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Strategies for efficient numerical implementation of hybrid multi-scale agent-based models to describe biological systems.

Cellular and molecular bioengineering

Cilfone NA, Kirschner DE, Linderman JJ.
PMID: 26366228
Cell Mol Bioeng. 2015 Mar;8(1):119-136. doi: 10.1007/s12195-014-0363-6.

Biologically related processes operate across multiple spatiotemporal scales. For computational modeling methodologies to mimic this biological complexity, individual scale models must be linked in ways that allow for dynamic exchange of information across scales. A powerful methodology is to...

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Cilfone NA, Kirschner DE, Linderman JJ. Strategies for efficient numerical implementation of hybrid multi-scale agent-based models to describe biological systems. Cell Mol Bioeng. 2015;8(1):119-136doi: 10.1007/s12195-014-0363-6.
Cilfone, N. A., Kirschner, D. E., & Linderman, J. J. (2015). Strategies for efficient numerical implementation of hybrid multi-scale agent-based models to describe biological systems. Cellular and molecular bioengineering, 8(1), 119-136. https://doi.org/10.1007/s12195-014-0363-6
Cilfone, Nicholas A, et al. "Strategies for efficient numerical implementation of hybrid multi-scale agent-based models to describe biological systems." Cellular and molecular bioengineering vol. 8,1 (2015): 119-136. doi: https://doi.org/10.1007/s12195-014-0363-6
Cilfone NA, Kirschner DE, Linderman JJ. Strategies for efficient numerical implementation of hybrid multi-scale agent-based models to describe biological systems. Cell Mol Bioeng. 2015 Mar;8(1):119-136. doi: 10.1007/s12195-014-0363-6. PMID: 26366228; PMCID: PMC4564133.
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The 2015 Young Innovators of Cellular and Molecular Bioengineering.

Cellular and molecular bioengineering

Reinhart-King CA, Schmidt CE, Peppas NA.
PMID: 26366229
Cell Mol Bioeng. 2015 Sep;8(3):305-306. doi: 10.1007/s12195-015-0414-7.

No abstract available.

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Reinhart-King CA, Schmidt CE, Peppas NA. The 2015 Young Innovators of Cellular and Molecular Bioengineering. Cell Mol Bioeng. 2015;8(3):305-306doi: 10.1007/s12195-015-0414-7.
Reinhart-King, C. A., Schmidt, C. E., & Peppas, N. A. (2015). The 2015 Young Innovators of Cellular and Molecular Bioengineering. Cellular and molecular bioengineering, 8(3), 305-306. https://doi.org/10.1007/s12195-015-0414-7
Reinhart-King, Cynthia A, et al. "The 2015 Young Innovators of Cellular and Molecular Bioengineering." Cellular and molecular bioengineering vol. 8,3 (2015): 305-306. doi: https://doi.org/10.1007/s12195-015-0414-7
Reinhart-King CA, Schmidt CE, Peppas NA. The 2015 Young Innovators of Cellular and Molecular Bioengineering. Cell Mol Bioeng. 2015 Sep;8(3):305-306. doi: 10.1007/s12195-015-0414-7. PMID: 26366229; PMCID: PMC4564066.
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Cucurbit[8]uril as nanocontainer in a polyelectrolyte multilayer film: a quantitative and kinetic study of guest uptake.

Langmuir : the ACS journal of surfaces and colloids

Nicolas H, Yuan B, Zhang J, Zhang X, Schönhoff M.
PMID: 26372778
Langmuir. 2015 Oct 06;31(39):10734-42. doi: 10.1021/acs.langmuir.5b02806.

The host-guest chemistry of cucurbit[8]uril (CB[8]) and the layer-by-layer self-assembly technique are combined to obtain a molecular imprinted polyelectrolyte multilayer film for the recognition and binding of a guest molecule. Cucurbit[8]uril as a ready-made binding site is first associated...

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Nicolas H, Yuan B, Zhang J, et al. Cucurbit[8]uril as nanocontainer in a polyelectrolyte multilayer film: a quantitative and kinetic study of guest uptake. Langmuir. 2015;31(39):10734-42doi: 10.1021/acs.langmuir.5b02806.
Nicolas, H., Yuan, B., Zhang, J., Zhang, X., & Schönhoff, M. (2015). Cucurbit[8]uril as nanocontainer in a polyelectrolyte multilayer film: a quantitative and kinetic study of guest uptake. Langmuir : the ACS journal of surfaces and colloids, 31(39), 10734-42. https://doi.org/10.1021/acs.langmuir.5b02806
Nicolas, Henning, et al. "Cucurbit[8]uril as nanocontainer in a polyelectrolyte multilayer film: a quantitative and kinetic study of guest uptake." Langmuir : the ACS journal of surfaces and colloids vol. 31,39 (2015): 10734-42. doi: https://doi.org/10.1021/acs.langmuir.5b02806
Nicolas H, Yuan B, Zhang J, Zhang X, Schönhoff M. Cucurbit[8]uril as nanocontainer in a polyelectrolyte multilayer film: a quantitative and kinetic study of guest uptake. Langmuir. 2015 Oct 06;31(39):10734-42. doi: 10.1021/acs.langmuir.5b02806. PMID: 26372778.
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High Fat High Sugar Diet Reduces Voluntary Wheel Running in Mice Independent of Sex Hormone Involvement.

