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Author Correction: Building a global alliance of biofoundries.

Nature communications

Hillson N, Caddick M, Cai Y, Carrasco JA, Chang MW, Curach NC, Bell DJ, Feuvre RL, Friedman DC, Fu X, Gold ND, Herrgård MJ, Holowko MB, Johnson JR, Johnson RA, Keasling JD, Kitney RI, Kondo A, Liu C, Martin VJJ, Menolascina F, Ogino C, Patron NJ, Pavan M, Poh CL, Pretorius IS, Rosser SJ, Scrutton NS, Storch M, Tekotte H, Travnik E, Vickers CE, Yew WS, Yuan Y, Zhao H, Freemont PS.
PMID: 31296848
Nat Commun. 2019 Jul 11;10(1):3132. doi: 10.1038/s41467-019-10862-1.

The original version of this Comment contained errors in the legend of Figure 2, in which the locations of the fifteenth and sixteenth GBA members were incorrectly given as '(15) Australian Genome Foundry, Macquarie University; (16) Australian Foundry for...

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Hillson N, Caddick M, Cai Y, et al. Author Correction: Building a global alliance of biofoundries. Nat Commun. 2019;10(1):3132doi: 10.1038/s41467-019-10862-1.
Hillson, N., Caddick, M., Cai, Y., Carrasco, J. A., Chang, M. W., Curach, N. C., Bell, D. J., Feuvre, R. L., Friedman, D. C., Fu, X., Gold, N. D., Herrgård, M. J., Holowko, M. B., Johnson, J. R., Johnson, R. A., Keasling, J. D., Kitney, R. I., Kondo, A., Liu, C., Martin, V. J. J., Menolascina, F., Ogino, C., Patron, N. J., Pavan, M., Poh, C. L., Pretorius, I. S., Rosser, S. J., Scrutton, N. S., Storch, M., Tekotte, H., Travnik, E., Vickers, C. E., Yew, W. S., Yuan, Y., Zhao, H., & Freemont, P. S. (2019). Author Correction: Building a global alliance of biofoundries. Nature communications, 10(1), 3132. https://doi.org/10.1038/s41467-019-10862-1
Hillson, Nathan, et al. "Author Correction: Building a global alliance of biofoundries." Nature communications vol. 10,1 (2019): 3132. doi: https://doi.org/10.1038/s41467-019-10862-1
Hillson N, Caddick M, Cai Y, Carrasco JA, Chang MW, Curach NC, Bell DJ, Feuvre RL, Friedman DC, Fu X, Gold ND, Herrgård MJ, Holowko MB, Johnson JR, Johnson RA, Keasling JD, Kitney RI, Kondo A, Liu C, Martin VJJ, Menolascina F, Ogino C, Patron NJ, Pavan M, Poh CL, Pretorius IS, Rosser SJ, Scrutton NS, Storch M, Tekotte H, Travnik E, Vickers CE, Yew WS, Yuan Y, Zhao H, Freemont PS. Author Correction: Building a global alliance of biofoundries. Nat Commun. 2019 Jul 11;10(1):3132. doi: 10.1038/s41467-019-10862-1. PMID: 31296848; PMCID: PMC6624256.
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Information spectra and optimal background states for dynamical networks.

Scientific reports

Menolascino D, Ching S.
PMID: 30385795
Sci Rep. 2018 Nov 01;8(1):16181. doi: 10.1038/s41598-018-34528-y.

We consider the notion of stimulus representation over dynamic networks, wherein the network states encode information about the identify of an afferent input (i.e. stimulus). Our goal is to understand how the structure and temporal dynamics of networks support...

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Menolascino D, Ching S. Information spectra and optimal background states for dynamical networks. Sci Rep. 2018;8(1):16181doi: 10.1038/s41598-018-34528-y.
Menolascino, D., & Ching, S. (2018). Information spectra and optimal background states for dynamical networks. Scientific reports, 8(1), 16181. https://doi.org/10.1038/s41598-018-34528-y
Menolascino, Delsin, and Ching, ShiNung. "Information spectra and optimal background states for dynamical networks." Scientific reports vol. 8,1 (2018): 16181. doi: https://doi.org/10.1038/s41598-018-34528-y
Menolascino D, Ching S. Information spectra and optimal background states for dynamical networks. Sci Rep. 2018 Nov 01;8(1):16181. doi: 10.1038/s41598-018-34528-y. PMID: 30385795; PMCID: PMC6212402.
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[No title available]

iScience

Ramos MJ, Bandiera L, Menolascina F, Fallowfield JA.
PMID: 34977507
iScience. 2021 Dec 04;25(1):103549. doi: 10.1016/j.isci.2021.103549. eCollection 2022 Jan 21.

