Foster, D., Andersson, M., Oakley, S., Stoesser, N., Walker, A. S., & Hayward, G. (2021). Frequencies and patterns of microbiology test requests from primary care in Oxfordshire, UK, 2008-2018: a retrospective cohort study of electronic health records to inform point-of-care testing. BMJ open, 11(11), e048527. https://doi.org/10.1136/bmjopen-2020-048527
Ordóñez-Mena, J M, et al. "Frequencies and patterns of microbiology test requests from primary care in Oxfordshire, UK, 2008-2018: a retrospective cohort study of electronic health records to inform point-of-care testing." BMJ open vol. 11,11 (2021): e048527. doi: https://doi.org/10.1136/bmjopen-2020-048527
Ordóñez-Mena JM, Fanshawe TR, Foster D, Andersson M, Oakley S, Stoesser N, Walker AS, Hayward G. Frequencies and patterns of microbiology test requests from primary care in Oxfordshire, UK, 2008-2018: a retrospective cohort study of electronic health records to inform point-of-care testing. BMJ Open. 2021 Nov 23;11(11):e048527. doi: 10.1136/bmjopen-2020-048527. PMID: 34815274; PMCID: PMC8611454.
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Qualitative Needs Assessment for the Development of Chronic Pain Group Medical Visits.

Journal of patient experience

Wile KA, Roy S, Stuckey H, Zimmerman E, Bailey D, Parascando JA, Reedy-Cooper A.
PMID: 34869851
J Patient Exp. 2021 Nov 26;8:23743735211063122. doi: 10.1177/23743735211063122. eCollection 2021.

Group medical visits (GMVs) for patients with chronic pain are becoming more accessible and have been shown to be successful in furthering patient education on multidisciplinary, nonopioid interventions. Unfortunately, evidence suggests that many group visit models lack sustainability due...

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Wile KA, Roy S, Stuckey H, et al. Qualitative Needs Assessment for the Development of Chronic Pain Group Medical Visits. J Patient Exp. 2021;8:23743735211063122doi: 10.1177/23743735211063122.
Wile, K. A., Roy, S., Stuckey, H., Zimmerman, E., Bailey, D., Parascando, J. A., & Reedy-Cooper, A. (2021). Qualitative Needs Assessment for the Development of Chronic Pain Group Medical Visits. Journal of patient experience, 823743735211063122. https://doi.org/10.1177/23743735211063122
Wile, Kevin A, et al. "Qualitative Needs Assessment for the Development of Chronic Pain Group Medical Visits." Journal of patient experience vol. 8 (2021): 23743735211063122. doi: https://doi.org/10.1177/23743735211063122
Wile KA, Roy S, Stuckey H, Zimmerman E, Bailey D, Parascando JA, Reedy-Cooper A. Qualitative Needs Assessment for the Development of Chronic Pain Group Medical Visits. J Patient Exp. 2021 Nov 26;8:23743735211063122. doi: 10.1177/23743735211063122. eCollection 2021. PMID: 34869851; PMCID: PMC8640981.
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Machine-learning informed macro-meteorological models for the near-maritime environment.

Applied optics

Jellen C, Oakley M, Nelson C, Burkhardt J, Brownell C.
PMID: 33983186
Appl Opt. 2021 Apr 10;60(11):2938-2951. doi: 10.1364/AO.416680.

Macro-meteorological models predict optical turbulence as a function of weather data. Existing models often struggle to accurately predict the rapid fluctuations in

