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Predictors of urinary polycyclic aromatic hydrocarbon metabolites in girls from the San Francisco Bay Area.

Environmental research

John EM, Koo J, Ingles SA, Keegan TH, Nguyen JT, Thomsen C, Terry MB, Santella RM, Nguyen K, Yan B.
PMID: 34896321
Environ Res. 2021 Dec 10;205:112534. doi: 10.1016/j.envres.2021.112534. Epub 2021 Dec 10.

BACKGROUND: Polycyclic aromatic hydrocarbon (PAH) exposures from tobacco smoke, automobile exhaust, grilled or smoked meat and other sources are widespread and are a public health concern, as many are classified as probable carcinogens and suspected endocrine-disrupting chemicals. PAH exposures...

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John EM, Koo J, Ingles SA, et al. Predictors of urinary polycyclic aromatic hydrocarbon metabolites in girls from the San Francisco Bay Area. Environ Res. 2021;205:112534doi: 10.1016/j.envres.2021.112534.
John, E. M., Koo, J., Ingles, S. A., Keegan, T. H., Nguyen, J. T., Thomsen, C., Terry, M. B., Santella, R. M., Nguyen, K., & Yan, B. (2021). Predictors of urinary polycyclic aromatic hydrocarbon metabolites in girls from the San Francisco Bay Area. Environmental research, 205112534. https://doi.org/10.1016/j.envres.2021.112534
John, Esther M, et al. "Predictors of urinary polycyclic aromatic hydrocarbon metabolites in girls from the San Francisco Bay Area." Environmental research vol. 205 (2021): 112534. doi: https://doi.org/10.1016/j.envres.2021.112534
John EM, Koo J, Ingles SA, Keegan TH, Nguyen JT, Thomsen C, Terry MB, Santella RM, Nguyen K, Yan B. Predictors of urinary polycyclic aromatic hydrocarbon metabolites in girls from the San Francisco Bay Area. Environ Res. 2021 Dec 10;205:112534. doi: 10.1016/j.envres.2021.112534. Epub 2021 Dec 10. PMID: 34896321.
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Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus.

mSystems

Karthikeyan S, Nguyen A, McDonald D, Zong Y, Ronquillo N, Ren J, Zou J, Farmer S, Humphrey G, Henderson D, Javidi T, Messer K, Anderson C, Schooley R, Martin NK, Knight R.
PMID: 34374562
mSystems. 2021 Aug 31;6(4):e0079321. doi: 10.1128/mSystems.00793-21. Epub 2021 Aug 10.

Wastewater-based surveillance has gained prominence and come to the forefront as a leading indicator of forecasting COVID-19 (coronavirus disease 2019) infection dynamics owing to its cost-effectiveness and its ability to inform early public health interventions. A university campus could...

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Karthikeyan S, Nguyen A, McDonald D, et al. Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus. mSystems. 2021;6(4):e0079321doi: 10.1128/mSystems.00793-21.
Karthikeyan, S., Nguyen, A., McDonald, D., Zong, Y., Ronquillo, N., Ren, J., Zou, J., Farmer, S., Humphrey, G., Henderson, D., Javidi, T., Messer, K., Anderson, C., Schooley, R., Martin, N. K., & Knight, R. (2021). Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus. mSystems, 6(4), e0079321. https://doi.org/10.1128/mSystems.00793-21
Karthikeyan, Smruthi, et al. "Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus." mSystems vol. 6,4 (2021): e0079321. doi: https://doi.org/10.1128/mSystems.00793-21
Karthikeyan S, Nguyen A, McDonald D, Zong Y, Ronquillo N, Ren J, Zou J, Farmer S, Humphrey G, Henderson D, Javidi T, Messer K, Anderson C, Schooley R, Martin NK, Knight R. Rapid, Large-Scale Wastewater Surveillance and Automated Reporting System Enable Early Detection of Nearly 85% of COVID-19 Cases on a University Campus. mSystems. 2021 Aug 31;6(4):e0079321. doi: 10.1128/mSystems.00793-21. Epub 2021 Aug 10. PMID: 34374562; PMCID: PMC8409724.
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Our Health, Our Action, Our Planet-a Call to Action for Microbiologists To Engage in Climate Research.

mBio

Nguyen N, Casadevall A.
PMID: 34488456
mBio. 2021 Oct 26;12(5):e0250221. doi: 10.1128/mBio.02502-21. Epub 2021 Sep 07.

