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PRGdb 4.0: an updated database dedicated to genes involved in plant disease resistance process.

Nucleic acids research

Calle García J, Guadagno A, Paytuvi-Gallart A, Saera-Vila A, Amoroso CG, D'Esposito D, Andolfo G, Aiese Cigliano R, Sanseverino W, Ercolano MR.
PMID: 34850118
Nucleic Acids Res. 2021 Nov 24; doi: 10.1093/nar/gkab1087. Epub 2021 Nov 24.

The Plant Resistance Genes database (PRGdb; http://prgdb.org/prgdb4/) has been greatly expanded, keeping pace with the increasing amount of available knowledge and data (sequenced proteomes, cloned genes, public analysis data, etc.). The easy-to-use style of the database website has been...

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Calle García J, Guadagno A, Paytuvi-Gallart A, et al. PRGdb 4.0: an updated database dedicated to genes involved in plant disease resistance process. Nucleic Acids Res. 2021;doi: 10.1093/nar/gkab1087.
Calle García, J., Guadagno, A., Paytuvi-Gallart, A., Saera-Vila, A., Amoroso, C. G., D'Esposito, D., Andolfo, G., Aiese Cigliano, R., Sanseverino, W., & Ercolano, M. R. (2021). PRGdb 4.0: an updated database dedicated to genes involved in plant disease resistance process. Nucleic acids research, . https://doi.org/10.1093/nar/gkab1087
Calle García, Joan, et al. "PRGdb 4.0: an updated database dedicated to genes involved in plant disease resistance process." Nucleic acids research vol. (2021). doi: https://doi.org/10.1093/nar/gkab1087
Calle García J, Guadagno A, Paytuvi-Gallart A, Saera-Vila A, Amoroso CG, D'Esposito D, Andolfo G, Aiese Cigliano R, Sanseverino W, Ercolano MR. PRGdb 4.0: an updated database dedicated to genes involved in plant disease resistance process. Nucleic Acids Res. 2021 Nov 24; doi: 10.1093/nar/gkab1087. Epub 2021 Nov 24. PMID: 34850118.
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The link between blindness onset and audiospatial processing: testing audiomotor cues in acoustic virtual reality.

Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference

Esposito D, Bollini A, Gori M.
PMID: 34892457
Annu Int Conf IEEE Eng Med Biol Soc. 2021 Nov;2021:5880-5884. doi: 10.1109/EMBC46164.2021.9629699.

Vision seems essential for cross-modal calibration of auditory cues in spatial perception. Previous findings showed that, in some specific tasks such as sound localization, blind individuals have enhanced skills, suggesting that the audiomotor loop might partially compensate for early...

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Esposito D, Bollini A, Gori M. The link between blindness onset and audiospatial processing: testing audiomotor cues in acoustic virtual reality. Annu Int Conf IEEE Eng Med Biol Soc. 2021;2021:5880-5884doi: 10.1109/EMBC46164.2021.9629699.
Esposito, D., Bollini, A., & Gori, M. (2021). The link between blindness onset and audiospatial processing: testing audiomotor cues in acoustic virtual reality. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference, 20215880-5884. https://doi.org/10.1109/EMBC46164.2021.9629699
Esposito, Davide, et al. "The link between blindness onset and audiospatial processing: testing audiomotor cues in acoustic virtual reality." Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference vol. 2021 (2021): 5880-5884. doi: https://doi.org/10.1109/EMBC46164.2021.9629699
Esposito D, Bollini A, Gori M. The link between blindness onset and audiospatial processing: testing audiomotor cues in acoustic virtual reality. Annu Int Conf IEEE Eng Med Biol Soc. 2021 Nov;2021:5880-5884. doi: 10.1109/EMBC46164.2021.9629699. PMID: 34892457.
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Focal neural perturbations reshape low-dimensional trajectories of brain activity supporting cognitive performance.

Nature communications

Iyer KK, Hwang K, Hearne LJ, Muller E, D'Esposito M, Shine JM, Cocchi L.
PMID: 35013147
Nat Commun. 2022 Jan 10;13(1):4. doi: 10.1038/s41467-021-26978-2.