Frontiers in physiology

Vellers HL, Letsinger AC, Walker NR, Granados JZ, Lightfoot JT.
PMID: 28890701
Front Physiol. 2017 Aug 25;8:628. doi: 10.3389/fphys.2017.00628. eCollection 2017.

No abstract available.

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Vellers HL, Letsinger AC, Walker NR, et al. High Fat High Sugar Diet Reduces Voluntary Wheel Running in Mice Independent of Sex Hormone Involvement. Front Physiol. 2017;8:628doi: 10.3389/fphys.2017.00628.
Vellers, H. L., Letsinger, A. C., Walker, N. R., Granados, J. Z., & Lightfoot, J. T. (2017). High Fat High Sugar Diet Reduces Voluntary Wheel Running in Mice Independent of Sex Hormone Involvement. Frontiers in physiology, 8628. https://doi.org/10.3389/fphys.2017.00628
Vellers, Heather L, et al. "High Fat High Sugar Diet Reduces Voluntary Wheel Running in Mice Independent of Sex Hormone Involvement." Frontiers in physiology vol. 8 (2017): 628. doi: https://doi.org/10.3389/fphys.2017.00628
Vellers HL, Letsinger AC, Walker NR, Granados JZ, Lightfoot JT. High Fat High Sugar Diet Reduces Voluntary Wheel Running in Mice Independent of Sex Hormone Involvement. Front Physiol. 2017 Aug 25;8:628. doi: 10.3389/fphys.2017.00628. eCollection 2017. PMID: 28890701; PMCID: PMC5575154.
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Project Stronger Together: Protocol to Test a Dyadic Intervention to Improve Engagement in HIV Care Among Sero-Discordant Male Couples in Three US Cities.

JMIR research protocols

Stephenson R, Suarez NA, Garofalo R, Hidalgo MA, Hoehnle S, Thai J, Mimiaga MJ, Brown E, Bratcher A, Wimbly T, Sullivan P.
PMID: 28860107
JMIR Res Protoc. 2017 Aug 31;6(8):e170. doi: 10.2196/resprot.7884.

BACKGROUND: An estimated one- to-two-thirds of new human immunodeficiency virus (HIV) infections among US men who have sex with men (MSM) occur within the context of primary partnerships. Despite this fact, there remains a lack of prevention interventions that...

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Stephenson R, Suarez NA, Garofalo R, et al. Project Stronger Together: Protocol to Test a Dyadic Intervention to Improve Engagement in HIV Care Among Sero-Discordant Male Couples in Three US Cities. JMIR Res Protoc. 2017;6(8):e170doi: 10.2196/resprot.7884.
Stephenson, R., Suarez, N. A., Garofalo, R., Hidalgo, M. A., Hoehnle, S., Thai, J., Mimiaga, M. J., Brown, E., Bratcher, A., Wimbly, T., & Sullivan, P. (2017). Project Stronger Together: Protocol to Test a Dyadic Intervention to Improve Engagement in HIV Care Among Sero-Discordant Male Couples in Three US Cities. JMIR research protocols, 6(8), e170. https://doi.org/10.2196/resprot.7884
Stephenson, Rob, et al. "Project Stronger Together: Protocol to Test a Dyadic Intervention to Improve Engagement in HIV Care Among Sero-Discordant Male Couples in Three US Cities." JMIR research protocols vol. 6,8 (2017): e170. doi: https://doi.org/10.2196/resprot.7884
Stephenson R, Suarez NA, Garofalo R, Hidalgo MA, Hoehnle S, Thai J, Mimiaga MJ, Brown E, Bratcher A, Wimbly T, Sullivan P. Project Stronger Together: Protocol to Test a Dyadic Intervention to Improve Engagement in HIV Care Among Sero-Discordant Male Couples in Three US Cities. JMIR Res Protoc. 2017 Aug 31;6(8):e170. doi: 10.2196/resprot.7884. PMID: 28860107; PMCID: PMC5599729.
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Chiral Inorganic Nanostructures.