No abstract available.

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Nguyen N, Casadevall A. Our Health, Our Action, Our Planet-a Call to Action for Microbiologists To Engage in Climate Research. mBio. 2021;12(5):e0250221doi: 10.1128/mBio.02502-21.
Nguyen, N., & Casadevall, A. (2021). Our Health, Our Action, Our Planet-a Call to Action for Microbiologists To Engage in Climate Research. mBio, 12(5), e0250221. https://doi.org/10.1128/mBio.02502-21
Nguyen, Nguyen, and Casadevall, Arturo. "Our Health, Our Action, Our Planet-a Call to Action for Microbiologists To Engage in Climate Research." mBio vol. 12,5 (2021): e0250221. doi: https://doi.org/10.1128/mBio.02502-21
Nguyen N, Casadevall A. Our Health, Our Action, Our Planet-a Call to Action for Microbiologists To Engage in Climate Research. mBio. 2021 Oct 26;12(5):e0250221. doi: 10.1128/mBio.02502-21. Epub 2021 Sep 07. PMID: 34488456; PMCID: PMC8546646.
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Implementation and initial analysis of Cardiff Model data collection procedures in a level I trauma adult emergency department.

BMJ open

Nguyen P, Kohlbeck SA, Levas M, Hernandez-Meier J.
PMID: 34992109
BMJ Open. 2022 Jan 06;12(1):e052344. doi: 10.1136/bmjopen-2021-052344.

OBJECTIVES: Our understanding of community violence is limited by incomplete information, which can potentially be resolved by collecting violence-related injury information through healthcare systems in tandem with prior data streams. This study assessed the feasibility of implementing Cardiff Model...

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Nguyen P, Kohlbeck SA, Levas M, et al. Implementation and initial analysis of Cardiff Model data collection procedures in a level I trauma adult emergency department. BMJ Open. 2022;12(1):e052344doi: 10.1136/bmjopen-2021-052344.
Nguyen, P., Kohlbeck, S. A., Levas, M., & Hernandez-Meier, J. (2022). Implementation and initial analysis of Cardiff Model data collection procedures in a level I trauma adult emergency department. BMJ open, 12(1), e052344. https://doi.org/10.1136/bmjopen-2021-052344
Nguyen, Peter, et al. "Implementation and initial analysis of Cardiff Model data collection procedures in a level I trauma adult emergency department." BMJ open vol. 12,1 (2022): e052344. doi: https://doi.org/10.1136/bmjopen-2021-052344
Nguyen P, Kohlbeck SA, Levas M, Hernandez-Meier J. Implementation and initial analysis of Cardiff Model data collection procedures in a level I trauma adult emergency department. BMJ Open. 2022 Jan 06;12(1):e052344. doi: 10.1136/bmjopen-2021-052344. PMID: 34992109.
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Fungal infections in lung transplantation.

Journal of thoracic disease

Samanta P, Clancy CJ, Nguyen MH.
PMID: 34992845
J Thorac Dis. 2021 Nov;13(11):6695-6707. doi: 10.21037/jtd-2021-26.

Lung transplant is a potential life-saving procedure for chronic lung diseases. Lung transplant recipients (LTRs) are at the greatest risk for invasive fungal infections (IFIs) among solid organ transplant (SOT) recipients because the allograft is directly exposed to fungi...