The emergence of distributed patterns of neural activity supporting brain functions and behavior can be understood by study of the brain's low-dimensional topology. Functional neuroimaging demonstrates that brain activity linked to adaptive behavior is constrained to low-dimensional manifolds. In...

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Iyer KK, Hwang K, Hearne LJ, et al. Focal neural perturbations reshape low-dimensional trajectories of brain activity supporting cognitive performance. Nat Commun. 2022;13(1):4doi: 10.1038/s41467-021-26978-2.
Iyer, K. K., Hwang, K., Hearne, L. J., Muller, E., D'Esposito, M., Shine, J. M., & Cocchi, L. (2022). Focal neural perturbations reshape low-dimensional trajectories of brain activity supporting cognitive performance. Nature communications, 13(1), 4. https://doi.org/10.1038/s41467-021-26978-2
Iyer, Kartik K, et al. "Focal neural perturbations reshape low-dimensional trajectories of brain activity supporting cognitive performance." Nature communications vol. 13,1 (2022): 4. doi: https://doi.org/10.1038/s41467-021-26978-2
Iyer KK, Hwang K, Hearne LJ, Muller E, D'Esposito M, Shine JM, Cocchi L. Focal neural perturbations reshape low-dimensional trajectories of brain activity supporting cognitive performance. Nat Commun. 2022 Jan 10;13(1):4. doi: 10.1038/s41467-021-26978-2. PMID: 35013147.
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The link between blindness onset and audiospatial processing: testing audiomotor cues in acoustic virtual reality.

Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference

Esposito D, Bollini A, Gori M.
PMID: 34892457
Annu Int Conf IEEE Eng Med Biol Soc. 2021 Nov;2021:5880-5884. doi: 10.1109/EMBC46164.2021.9629699.

Vision seems essential for cross-modal calibration of auditory cues in spatial perception. Previous findings showed that, in some specific tasks such as sound localization, blind individuals have enhanced skills, suggesting that the audiomotor loop might partially compensate for early...

Cite
Esposito D, Bollini A, Gori M. The link between blindness onset and audiospatial processing: testing audiomotor cues in acoustic virtual reality. Annu Int Conf IEEE Eng Med Biol Soc. 2021;2021:5880-5884doi: 10.1109/EMBC46164.2021.9629699.
Esposito, D., Bollini, A., & Gori, M. (2021). The link between blindness onset and audiospatial processing: testing audiomotor cues in acoustic virtual reality. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference, 20215880-5884. https://doi.org/10.1109/EMBC46164.2021.9629699
Esposito, Davide, et al. "The link between blindness onset and audiospatial processing: testing audiomotor cues in acoustic virtual reality." Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference vol. 2021 (2021): 5880-5884. doi: https://doi.org/10.1109/EMBC46164.2021.9629699
Esposito D, Bollini A, Gori M. The link between blindness onset and audiospatial processing: testing audiomotor cues in acoustic virtual reality. Annu Int Conf IEEE Eng Med Biol Soc. 2021 Nov;2021:5880-5884. doi: 10.1109/EMBC46164.2021.9629699. PMID: 34892457.
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Live tumor imaging shows macrophage induction and TMEM-mediated enrichment of cancer stem cells during metastatic dissemination.

Nature communications

Sharma VP, Tang B, Wang Y, Duran CL, Karagiannis GS, Xue EA, Entenberg D, Borriello L, Coste A, Eddy RJ, Kim G, Ye X, Jones JG, Grunblatt E, Agi N, Roy S, Bandyopadhyaya G, Adler E, Surve CR, Esposito D, Goswami S, Segall JE, Guo W, Condeelis JS, Wakefield LM, Oktay MH.
PMID: 34911937
Nat Commun. 2021 Dec 15;12(1):7300. doi: 10.1038/s41467-021-27308-2.

Cancer stem cells (CSCs) play an important role during metastasis, but the dynamic behavior and induction mechanisms of CSCs are not well understood. Here, we employ high-resolution intravital microscopy using a CSC biosensor to directly observe CSCs in live...