Chemical reviews

Ma W, Xu L, de Moura AF, Wu X, Kuang H, Xu C, Kotov NA.
PMID: 28426196
Chem Rev. 2017 Jun 28;117(12):8041-8093. doi: 10.1021/acs.chemrev.6b00755. Epub 2017 Apr 20.

The field of chiral inorganic nanostructures is rapidly expanding. It started from the observation of strong circular dichroism during the synthesis of individual nanoparticles (NPs) and their assemblies and expanded to sophisticated synthetic protocols involving nanostructures from metals, semiconductors,...

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Ma W, Xu L, de Moura AF, et al. Chiral Inorganic Nanostructures. Chem Rev. 2017;117(12):8041-8093doi: 10.1021/acs.chemrev.6b00755.
Ma, W., Xu, L., de Moura, A. F., Wu, X., Kuang, H., Xu, C., & Kotov, N. A. (2017). Chiral Inorganic Nanostructures. Chemical reviews, 117(12), 8041-8093. https://doi.org/10.1021/acs.chemrev.6b00755
Ma, Wei, et al. "Chiral Inorganic Nanostructures." Chemical reviews vol. 117,12 (2017): 8041-8093. doi: https://doi.org/10.1021/acs.chemrev.6b00755
Ma W, Xu L, de Moura AF, Wu X, Kuang H, Xu C, Kotov NA. Chiral Inorganic Nanostructures. Chem Rev. 2017 Jun 28;117(12):8041-8093. doi: 10.1021/acs.chemrev.6b00755. Epub 2017 Apr 20. PMID: 28426196.
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Nitric oxide-releasing porous silicon nanoparticles.

Nanoscale research letters

Kafshgari MH, Cavallaro A, Delalat B, Harding FJ, McInnes SJ, Mäkilä E, Salonen J, Vasilev K, Voelcker NH.
PMID: 25114633
Nanoscale Res Lett. 2014 Jul 04;9(1):333. doi: 10.1186/1556-276X-9-333. eCollection 2014.

In this study, the ability of porous silicon nanoparticles (PSi NPs) to entrap and deliver nitric oxide (NO) as an effective antibacterial agent is tested against different Gram-positive and Gram-negative bacteria. NO was entrapped inside PSi NPs functionalized by...

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Kafshgari MH, Cavallaro A, Delalat B, et al. Nitric oxide-releasing porous silicon nanoparticles. Nanoscale Res Lett. 2014;9(1):333doi: 10.1186/1556-276X-9-333.
Kafshgari, M. H., Cavallaro, A., Delalat, B., Harding, F. J., McInnes, S. J., Mäkilä, E., Salonen, J., Vasilev, K., & Voelcker, N. H. (2014). Nitric oxide-releasing porous silicon nanoparticles. Nanoscale research letters, 9(1), 333. https://doi.org/10.1186/1556-276X-9-333
Kafshgari, Morteza Hasanzadeh, et al. "Nitric oxide-releasing porous silicon nanoparticles." Nanoscale research letters vol. 9,1 (2014): 333. doi: https://doi.org/10.1186/1556-276X-9-333
Kafshgari MH, Cavallaro A, Delalat B, Harding FJ, McInnes SJ, Mäkilä E, Salonen J, Vasilev K, Voelcker NH. Nitric oxide-releasing porous silicon nanoparticles. Nanoscale Res Lett. 2014 Jul 04;9(1):333. doi: 10.1186/1556-276X-9-333. eCollection 2014. PMID: 25114633; PMCID: PMC4109794.
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High-resolution photoelectron spectroscopy with angular selectivity - a tool to probe valence-Rydberg states and couplings in HCl(+).

The journal of physical chemistry. A

Patanen M, Nicolas C, Linguerri R, Simões G, Travnikova O, Liu XJ, Hochlaf M, Bozek JD, Miron C.
PMID: 25007894
J Phys Chem A. 2014 Jul 10;118(27):4975-81. doi: 10.1021/jp504505e. Epub 2014 Jun 30.

Due to strong electron correlation effects and electron coupling with nuclear motion, the molecular inner-valence photoionization is still a challenge in electron spectroscopy, resulting in several interesting phenomena such as drastic changes of angular dependencies, spin-orbit induced predissociation, and...