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Jellen C, Oakley M, Nelson C, et al. Machine-learning informed macro-meteorological models for the near-maritime environment. Appl Opt. 2021;60(11):2938-2951doi: 10.1364/AO.416680.
Jellen, C., Oakley, M., Nelson, C., Burkhardt, J., & Brownell, C. (2021). Machine-learning informed macro-meteorological models for the near-maritime environment. Applied optics, 60(11), 2938-2951. https://doi.org/10.1364/AO.416680
Jellen, Christopher, et al. "Machine-learning informed macro-meteorological models for the near-maritime environment." Applied optics vol. 60,11 (2021): 2938-2951. doi: https://doi.org/10.1364/AO.416680
Jellen C, Oakley M, Nelson C, Burkhardt J, Brownell C. Machine-learning informed macro-meteorological models for the near-maritime environment. Appl Opt. 2021 Apr 10;60(11):2938-2951. doi: 10.1364/AO.416680. PMID: 33983186.
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Integrated serological surveillance of acute febrile illness in the context of a lymphatic filariasis survey in Timor-Leste: a pilot study using dried blood spots.

Transactions of the Royal Society of Tropical Medicine and Hygiene

Arkell P, Angelina J, do Carmo Vieira A, Wapling J, Marr I, Monteiro M, Matthews A, Amaral S, da Conceicao V, Kim SH, Bailey D, Yan J, Fancourt's NSS, Vaz Nery S, Francis JR.
PMID: 34850241
Trans R Soc Trop Med Hyg. 2021 Nov 27; doi: 10.1093/trstmh/trab164. Epub 2021 Nov 27.

BACKGROUND: Acute febrile illnesses (AFIs), including dengue, scrub typhus and leptospirosis, cause significant morbidity and mortality in Southeast Asia. Serological surveillance can be used to investigate the force and distribution of infections. Dried blood spot (DBS) samples are an...

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Arkell P, Angelina J, do Carmo Vieira A, et al. Integrated serological surveillance of acute febrile illness in the context of a lymphatic filariasis survey in Timor-Leste: a pilot study using dried blood spots. Trans R Soc Trop Med Hyg. 2021;doi: 10.1093/trstmh/trab164.
Arkell, P., Angelina, J., do Carmo Vieira, A., Wapling, J., Marr, I., Monteiro, M., Matthews, A., Amaral, S., da Conceicao, V., Kim, S. H., Bailey, D., Yan, J., Fancourt's, N. S. S., Vaz Nery, S., & Francis, J. R. (2021). Integrated serological surveillance of acute febrile illness in the context of a lymphatic filariasis survey in Timor-Leste: a pilot study using dried blood spots. Transactions of the Royal Society of Tropical Medicine and Hygiene, . https://doi.org/10.1093/trstmh/trab164
Arkell, Paul, et al. "Integrated serological surveillance of acute febrile illness in the context of a lymphatic filariasis survey in Timor-Leste: a pilot study using dried blood spots." Transactions of the Royal Society of Tropical Medicine and Hygiene vol. (2021). doi: https://doi.org/10.1093/trstmh/trab164
Arkell P, Angelina J, do Carmo Vieira A, Wapling J, Marr I, Monteiro M, Matthews A, Amaral S, da Conceicao V, Kim SH, Bailey D, Yan J, Fancourt's NSS, Vaz Nery S, Francis JR. Integrated serological surveillance of acute febrile illness in the context of a lymphatic filariasis survey in Timor-Leste: a pilot study using dried blood spots. Trans R Soc Trop Med Hyg. 2021 Nov 27; doi: 10.1093/trstmh/trab164. Epub 2021 Nov 27. PMID: 34850241.
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P300 Evoked Response Potentials Patterns in Different Complex Concussion Phenotypes.

Neurology

Ike B, Watts L, Oakley DS, Pita M, Mortazavi M.
PMID: 34969883
Neurology. 2022 Jan 04;98(1):S4-S5. doi: 10.1212/01.wnl.0000801772.37790.d2.

OBJECTIVE: Determine the utility of P300 Evoked Response Potentials (ERP) voltage patterns in predicting phenotypical sequelae of patients with complex concussions or Persistent Post Concussive Symptoms (PPCS).BACKGROUND: ERPs have been used to aid in the diagnosis of multiple neurologic...