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Samanta P, Clancy CJ, Nguyen MH. Fungal infections in lung transplantation. J Thorac Dis. 2021;13(11):6695-6707doi: 10.21037/jtd-2021-26.
Samanta, P., Clancy, C. J., & Nguyen, M. H. (2021). Fungal infections in lung transplantation. Journal of thoracic disease, 13(11), 6695-6707. https://doi.org/10.21037/jtd-2021-26
Samanta, Palash, et al. "Fungal infections in lung transplantation." Journal of thoracic disease vol. 13,11 (2021): 6695-6707. doi: https://doi.org/10.21037/jtd-2021-26
Samanta P, Clancy CJ, Nguyen MH. Fungal infections in lung transplantation. J Thorac Dis. 2021 Nov;13(11):6695-6707. doi: 10.21037/jtd-2021-26. PMID: 34992845; PMCID: PMC8662481.
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COVID-19 vaccine perceptions and uptake in a national prospective cohort of essential workers.

Vaccine

Lutrick K, Groom H, Fowlkes AL, Groover KD, Gaglani M, Rivers P, Naleway AL, Nguyen K, Herring M, Dunnigan K, Phillips A, Parker J, Mayo Lamberte J, Prather K, Thiese MS, Baccam Z, Tyner H, Yoon S.
PMID: 34906392
Vaccine. 2022 Jan 24;40(3):494-502. doi: 10.1016/j.vaccine.2021.11.094. Epub 2021 Dec 11.

INTRODUCTION: In a multi-center prospective cohort of essential workers, we assessed knowledge, attitudes, and practices (KAP) by vaccine intention, prior SARS-CoV-2 positivity, and occupation, and their impact on vaccine uptake over time.METHODS: Initiated in July 2020, the HEROES-RECOVER cohort...

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Lutrick K, Groom H, Fowlkes AL, et al. COVID-19 vaccine perceptions and uptake in a national prospective cohort of essential workers. Vaccine. 2021;40(3):494-502doi: 10.1016/j.vaccine.2021.11.094.
Lutrick, K., Groom, H., Fowlkes, A. L., Groover, K. D., Gaglani, M., Rivers, P., Naleway, A. L., Nguyen, K., Herring, M., Dunnigan, K., Phillips, A., Parker, J., Mayo Lamberte, J., Prather, K., Thiese, M. S., Baccam, Z., Tyner, H., & Yoon, S. (2022). COVID-19 vaccine perceptions and uptake in a national prospective cohort of essential workers. Vaccine, 40(3), 494-502. https://doi.org/10.1016/j.vaccine.2021.11.094
Lutrick, Karen, et al. "COVID-19 vaccine perceptions and uptake in a national prospective cohort of essential workers." Vaccine vol. 40,3 (2022): 494-502. doi: https://doi.org/10.1016/j.vaccine.2021.11.094
Lutrick K, Groom H, Fowlkes AL, Groover KD, Gaglani M, Rivers P, Naleway AL, Nguyen K, Herring M, Dunnigan K, Phillips A, Parker J, Mayo Lamberte J, Prather K, Thiese MS, Baccam Z, Tyner H, Yoon S. COVID-19 vaccine perceptions and uptake in a national prospective cohort of essential workers. Vaccine. 2022 Jan 24;40(3):494-502. doi: 10.1016/j.vaccine.2021.11.094. Epub 2021 Dec 11. PMID: 34906392; PMCID: PMC8665770.
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Effectively Conducting Oncology Clinical Trials During the COVID-19 Pandemic.

Advances in radiation oncology

Yeboa DN, Akinfenwa CA, Nguyen J, Amaya D, de Gracia B, Ning M, Cox V, De B, Smith BD, Lin L, Beddar S, Hoang H, Koong A, Liao Z.
PMID: 33686374
Adv Radiat Oncol. 2021 May-Jun;6(3):100676. doi: 10.1016/j.adro.2021.100676. Epub 2021 Mar 03.

PURPOSE: Clinical trial enrollment has declined globally as a result of the coronavirus disease 2019 (COVID-19) pandemic. This underscores the importance of structured methods to continue critical medical research safely and efficiently.METHODS AND MATERIALS: We report the effect of...