Non-alcoholic fatty liver disease (NAFLD) represents a global healthcare challenge, affecting 1 in 4 adults, and death rates are predicted to rise inexorably. The progressive form of NAFLD, non-alcoholic steatohepatitis (NASH), can lead to fibrosis, cirrhosis, and hepatocellular carcinoma....

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Ramos MJ, Bandiera L, Menolascina F, et al. . iScience. 2021;25(1):103549doi: 10.1016/j.isci.2021.103549.
Ramos, M. J., Bandiera, L., Menolascina, F., & Fallowfield, J. A. (2022). . iScience, 25(1), 103549. https://doi.org/10.1016/j.isci.2021.103549
Ramos, Maria Jimenez, et al. "." iScience vol. 25,1 (2022): 103549. doi: https://doi.org/10.1016/j.isci.2021.103549
Ramos MJ, Bandiera L, Menolascina F, Fallowfield JA. . iScience. 2021 Dec 04;25(1):103549. doi: 10.1016/j.isci.2021.103549. eCollection 2022 Jan 21. PMID: 34977507; PMCID: PMC8689151.
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Face coverings and respiratory tract droplet dispersion.

Royal Society open science

Bandiera L, Pavar G, Pisetta G, Otomo S, Mangano E, Seckl JR, Digard P, Molinari E, Menolascina F, Viola IM.
PMID: 33489292
R Soc Open Sci. 2020 Dec 23;7(12):201663. doi: 10.1098/rsos.201663. eCollection 2020 Dec.

Respiratory droplets are the primary transmission route for SARS-CoV-2, a principle which drives social distancing guidelines. Evidence suggests that virus transmission can be reduced by face coverings, but robust evidence for how mask usage might affect safe distancing parameters...

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Bandiera L, Pavar G, Pisetta G, et al. Face coverings and respiratory tract droplet dispersion. R Soc Open Sci. 2020;7(12):201663doi: 10.1098/rsos.201663.
Bandiera, L., Pavar, G., Pisetta, G., Otomo, S., Mangano, E., Seckl, J. R., Digard, P., Molinari, E., Menolascina, F., & Viola, I. M. (2020). Face coverings and respiratory tract droplet dispersion. Royal Society open science, 7(12), 201663. https://doi.org/10.1098/rsos.201663
Bandiera, Lucia, et al. "Face coverings and respiratory tract droplet dispersion." Royal Society open science vol. 7,12 (2020): 201663. doi: https://doi.org/10.1098/rsos.201663
Bandiera L, Pavar G, Pisetta G, Otomo S, Mangano E, Seckl JR, Digard P, Molinari E, Menolascina F, Viola IM. Face coverings and respiratory tract droplet dispersion. R Soc Open Sci. 2020 Dec 23;7(12):201663. doi: 10.1098/rsos.201663. eCollection 2020 Dec. PMID: 33489292; PMCID: PMC7813263.
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Logarithmic sensing in .

NPJ systems biology and applications

Menolascina F, Rusconi R, Fernandez VI, Smriga S, Aminzare Z, Sontag ED, Stocker R.
PMID: 28725484
NPJ Syst Biol Appl. 2017 Jan 19;3:16036. doi: 10.1038/npjsba.2016.36. eCollection 2017.

Aerotaxis, the directed migration along oxygen gradients, allows many microorganisms to locate favorable oxygen concentrations. Despite oxygen's fundamental role for life, even key aspects of aerotaxis remain poorly understood. In

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Menolascina F, Rusconi R, Fernandez VI, et al. Logarithmic sensing in . NPJ Syst Biol Appl. 2017;3:16036doi: 10.1038/npjsba.2016.36.
Menolascina, F., Rusconi, R., Fernandez, V. I., Smriga, S., Aminzare, Z., Sontag, E. D., & Stocker, R. (2017). Logarithmic sensing in . NPJ systems biology and applications, 316036. https://doi.org/10.1038/npjsba.2016.36
Menolascina, Filippo, et al. "Logarithmic sensing in ." NPJ systems biology and applications vol. 3 (2017): 16036. doi: https://doi.org/10.1038/npjsba.2016.36
Menolascina F, Rusconi R, Fernandez VI, Smriga S, Aminzare Z, Sontag ED, Stocker R. Logarithmic sensing in . NPJ Syst Biol Appl. 2017 Jan 19;3:16036. doi: 10.1038/npjsba.2016.36. eCollection 2017. PMID: 28725484; PMCID: PMC5516866.
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Publisher Correction: An automated Raman-based platform for the sorting of live cells by functional properties.