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Ike B, Watts L, Oakley DS, et al. P300 Evoked Response Potentials Patterns in Different Complex Concussion Phenotypes. Neurology. 2022;98(1):S4-S5doi: 10.1212/01.wnl.0000801772.37790.d2.
Ike, B., Watts, L., Oakley, D. S., Pita, M., & Mortazavi, M. (2022). P300 Evoked Response Potentials Patterns in Different Complex Concussion Phenotypes. Neurology, 98(1), S4-S5. https://doi.org/10.1212/01.wnl.0000801772.37790.d2
Ike, Basil, et al. "P300 Evoked Response Potentials Patterns in Different Complex Concussion Phenotypes." Neurology vol. 98,1 (2022): S4-S5. doi: https://doi.org/10.1212/01.wnl.0000801772.37790.d2
Ike B, Watts L, Oakley DS, Pita M, Mortazavi M. P300 Evoked Response Potentials Patterns in Different Complex Concussion Phenotypes. Neurology. 2022 Jan 04;98(1):S4-S5. doi: 10.1212/01.wnl.0000801772.37790.d2. PMID: 34969883.
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A commentary on "Endoscopic versus percutaneous biliary drainage for resectable pancreatic head cancer with hyperbilirubinemia and impact on pancreaticoduodenectomy: A randomized controlled study" [Int. J. Surg. 93 (2021 Sept 1) 106043].

International journal of surgery (London, England)

Radulović A, Ganesananthan S, Oakley Z.
PMID: 34688931
Int J Surg. 2021 Nov;95:106144. doi: 10.1016/j.ijsu.2021.106144. Epub 2021 Oct 21.

No abstract available.

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Radulović A, Ganesananthan S, Oakley Z. A commentary on "Endoscopic versus percutaneous biliary drainage for resectable pancreatic head cancer with hyperbilirubinemia and impact on pancreaticoduodenectomy: A randomized controlled study" [Int. J. Surg. 93 (2021 Sept 1) 106043]. Int J Surg. 2021;95:106144doi: 10.1016/j.ijsu.2021.106144.
Radulović, A., Ganesananthan, S., & Oakley, Z. (2021). A commentary on "Endoscopic versus percutaneous biliary drainage for resectable pancreatic head cancer with hyperbilirubinemia and impact on pancreaticoduodenectomy: A randomized controlled study" [Int. J. Surg. 93 (2021 Sept 1) 106043]. International journal of surgery (London, England), 95106144. https://doi.org/10.1016/j.ijsu.2021.106144
Radulović, Aleksandar, et al. "A commentary on "Endoscopic versus percutaneous biliary drainage for resectable pancreatic head cancer with hyperbilirubinemia and impact on pancreaticoduodenectomy: A randomized controlled study" [Int. J. Surg. 93 (2021 Sept 1) 106043]." International journal of surgery (London, England) vol. 95 (2021): 106144. doi: https://doi.org/10.1016/j.ijsu.2021.106144
Radulović A, Ganesananthan S, Oakley Z. A commentary on "Endoscopic versus percutaneous biliary drainage for resectable pancreatic head cancer with hyperbilirubinemia and impact on pancreaticoduodenectomy: A randomized controlled study" [Int. J. Surg. 93 (2021 Sept 1) 106043]. Int J Surg. 2021 Nov;95:106144. doi: 10.1016/j.ijsu.2021.106144. Epub 2021 Oct 21. PMID: 34688931.
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Editorial.

Monash bioethics review

Oakley J.
PMID: 34913157
Monash Bioeth Rev. 2021 Oct;39(2):141-142. doi: 10.1007/s40592-021-00144-2. Epub 2021 Dec 15.

No abstract available.