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Yeboa DN, Akinfenwa CA, Nguyen J, et al. Effectively Conducting Oncology Clinical Trials During the COVID-19 Pandemic. Adv Radiat Oncol. 2021;6(3):100676doi: 10.1016/j.adro.2021.100676.
Yeboa, D. N., Akinfenwa, C. A., Nguyen, J., Amaya, D., de Gracia, B., Ning, M., Cox, V., De, B., Smith, B. D., Lin, L., Beddar, S., Hoang, H., Koong, A., & Liao, Z. (2021). Effectively Conducting Oncology Clinical Trials During the COVID-19 Pandemic. Advances in radiation oncology, 6(3), 100676. https://doi.org/10.1016/j.adro.2021.100676
Yeboa, Debra Nana, et al. "Effectively Conducting Oncology Clinical Trials During the COVID-19 Pandemic." Advances in radiation oncology vol. 6,3 (2021): 100676. doi: https://doi.org/10.1016/j.adro.2021.100676
Yeboa DN, Akinfenwa CA, Nguyen J, Amaya D, de Gracia B, Ning M, Cox V, De B, Smith BD, Lin L, Beddar S, Hoang H, Koong A, Liao Z. Effectively Conducting Oncology Clinical Trials During the COVID-19 Pandemic. Adv Radiat Oncol. 2021 May-Jun;6(3):100676. doi: 10.1016/j.adro.2021.100676. Epub 2021 Mar 03. PMID: 33686374; PMCID: PMC7927592.
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Quantitative Proteomics and Differential Protein Abundance Analysis after the Depletion of PEX3 from Human Cells Identifies Additional Aspects of Protein Targeting to the ER.

International journal of molecular sciences

Zimmermann R, Lang S, Lerner M, Förster F, Nguyen D, Helms V, Schrul B.
PMID: 34884833
Int J Mol Sci. 2021 Dec 01;22(23). doi: 10.3390/ijms222313028.

Protein import into the endoplasmic reticulum (ER) is the first step in the biogenesis of around 10,000 different soluble and membrane proteins in humans. It involves the co- or post-translational targeting of precursor polypeptides to the ER, and their...

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Zimmermann R, Lang S, Lerner M, et al. Quantitative Proteomics and Differential Protein Abundance Analysis after the Depletion of PEX3 from Human Cells Identifies Additional Aspects of Protein Targeting to the ER. Int J Mol Sci. 2021;22(23)doi: 10.3390/ijms222313028.
Zimmermann, R., Lang, S., Lerner, M., Förster, F., Nguyen, D., Helms, V., & Schrul, B. (2021). Quantitative Proteomics and Differential Protein Abundance Analysis after the Depletion of PEX3 from Human Cells Identifies Additional Aspects of Protein Targeting to the ER. International journal of molecular sciences, 22(23), . https://doi.org/10.3390/ijms222313028
Zimmermann, Richard, et al. "Quantitative Proteomics and Differential Protein Abundance Analysis after the Depletion of PEX3 from Human Cells Identifies Additional Aspects of Protein Targeting to the ER." International journal of molecular sciences vol. 22,23 (2021). doi: https://doi.org/10.3390/ijms222313028
Zimmermann R, Lang S, Lerner M, Förster F, Nguyen D, Helms V, Schrul B. Quantitative Proteomics and Differential Protein Abundance Analysis after the Depletion of PEX3 from Human Cells Identifies Additional Aspects of Protein Targeting to the ER. Int J Mol Sci. 2021 Dec 01;22(23). doi: 10.3390/ijms222313028. PMID: 34884833; PMCID: PMC8658024.
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Correction to: The dysregulated innate immune response in severe COVID-19 pneumonia that could drive poorer outcome.

Journal of translational medicine

Blot M, Bour JB, Quenot JP, Bourredjem A, Nguyen M, Guy J, Monier S, Georges M, Large A, Dargent A, Guilhem A, Mouries-Martin S, Barben J, Bouhemad B, Charles PE, Chavanet P, Binquet C, Piroth L.
PMID: 33685465
J Transl Med. 2021 Mar 08;19(1):100. doi: 10.1186/s12967-021-02746-0.

No abstract available.