Nature microbiology

Lee KS, Palatinszky M, Pereira FC, Nguyen J, Fernandez VI, Mueller AJ, Menolascina F, Daims H, Berry D, Wagner M, Stocker R.
PMID: 30980037
Nat Microbiol. 2019 May;4(5):902-903. doi: 10.1038/s41564-019-0446-1.

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

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Lee KS, Palatinszky M, Pereira FC, et al. Publisher Correction: An automated Raman-based platform for the sorting of live cells by functional properties. Nat Microbiol. 2019;4(5):902-903doi: 10.1038/s41564-019-0446-1.
Lee, K. S., Palatinszky, M., Pereira, F. C., Nguyen, J., Fernandez, V. I., Mueller, A. J., Menolascina, F., Daims, H., Berry, D., Wagner, M., & Stocker, R. (2019). Publisher Correction: An automated Raman-based platform for the sorting of live cells by functional properties. Nature microbiology, 4(5), 902-903. https://doi.org/10.1038/s41564-019-0446-1
Lee, Kang Soo, et al. "Publisher Correction: An automated Raman-based platform for the sorting of live cells by functional properties." Nature microbiology vol. 4,5 (2019): 902-903. doi: https://doi.org/10.1038/s41564-019-0446-1
Lee KS, Palatinszky M, Pereira FC, Nguyen J, Fernandez VI, Mueller AJ, Menolascina F, Daims H, Berry D, Wagner M, Stocker R. Publisher Correction: An automated Raman-based platform for the sorting of live cells by functional properties. Nat Microbiol. 2019 May;4(5):902-903. doi: 10.1038/s41564-019-0446-1. PMID: 30980037.
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Statistical Design of Experiments for Synthetic Biology.

ACS synthetic biology

Gilman J, Walls L, Bandiera L, Menolascina F.
PMID: 33406821
ACS Synth Biol. 2021 Jan 15;10(1):1-18. doi: 10.1021/acssynbio.0c00385. Epub 2021 Jan 07.

The design and optimization of biological systems is an inherently complex undertaking that requires careful balancing of myriad synergistic and antagonistic variables. However, despite this complexity, much synthetic biology research is predicated on One Factor at A Time (OFAT)...

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Gilman J, Walls L, Bandiera L, et al. Statistical Design of Experiments for Synthetic Biology. ACS Synth Biol. 2021;10(1):1-18doi: 10.1021/acssynbio.0c00385.
Gilman, J., Walls, L., Bandiera, L., & Menolascina, F. (2021). Statistical Design of Experiments for Synthetic Biology. ACS synthetic biology, 10(1), 1-18. https://doi.org/10.1021/acssynbio.0c00385
Gilman, James, et al. "Statistical Design of Experiments for Synthetic Biology." ACS synthetic biology vol. 10,1 (2021): 1-18. doi: https://doi.org/10.1021/acssynbio.0c00385
Gilman J, Walls L, Bandiera L, Menolascina F. Statistical Design of Experiments for Synthetic Biology. ACS Synth Biol. 2021 Jan 15;10(1):1-18. doi: 10.1021/acssynbio.0c00385. Epub 2021 Jan 07. PMID: 33406821.
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[No title available]

iScience

Ramos MJ, Bandiera L, Menolascina F, Fallowfield JA.
PMID: 34977507
iScience. 2021 Dec 04;25(1):103549. doi: 10.1016/j.isci.2021.103549. eCollection 2022 Jan 21.

Non-alcoholic fatty liver disease (NAFLD) represents a global healthcare challenge, affecting 1 in 4 adults, and death rates are predicted to rise inexorably. The progressive form of NAFLD, non-alcoholic steatohepatitis (NASH), can lead to fibrosis, cirrhosis, and hepatocellular carcinoma....

Cite
Ramos MJ, Bandiera L, Menolascina F, et al. . iScience. 2021;25(1):103549doi: 10.1016/j.isci.2021.103549.
Ramos, M. J., Bandiera, L., Menolascina, F., & Fallowfield, J. A. (2022). . iScience, 25(1), 103549. https://doi.org/10.1016/j.isci.2021.103549
Ramos, Maria Jimenez, et al. "." iScience vol. 25,1 (2022): 103549. doi: https://doi.org/10.1016/j.isci.2021.103549
Ramos MJ, Bandiera L, Menolascina F, Fallowfield JA. . iScience. 2021 Dec 04;25(1):103549. doi: 10.1016/j.isci.2021.103549. eCollection 2022 Jan 21. PMID: 34977507; PMCID: PMC8689151.
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Phylogenetic relationships and codon usage bias amongst cluster K mycobacteriophages.