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Sharma VP, Tang B, Wang Y, et al. Live tumor imaging shows macrophage induction and TMEM-mediated enrichment of cancer stem cells during metastatic dissemination. Nat Commun. 2021;12(1):7300doi: 10.1038/s41467-021-27308-2.
Sharma, V. P., Tang, B., Wang, Y., Duran, C. L., Karagiannis, G. S., Xue, E. A., Entenberg, D., Borriello, L., Coste, A., Eddy, R. J., Kim, G., Ye, X., Jones, J. G., Grunblatt, E., Agi, N., Roy, S., Bandyopadhyaya, G., Adler, E., Surve, C. R., Esposito, D., Goswami, S., Segall, J. E., Guo, W., Condeelis, J. S., Wakefield, L. M., & Oktay, M. H. (2021). Live tumor imaging shows macrophage induction and TMEM-mediated enrichment of cancer stem cells during metastatic dissemination. Nature communications, 12(1), 7300. https://doi.org/10.1038/s41467-021-27308-2
Sharma, Ved P, et al. "Live tumor imaging shows macrophage induction and TMEM-mediated enrichment of cancer stem cells during metastatic dissemination." Nature communications vol. 12,1 (2021): 7300. doi: https://doi.org/10.1038/s41467-021-27308-2
Sharma VP, Tang B, Wang Y, Duran CL, Karagiannis GS, Xue EA, Entenberg D, Borriello L, Coste A, Eddy RJ, Kim G, Ye X, Jones JG, Grunblatt E, Agi N, Roy S, Bandyopadhyaya G, Adler E, Surve CR, Esposito D, Goswami S, Segall JE, Guo W, Condeelis JS, Wakefield LM, Oktay MH. Live tumor imaging shows macrophage induction and TMEM-mediated enrichment of cancer stem cells during metastatic dissemination. Nat Commun. 2021 Dec 15;12(1):7300. doi: 10.1038/s41467-021-27308-2. PMID: 34911937; PMCID: PMC8674234.
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Double layer stent for the treatment of leaks and fistula after upper gastrointestinal oncologic surgery: a retrospective study.

Updates in surgery

Mandarino FV, Esposito D, Spelta GNE, Cavestro GM, Rosati R, Parise P, Gemma MF, Fanti L.
PMID: 34510378
Updates Surg. 2021 Sep 12; doi: 10.1007/s13304-021-01155-8. Epub 2021 Sep 12.

Anastomotic dehiscence is one of the most morbidity related and deadly complication after foregut oncologic surgery. The aim of the study is to evaluate the effectiveness of double layer stents (Niti-S™ Beta™ Esophageal Stent) in the management of dehiscences...

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Mandarino FV, Esposito D, Spelta GNE, et al. Double layer stent for the treatment of leaks and fistula after upper gastrointestinal oncologic surgery: a retrospective study. Updates Surg. 2021;doi: 10.1007/s13304-021-01155-8.
Mandarino, F. V., Esposito, D., Spelta, G. N. E., Cavestro, G. M., Rosati, R., Parise, P., Gemma, M. F., & Fanti, L. (2021). Double layer stent for the treatment of leaks and fistula after upper gastrointestinal oncologic surgery: a retrospective study. Updates in surgery, . https://doi.org/10.1007/s13304-021-01155-8
Mandarino, Francesco Vito, et al. "Double layer stent for the treatment of leaks and fistula after upper gastrointestinal oncologic surgery: a retrospective study." Updates in surgery vol. (2021). doi: https://doi.org/10.1007/s13304-021-01155-8
Mandarino FV, Esposito D, Spelta GNE, Cavestro GM, Rosati R, Parise P, Gemma MF, Fanti L. Double layer stent for the treatment of leaks and fistula after upper gastrointestinal oncologic surgery: a retrospective study. Updates Surg. 2021 Sep 12; doi: 10.1007/s13304-021-01155-8. Epub 2021 Sep 12. PMID: 34510378.
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Rapidly increasing SARS-CoV-2 seroprevalence and limited clinical disease in three Malian communities: a prospective cohort study.

medRxiv : the preprint server for health sciences

Sagara I, Woodford J, Kone M, Assadou MH, Katile A, Attaher O, Zeguime A, Doucoure M, Higbee E, Lane J, Doritchamou J, Zaidi I, Esposito D, Kwan J, Sadtler K, Dicko A, Duffy P.
PMID: 33948607
medRxiv. 2021 Apr 29; doi: 10.1101/2021.04.26.21256016.