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Oakley J. Editorial. Monash Bioeth Rev. 2021;39(2):141-142doi: 10.1007/s40592-021-00144-2.
Oakley, J. (2021). Editorial. Monash bioethics review, 39(2), 141-142. https://doi.org/10.1007/s40592-021-00144-2
Oakley, Justin. "Editorial." Monash bioethics review vol. 39,2 (2021): 141-142. doi: https://doi.org/10.1007/s40592-021-00144-2
Oakley J. Editorial. Monash Bioeth Rev. 2021 Oct;39(2):141-142. doi: 10.1007/s40592-021-00144-2. Epub 2021 Dec 15. PMID: 34913157.
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Antimicrobial resistance determinants are associated with .

Microbial genomics

Young BC, Wu CH, Charlesworth J, Earle S, Price JR, Gordon NC, Cole K, Dunn L, Liu E, Oakley S, Godwin H, Fung R, Miller R, Knox K, Votintseva A, Quan TP, Tilley R, Scarborough M, Crook DW, Peto TE, Walker AS, Llewelyn MJ, Wilson DJ.
PMID: 34812717
Microb Genom. 2021 Nov;7(11). doi: 10.1099/mgen.0.000700.

No abstract available.

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Young BC, Wu CH, Charlesworth J, et al. Antimicrobial resistance determinants are associated with . Microb Genom. 2021;7(11)doi: 10.1099/mgen.0.000700.
Young, B. C., Wu, C. H., Charlesworth, J., Earle, S., Price, J. R., Gordon, N. C., Cole, K., Dunn, L., Liu, E., Oakley, S., Godwin, H., Fung, R., Miller, R., Knox, K., Votintseva, A., Quan, T. P., Tilley, R., Scarborough, M., Crook, D. W., Peto, T. E., Walker, A. S., Llewelyn, M. J., & Wilson, D. J. (2021). Antimicrobial resistance determinants are associated with . Microbial genomics, 7(11), . https://doi.org/10.1099/mgen.0.000700
Young, Bernadette C, et al. "Antimicrobial resistance determinants are associated with ." Microbial genomics vol. 7,11 (2021). doi: https://doi.org/10.1099/mgen.0.000700
Young BC, Wu CH, Charlesworth J, Earle S, Price JR, Gordon NC, Cole K, Dunn L, Liu E, Oakley S, Godwin H, Fung R, Miller R, Knox K, Votintseva A, Quan TP, Tilley R, Scarborough M, Crook DW, Peto TE, Walker AS, Llewelyn MJ, Wilson DJ. Antimicrobial resistance determinants are associated with . Microb Genom. 2021 Nov;7(11). doi: 10.1099/mgen.0.000700. PMID: 34812717; PMCID: PMC8743558.
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A systematic review of behavioural smoking cessation interventions for people with severe mental ill health-what works?.

Addiction (Abingdon, England)

Spanakis P, Peckham E, Young B, Heron P, Bailey D, Gilbody S.
PMID: 34697848
Addiction. 2021 Oct 25; doi: 10.1111/add.15724. Epub 2021 Oct 25.

BACKGROUND AND AIMS: People with severe mental ill health smoke more and suffer greater smoking-related morbidity and mortality. Little is known about the effectiveness of behavioural interventions for smoking cessation in this group. This review evaluated randomized controlled trial...

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Spanakis P, Peckham E, Young B, et al. A systematic review of behavioural smoking cessation interventions for people with severe mental ill health-what works?. Addiction. 2021;doi: 10.1111/add.15724.
Spanakis, P., Peckham, E., Young, B., Heron, P., Bailey, D., & Gilbody, S. (2021). A systematic review of behavioural smoking cessation interventions for people with severe mental ill health-what works?. Addiction (Abingdon, England), . https://doi.org/10.1111/add.15724
Spanakis, Panagiotis, et al. "A systematic review of behavioural smoking cessation interventions for people with severe mental ill health-what works?." Addiction (Abingdon, England) vol. (2021). doi: https://doi.org/10.1111/add.15724
Spanakis P, Peckham E, Young B, Heron P, Bailey D, Gilbody S. A systematic review of behavioural smoking cessation interventions for people with severe mental ill health-what works?. Addiction. 2021 Oct 25; doi: 10.1111/add.15724. Epub 2021 Oct 25. PMID: 34697848.
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The morphogenesis of mouse vallate gustatory epithelium and taste buds requires BDNF-dependent taste neurons.