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Patanen M, Nicolas C, Linguerri R, et al. High-resolution photoelectron spectroscopy with angular selectivity - a tool to probe valence-Rydberg states and couplings in HCl(+). J Phys Chem A. 2014;118(27):4975-81doi: 10.1021/jp504505e.
Patanen, M., Nicolas, C., Linguerri, R., Simões, G., Travnikova, O., Liu, X. J., Hochlaf, M., Bozek, J. D., & Miron, C. (2014). High-resolution photoelectron spectroscopy with angular selectivity - a tool to probe valence-Rydberg states and couplings in HCl(+). The journal of physical chemistry. A, 118(27), 4975-81. https://doi.org/10.1021/jp504505e
Patanen, M, et al. "High-resolution photoelectron spectroscopy with angular selectivity - a tool to probe valence-Rydberg states and couplings in HCl(+)." The journal of physical chemistry. A vol. 118,27 (2014): 4975-81. doi: https://doi.org/10.1021/jp504505e
Patanen M, Nicolas C, Linguerri R, Simões G, Travnikova O, Liu XJ, Hochlaf M, Bozek JD, Miron C. High-resolution photoelectron spectroscopy with angular selectivity - a tool to probe valence-Rydberg states and couplings in HCl(+). J Phys Chem A. 2014 Jul 10;118(27):4975-81. doi: 10.1021/jp504505e. Epub 2014 Jun 30. PMID: 25007894.
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Pseudo-winging of the scapula caused by scapular osteochondroma: review of literature and case report.

Hand (New York, N.Y.)

Flugstad NA, Sanger JR, Hackbarth DA.
PMID: 26034460
Hand (N Y). 2015 Jun;10(2):353-6. doi: 10.1007/s11552-014-9659-1.

A 20-year-old male was evaluated for winging of the scapula and an enlarging axillary mass of 4 months' duration. Imaging demonstrated a multiloculated cystic lesion that extended into the axilla and superiorly displaced the brachial plexus and axillary vessels...

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Flugstad NA, Sanger JR, Hackbarth DA. Pseudo-winging of the scapula caused by scapular osteochondroma: review of literature and case report. Hand (N Y). 2015;10(2):353-6doi: 10.1007/s11552-014-9659-1.
Flugstad, N. A., Sanger, J. R., & Hackbarth, D. A. (2015). Pseudo-winging of the scapula caused by scapular osteochondroma: review of literature and case report. Hand (New York, N.Y.), 10(2), 353-6. https://doi.org/10.1007/s11552-014-9659-1
Flugstad, Nicholas A, et al. "Pseudo-winging of the scapula caused by scapular osteochondroma: review of literature and case report." Hand (New York, N.Y.) vol. 10,2 (2015): 353-6. doi: https://doi.org/10.1007/s11552-014-9659-1
Flugstad NA, Sanger JR, Hackbarth DA. Pseudo-winging of the scapula caused by scapular osteochondroma: review of literature and case report. Hand (N Y). 2015 Jun;10(2):353-6. doi: 10.1007/s11552-014-9659-1. PMID: 26034460; PMCID: PMC4447661.
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Probing charge transfer in a novel class of luminescent perovskite-based heterostructures composed of quantum dots bound to RE-activated CaTiO3 phosphors.

Nanoscale

Lewis CS, Liu H, Han J, Wang L, Yue S, Brennan NA, Wong SS.
PMID: 26725486
Nanoscale. 2016 Jan 28;8(4):2129-42. doi: 10.1039/c5nr06697b.

We report on the synthesis and structural characterization of novel semiconducting heterostructures composed of cadmium selenide (CdSe) quantum dots (QDs) attached onto the surfaces of novel high-surface area, porous rare-earth-ion doped alkaline earth titanate micron-scale spherical motifs, i.e. both...

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Lewis CS, Liu H, Han J, et al. Probing charge transfer in a novel class of luminescent perovskite-based heterostructures composed of quantum dots bound to RE-activated CaTiO3 phosphors. Nanoscale. 2016;8(4):2129-42doi: 10.1039/c5nr06697b.
Lewis, C. S., Liu, H., Han, J., Wang, L., Yue, S., Brennan, N. A., & Wong, S. S. (2016). Probing charge transfer in a novel class of luminescent perovskite-based heterostructures composed of quantum dots bound to RE-activated CaTiO3 phosphors. Nanoscale, 8(4), 2129-42. https://doi.org/10.1039/c5nr06697b
Lewis, Crystal S, et al. "Probing charge transfer in a novel class of luminescent perovskite-based heterostructures composed of quantum dots bound to RE-activated CaTiO3 phosphors." Nanoscale vol. 8,4 (2016): 2129-42. doi: https://doi.org/10.1039/c5nr06697b
Lewis CS, Liu H, Han J, Wang L, Yue S, Brennan NA, Wong SS. Probing charge transfer in a novel class of luminescent perovskite-based heterostructures composed of quantum dots bound to RE-activated CaTiO3 phosphors. Nanoscale. 2016 Jan 28;8(4):2129-42. doi: 10.1039/c5nr06697b. PMID: 26725486.
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Hybrid Group IV Nanophotonic Structures Incorporating Diamond Silicon-Vacancy Color Centers.