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Blot M, Bour JB, Quenot JP, et al. Correction to: The dysregulated innate immune response in severe COVID-19 pneumonia that could drive poorer outcome. J Transl Med. 2021;19(1):100doi: 10.1186/s12967-021-02746-0.
Blot, M., Bour, J. B., Quenot, J. P., Bourredjem, A., Nguyen, M., Guy, J., Monier, S., Georges, M., Large, A., Dargent, A., Guilhem, A., Mouries-Martin, S., Barben, J., Bouhemad, B., Charles, P. E., Chavanet, P., Binquet, C., Piroth, L. (2021). Correction to: The dysregulated innate immune response in severe COVID-19 pneumonia that could drive poorer outcome. Journal of translational medicine, 19(1), 100. https://doi.org/10.1186/s12967-021-02746-0
Blot, Mathieu, et al. "Correction to: The dysregulated innate immune response in severe COVID-19 pneumonia that could drive poorer outcome." Journal of translational medicine vol. 19,1 (2021): 100. doi: https://doi.org/10.1186/s12967-021-02746-0
Blot M, Bour JB, Quenot JP, Bourredjem A, Nguyen M, Guy J, Monier S, Georges M, Large A, Dargent A, Guilhem A, Mouries-Martin S, Barben J, Bouhemad B, Charles PE, Chavanet P, Binquet C, Piroth L. Correction to: The dysregulated innate immune response in severe COVID-19 pneumonia that could drive poorer outcome. J Transl Med. 2021 Mar 08;19(1):100. doi: 10.1186/s12967-021-02746-0. PMID: 33685465; PMCID: PMC7938689.
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Multiplexed direct detection of barcoded protein reporters on a nanopore array.

Nature biotechnology

Cardozo N, Zhang K, Doroschak K, Nguyen A, Siddiqui Z, Bogard N, Strauss K, Ceze L, Nivala J.
PMID: 34385692
Nat Biotechnol. 2021 Aug 12; doi: 10.1038/s41587-021-01002-6. Epub 2021 Aug 12.

Detection of specific proteins using nanopores is currently challenging. To address this challenge, we developed a collection of over twenty nanopore-addressable protein tags engineered as reporters (NanoporeTERs, or NTERs). NTERs are constructed with a secretion tag, folded domain and...

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Cardozo N, Zhang K, Doroschak K, et al. Multiplexed direct detection of barcoded protein reporters on a nanopore array. Nat Biotechnol. 2021;doi: 10.1038/s41587-021-01002-6.
Cardozo, N., Zhang, K., Doroschak, K., Nguyen, A., Siddiqui, Z., Bogard, N., Strauss, K., Ceze, L., & Nivala, J. (2021). Multiplexed direct detection of barcoded protein reporters on a nanopore array. Nature biotechnology, . https://doi.org/10.1038/s41587-021-01002-6
Cardozo, Nicolas, et al. "Multiplexed direct detection of barcoded protein reporters on a nanopore array." Nature biotechnology vol. (2021). doi: https://doi.org/10.1038/s41587-021-01002-6
Cardozo N, Zhang K, Doroschak K, Nguyen A, Siddiqui Z, Bogard N, Strauss K, Ceze L, Nivala J. Multiplexed direct detection of barcoded protein reporters on a nanopore array. Nat Biotechnol. 2021 Aug 12; doi: 10.1038/s41587-021-01002-6. Epub 2021 Aug 12. PMID: 34385692.
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Real-World Satisfaction with Secukinumab in Clearing the Skin of Patients with Plaque Psoriasis through 24 Months of Follow-Up: Results from US Dermatology Electronic Medical Records.

Dermatology and therapy

Armstrong AW, Patil D, Levi E, McGuiness CB, Wang X, Wang Y, Chen CC, Nguyen E, Yamauchi PS.
PMID: 34455554
Dermatol Ther (Heidelb). 2021 Oct;11(5):1733-1749. doi: 10.1007/s13555-021-00599-5. Epub 2021 Aug 28.

INTRODUCTION: Information on the long-term treatment satisfaction with secukinumab for patients with plaque psoriasis in real-world settings is limited. The objective of this study was to describe real-world treatment satisfaction in patients with plaque psoriasis who initiated secukinumab using...