Brain research. Developmental brain research

Oakley B, Brandemihl A, Cooper D, Lau D, Lawton A, Zhang C.
PMID: 9473602
Brain Res Dev Brain Res. 1998 Jan 14;105(1):85-96.

The developmental absence of brain-derived neurotrophic factor (BDNF) in null mutant mice caused three interrelated defects in the vallate gustatory papilla: sparse innervation, a reduction in the area of the gustatory epithelium, and fewer taste buds. On postnatal day...

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Oakley B, Brandemihl A, Cooper D, et al. The morphogenesis of mouse vallate gustatory epithelium and taste buds requires BDNF-dependent taste neurons. Brain Res Dev Brain Res. 1998;105(1):85-96
Oakley, B., Brandemihl, A., Cooper, D., Lau, D., Lawton, A., & Zhang, C. (1998). The morphogenesis of mouse vallate gustatory epithelium and taste buds requires BDNF-dependent taste neurons. Brain research. Developmental brain research, 105(1), 85-96.
Oakley, et al. "The morphogenesis of mouse vallate gustatory epithelium and taste buds requires BDNF-dependent taste neurons." Brain research. Developmental brain research vol. 105,1 (1998): 85-96.
Oakley B, Brandemihl A, Cooper D, Lau D, Lawton A, Zhang C. The morphogenesis of mouse vallate gustatory epithelium and taste buds requires BDNF-dependent taste neurons. Brain Res Dev Brain Res. 1998 Jan 14;105(1):85-96. PMID: 9473602.
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Muscle transcriptional networks linked to resistance exercise training hypertrophic response heterogeneity.

Physiological genomics

Lavin KM, Bell MB, McAdam JS, Peck BD, Walton RG, Windham ST, Tuggle SC, Long DE, Kern PA, Peterson CA, Bamman MM.
PMID: 33870722
Physiol Genomics. 2021 May 01;53(5):206-221. doi: 10.1152/physiolgenomics.00154.2020. Epub 2021 Apr 19.

The skeletal muscle hypertrophic response to resistance exercise training (RT) is highly variable across individuals. The molecular underpinnings of this heterogeneity are unclear. This study investigated transcriptional networks linked to RT-induced muscle hypertrophy, classified as

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Lavin KM, Bell MB, McAdam JS, et al. Muscle transcriptional networks linked to resistance exercise training hypertrophic response heterogeneity. Physiol Genomics. 2021;53(5):206-221doi: 10.1152/physiolgenomics.00154.2020.
Lavin, K. M., Bell, M. B., McAdam, J. S., Peck, B. D., Walton, R. G., Windham, S. T., Tuggle, S. C., Long, D. E., Kern, P. A., Peterson, C. A., & Bamman, M. M. (2021). Muscle transcriptional networks linked to resistance exercise training hypertrophic response heterogeneity. Physiological genomics, 53(5), 206-221. https://doi.org/10.1152/physiolgenomics.00154.2020
Lavin, Kaleen M, et al. "Muscle transcriptional networks linked to resistance exercise training hypertrophic response heterogeneity." Physiological genomics vol. 53,5 (2021): 206-221. doi: https://doi.org/10.1152/physiolgenomics.00154.2020
Lavin KM, Bell MB, McAdam JS, Peck BD, Walton RG, Windham ST, Tuggle SC, Long DE, Kern PA, Peterson CA, Bamman MM. Muscle transcriptional networks linked to resistance exercise training hypertrophic response heterogeneity. Physiol Genomics. 2021 May 01;53(5):206-221. doi: 10.1152/physiolgenomics.00154.2020. Epub 2021 Apr 19. PMID: 33870722; PMCID: PMC8424535.
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SARS-CoV-2 RNA detected in blood products from patients with COVID-19 is not associated with infectious virus.