Nano letters

Zhang JL, Ishiwata H, Babinec TM, Radulaski M, Müller K, Lagoudakis KG, Dory C, Dahl J, Edgington R, Soulière V, Ferro G, Fokin AA, Schreiner PR, Shen ZX, Melosh NA, Vučković J.
PMID: 26695059
Nano Lett. 2016 Jan 13;16(1):212-7. doi: 10.1021/acs.nanolett.5b03515. Epub 2015 Dec 24.

We demonstrate a new approach for engineering group IV semiconductor-based quantum photonic structures containing negatively charged silicon-vacancy (SiV(-)) color centers in diamond as quantum emitters. Hybrid diamond-SiC structures are realized by combining the growth of nano- and microdiamonds on...

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Zhang JL, Ishiwata H, Babinec TM, et al. Hybrid Group IV Nanophotonic Structures Incorporating Diamond Silicon-Vacancy Color Centers. Nano Lett. 2015;16(1):212-7doi: 10.1021/acs.nanolett.5b03515.
Zhang, J. L., Ishiwata, H., Babinec, T. M., Radulaski, M., Müller, K., Lagoudakis, K. G., Dory, C., Dahl, J., Edgington, R., Soulière, V., Ferro, G., Fokin, A. A., Schreiner, P. R., Shen, Z. X., Melosh, N. A., & Vučković, J. (2016). Hybrid Group IV Nanophotonic Structures Incorporating Diamond Silicon-Vacancy Color Centers. Nano letters, 16(1), 212-7. https://doi.org/10.1021/acs.nanolett.5b03515
Zhang, Jingyuan Linda, et al. "Hybrid Group IV Nanophotonic Structures Incorporating Diamond Silicon-Vacancy Color Centers." Nano letters vol. 16,1 (2016): 212-7. doi: https://doi.org/10.1021/acs.nanolett.5b03515
Zhang JL, Ishiwata H, Babinec TM, Radulaski M, Müller K, Lagoudakis KG, Dory C, Dahl J, Edgington R, Soulière V, Ferro G, Fokin AA, Schreiner PR, Shen ZX, Melosh NA, Vučković J. Hybrid Group IV Nanophotonic Structures Incorporating Diamond Silicon-Vacancy Color Centers. Nano Lett. 2016 Jan 13;16(1):212-7. doi: 10.1021/acs.nanolett.5b03515. Epub 2015 Dec 24. PMID: 26695059.
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Direct Observation of Entropy-Driven Electron-Hole Pair Separation at an Organic Semiconductor Interface.

Physical review letters

Monahan NR, Williams KW, Kumar B, Nuckolls C, Zhu XY.
PMID: 26196998
Phys Rev Lett. 2015 Jun 19;114(24):247003. doi: 10.1103/PhysRevLett.114.247003. Epub 2015 Jun 16.

How an electron-hole pair escapes the Coulomb potential at a donor-acceptor interface has been a key issue in organic photovoltaic research. Recent evidence suggests that long-distance charge separation can occur on ultrafast time scales, yet the underlying mechanism remains...

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Monahan NR, Williams KW, Kumar B, et al. Direct Observation of Entropy-Driven Electron-Hole Pair Separation at an Organic Semiconductor Interface. Phys Rev Lett. 2015;114(24):247003doi: 10.1103/PhysRevLett.114.247003.
Monahan, N. R., Williams, K. W., Kumar, B., Nuckolls, C., & Zhu, X. Y. (2015). Direct Observation of Entropy-Driven Electron-Hole Pair Separation at an Organic Semiconductor Interface. Physical review letters, 114(24), 247003. https://doi.org/10.1103/PhysRevLett.114.247003
Monahan, Nicholas R, et al. "Direct Observation of Entropy-Driven Electron-Hole Pair Separation at an Organic Semiconductor Interface." Physical review letters vol. 114,24 (2015): 247003. doi: https://doi.org/10.1103/PhysRevLett.114.247003
Monahan NR, Williams KW, Kumar B, Nuckolls C, Zhu XY. Direct Observation of Entropy-Driven Electron-Hole Pair Separation at an Organic Semiconductor Interface. Phys Rev Lett. 2015 Jun 19;114(24):247003. doi: 10.1103/PhysRevLett.114.247003. Epub 2015 Jun 16. PMID: 26196998.
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Showing 13 to 24 of 5914 entries