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Armstrong AW, Patil D, Levi E, et al. Real-World Satisfaction with Secukinumab in Clearing the Skin of Patients with Plaque Psoriasis through 24 Months of Follow-Up: Results from US Dermatology Electronic Medical Records. Dermatol Ther (Heidelb). 2021;11(5):1733-1749doi: 10.1007/s13555-021-00599-5.
Armstrong, A. W., Patil, D., Levi, E., McGuiness, C. B., Wang, X., Wang, Y., Chen, C. C., Nguyen, E., & Yamauchi, P. S. (2021). Real-World Satisfaction with Secukinumab in Clearing the Skin of Patients with Plaque Psoriasis through 24 Months of Follow-Up: Results from US Dermatology Electronic Medical Records. Dermatology and therapy, 11(5), 1733-1749. https://doi.org/10.1007/s13555-021-00599-5
Armstrong, April W, et al. "Real-World Satisfaction with Secukinumab in Clearing the Skin of Patients with Plaque Psoriasis through 24 Months of Follow-Up: Results from US Dermatology Electronic Medical Records." Dermatology and therapy vol. 11,5 (2021): 1733-1749. doi: https://doi.org/10.1007/s13555-021-00599-5
Armstrong AW, Patil D, Levi E, McGuiness CB, Wang X, Wang Y, Chen CC, Nguyen E, Yamauchi PS. Real-World Satisfaction with Secukinumab in Clearing the Skin of Patients with Plaque Psoriasis through 24 Months of Follow-Up: Results from US Dermatology Electronic Medical Records. Dermatol Ther (Heidelb). 2021 Oct;11(5):1733-1749. doi: 10.1007/s13555-021-00599-5. Epub 2021 Aug 28. PMID: 34455554; PMCID: PMC8484392.
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Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs.

Anderson N, Bernstam EV, Harris PA, Eichmann D, Hersh WR, Johnson SB, Chute CG, Nguyen H, Sim I, Nahm M, Weiner MG, Miller P, DiLaura RP, Overcash M, Lehmann HP, Athey BD, Scheuermann RH, Starren J, Smith JW, Barbour E, Silverstein JC, Krusch DA, Nagarajan R, Becich MJ.
UIID-AD: 2662
2009;84:964-70. doi: 10.1097/ACM.0b013e3181a8144d.

Clinical and translational research increasingly requires computation. Projects may involve multiple computationally oriented groups including information technology (IT) professionals, computer scientists, and biomedical informaticians. However, many biomedical researchers are not aware of the distinctions among these complementary groups, leading...

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Anderson N, Bernstam EV, Harris PA, et al. Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs. 2009;84:964-70doi: 10.1097/ACM.0b013e3181a8144d.
Anderson, N., Bernstam, E. V., Harris, P. A., Eichmann, D., Hersh, W. R., Johnson, S. B., Chute, C. G., Nguyen, H., Sim, I., Nahm, M., Weiner, M. G., Miller, P., DiLaura, R. P., Overcash, M., Lehmann, H. P., Athey, B. D., Scheuermann, R. H., Starren, J., Smith, J. W., Barbour, E., Silverstein, J. C., Krusch, D. A., Nagarajan, R., & Becich, M. J. (2009). Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs. 84964-70. https://doi.org/10.1097/ACM.0b013e3181a8144d
Anderson, N, et al. "Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs." vol. 84 (2009): 964-70. doi: https://doi.org/10.1097/ACM.0b013e3181a8144d
Anderson N, Bernstam EV, Harris PA, Eichmann D, Hersh WR, Johnson SB, Chute CG, Nguyen H, Sim I, Nahm M, Weiner MG, Miller P, DiLaura RP, Overcash M, Lehmann HP, Athey BD, Scheuermann RH, Starren J, Smith JW, Barbour E, Silverstein JC, Krusch DA, Nagarajan R, Becich MJ. Synergies and distinctions between computational disciplines in biomedical research: perspective from the Clinical andTranslational Science Award programs. 2009;84:964-70. doi: 10.1097/ACM.0b013e3181a8144d. UIID-AD: 2662.
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