Wellcome open research

Andersson MI, Arancibia-Carcamo CV, Auckland K, Baillie JK, Barnes E, Beneke T, Bibi S, Brooks T, Carroll M, Crook D, Dingle K, Dold C, Downs LO, Dunn L, Eyre DW, Gilbert Jaramillo J, Harvala H, Hoosdally S, Ijaz S, James T, James W, Jeffery K, Justice A, Klenerman P, Knight JC, Knight M, Liu X, Lumley SF, Matthews PC, McNaughton AL, Mentzer AJ, Mongkolsapaya J, Oakley S, Oliveira MS, Peto T, Ploeg RJ, Ratcliff J, Robbins MJ, Roberts DJ, Rudkin J, Russell RA, Screaton G, Semple MG, Skelly D, Simmonds P, Stoesser N, Turtle L, Wareing S, Zambon M.
PMID: 33283055
Wellcome Open Res. 2020 Jul 29;5:181. doi: 10.12688/wellcomeopenres.16002.1. eCollection 2020.

No abstract available.

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Andersson MI, Arancibia-Carcamo CV, Auckland K, et al. SARS-CoV-2 RNA detected in blood products from patients with COVID-19 is not associated with infectious virus. Wellcome Open Res. 2020;5:181doi: 10.12688/wellcomeopenres.16002.1.
Andersson, M. I., Arancibia-Carcamo, C. V., Auckland, K., Baillie, J. K., Barnes, E., Beneke, T., Bibi, S., Brooks, T., Carroll, M., Crook, D., Dingle, K., Dold, C., Downs, L. O., Dunn, L., Eyre, D. W., Gilbert Jaramillo, J., Harvala, H., Hoosdally, S., Ijaz, S., James, T., James, W., Jeffery, K., Justice, A., Klenerman, P., Knight, J. C., Knight, M., Liu, X., Lumley, S. F., Matthews, P. C., McNaughton, A. L., Mentzer, A. J., Mongkolsapaya, J., Oakley, S., Oliveira, M. S., Peto, T., Ploeg, R. J., Ratcliff, J., Robbins, M. J., Roberts, D. J., Rudkin, J., Russell, R. A., Screaton, G., Semple, M. G., Skelly, D., Simmonds, P., Stoesser, N., Turtle, L., Wareing, S., & Zambon, M. (2020). SARS-CoV-2 RNA detected in blood products from patients with COVID-19 is not associated with infectious virus. Wellcome open research, 5181. https://doi.org/10.12688/wellcomeopenres.16002.1
Andersson, Monique I, et al. "SARS-CoV-2 RNA detected in blood products from patients with COVID-19 is not associated with infectious virus." Wellcome open research vol. 5 (2020): 181. doi: https://doi.org/10.12688/wellcomeopenres.16002.1
Andersson MI, Arancibia-Carcamo CV, Auckland K, Baillie JK, Barnes E, Beneke T, Bibi S, Brooks T, Carroll M, Crook D, Dingle K, Dold C, Downs LO, Dunn L, Eyre DW, Gilbert Jaramillo J, Harvala H, Hoosdally S, Ijaz S, James T, James W, Jeffery K, Justice A, Klenerman P, Knight JC, Knight M, Liu X, Lumley SF, Matthews PC, McNaughton AL, Mentzer AJ, Mongkolsapaya J, Oakley S, Oliveira MS, Peto T, Ploeg RJ, Ratcliff J, Robbins MJ, Roberts DJ, Rudkin J, Russell RA, Screaton G, Semple MG, Skelly D, Simmonds P, Stoesser N, Turtle L, Wareing S, Zambon M. SARS-CoV-2 RNA detected in blood products from patients with COVID-19 is not associated with infectious virus. Wellcome Open Res. 2020 Jul 29;5:181. doi: 10.12688/wellcomeopenres.16002.1. eCollection 2020. PMID: 33283055; PMCID: PMC7689603.
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