G3 (Bethesda, Md.)

Crane A, Versoza CJ, Hua T, Kapoor R, Lloyd L, Mehta R, Menolascino J, Morais A, Munig S, Patel Z, Sackett D, Schmit B, Sy M, Pfeifer SP.
PMID: 34849792
G3 (Bethesda). 2021 Oct 19;11(11). doi: 10.1093/g3journal/jkab291.

Bacteriophages infecting pathogenic hosts play an important role in medical research, not only as potential treatments for antibiotic-resistant infections but also offering novel insights into pathogen genetics and evolution. A prominent example is cluster K mycobacteriophages infecting Mycobacterium tuberculosis,...

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Crane A, Versoza CJ, Hua T, et al. Phylogenetic relationships and codon usage bias amongst cluster K mycobacteriophages. G3 (Bethesda). 2021;11(11)doi: 10.1093/g3journal/jkab291.
Crane, A., Versoza, C. J., Hua, T., Kapoor, R., Lloyd, L., Mehta, R., Menolascino, J., Morais, A., Munig, S., Patel, Z., Sackett, D., Schmit, B., Sy, M., & Pfeifer, S. P. (2021). Phylogenetic relationships and codon usage bias amongst cluster K mycobacteriophages. G3 (Bethesda, Md.), 11(11), . https://doi.org/10.1093/g3journal/jkab291
Crane, Adele, et al. "Phylogenetic relationships and codon usage bias amongst cluster K mycobacteriophages." G3 (Bethesda, Md.) vol. 11,11 (2021). doi: https://doi.org/10.1093/g3journal/jkab291
Crane A, Versoza CJ, Hua T, Kapoor R, Lloyd L, Mehta R, Menolascino J, Morais A, Munig S, Patel Z, Sackett D, Schmit B, Sy M, Pfeifer SP. Phylogenetic relationships and codon usage bias amongst cluster K mycobacteriophages. G3 (Bethesda). 2021 Oct 19;11(11). doi: 10.1093/g3journal/jkab291. PMID: 34849792; PMCID: PMC8527509.
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Phylogenetic relationships and codon usage bias amongst cluster K mycobacteriophages.

G3 (Bethesda, Md.)

Crane A, Versoza CJ, Hua T, Kapoor R, Lloyd L, Mehta R, Menolascino J, Morais A, Munig S, Patel Z, Sackett D, Schmit B, Sy M, Pfeifer SP.
PMID: 34849792
G3 (Bethesda). 2021 Oct 19;11(11). doi: 10.1093/g3journal/jkab291.

Bacteriophages infecting pathogenic hosts play an important role in medical research, not only as potential treatments for antibiotic-resistant infections but also offering novel insights into pathogen genetics and evolution. A prominent example is cluster K mycobacteriophages infecting Mycobacterium tuberculosis,...

Cite
Crane A, Versoza CJ, Hua T, et al. Phylogenetic relationships and codon usage bias amongst cluster K mycobacteriophages. G3 (Bethesda). 2021;11(11)doi: 10.1093/g3journal/jkab291.
Crane, A., Versoza, C. J., Hua, T., Kapoor, R., Lloyd, L., Mehta, R., Menolascino, J., Morais, A., Munig, S., Patel, Z., Sackett, D., Schmit, B., Sy, M., & Pfeifer, S. P. (2021). Phylogenetic relationships and codon usage bias amongst cluster K mycobacteriophages. G3 (Bethesda, Md.), 11(11), . https://doi.org/10.1093/g3journal/jkab291
Crane, Adele, et al. "Phylogenetic relationships and codon usage bias amongst cluster K mycobacteriophages." G3 (Bethesda, Md.) vol. 11,11 (2021). doi: https://doi.org/10.1093/g3journal/jkab291
Crane A, Versoza CJ, Hua T, Kapoor R, Lloyd L, Mehta R, Menolascino J, Morais A, Munig S, Patel Z, Sackett D, Schmit B, Sy M, Pfeifer SP. Phylogenetic relationships and codon usage bias amongst cluster K mycobacteriophages. G3 (Bethesda). 2021 Oct 19;11(11). doi: 10.1093/g3journal/jkab291. PMID: 34849792; PMCID: PMC8527509.
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Showing 49 to 10 of 10 entries