BACKGROUND: The extent of SARS-CoV-2 exposure and transmission in Mali and the surrounding region is not well understood, although infection has been confirmed in nearly 14,000 symptomatic individuals and their contacts since the first case in March 2020. We...

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Sagara I, Woodford J, Kone M, et al. Rapidly increasing SARS-CoV-2 seroprevalence and limited clinical disease in three Malian communities: a prospective cohort study. medRxiv. 2021;doi: 10.1101/2021.04.26.21256016.
Sagara, I., Woodford, J., Kone, M., Assadou, M. H., Katile, A., Attaher, O., Zeguime, A., Doucoure, M., Higbee, E., Lane, J., Doritchamou, J., Zaidi, I., Esposito, D., Kwan, J., Sadtler, K., Dicko, A., & Duffy, P. (2021). Rapidly increasing SARS-CoV-2 seroprevalence and limited clinical disease in three Malian communities: a prospective cohort study. medRxiv : the preprint server for health sciences, . https://doi.org/10.1101/2021.04.26.21256016
Sagara, Issaka, et al. "Rapidly increasing SARS-CoV-2 seroprevalence and limited clinical disease in three Malian communities: a prospective cohort study." medRxiv : the preprint server for health sciences vol. (2021). doi: https://doi.org/10.1101/2021.04.26.21256016
Sagara I, Woodford J, Kone M, Assadou MH, Katile A, Attaher O, Zeguime A, Doucoure M, Higbee E, Lane J, Doritchamou J, Zaidi I, Esposito D, Kwan J, Sadtler K, Dicko A, Duffy P. Rapidly increasing SARS-CoV-2 seroprevalence and limited clinical disease in three Malian communities: a prospective cohort study. medRxiv. 2021 Apr 29; doi: 10.1101/2021.04.26.21256016. PMID: 33948607; PMCID: PMC8095226.
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NMR .

Biomolecular NMR assignments

Sharma AK, Dyba M, Tonelli M, Smith B, Gillette WK, Esposito D, Nissley DV, McCormick F, Maciag AE.
PMID: 34686998
Biomol NMR Assign. 2021 Oct 22; doi: 10.1007/s12104-021-10050-7. Epub 2021 Oct 22.

RAS proteins cycling between the active-form (GTP-bound) and inactive-form (GDP-bound) play a key role in cell signaling pathways that control cell survival, proliferation, and differentiation. Mutations at codon 12, 13, and 61 in RAS are known to attenuate its...

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Sharma AK, Dyba M, Tonelli M, et al. NMR . Biomol NMR Assign. 2021;doi: 10.1007/s12104-021-10050-7.
Sharma, A. K., Dyba, M., Tonelli, M., Smith, B., Gillette, W. K., Esposito, D., Nissley, D. V., McCormick, F., & Maciag, A. E. (2021). NMR . Biomolecular NMR assignments, . https://doi.org/10.1007/s12104-021-10050-7
Sharma, Alok K, et al. "NMR ." Biomolecular NMR assignments vol. (2021). doi: https://doi.org/10.1007/s12104-021-10050-7
Sharma AK, Dyba M, Tonelli M, Smith B, Gillette WK, Esposito D, Nissley DV, McCormick F, Maciag AE. NMR . Biomol NMR Assign. 2021 Oct 22; doi: 10.1007/s12104-021-10050-7. Epub 2021 Oct 22. PMID: 34686998.
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Severe Acute Respiratory Syndrome Coronavirus 2 Seroassay Performance and Optimization in a Population With High Background Reactivity in Mali.

The Journal of infectious diseases

Woodford J, Sagara I, Dicko A, Zeguime A, Doucoure M, Kwan J, Zaidi I, Doritchamou J, Snow-Smith M, Alani N, Renn J, Kosik I, Holly J, Yewdell J, Esposito D, Sadtler K, Duffy P.
PMID: 34612499
J Infect Dis. 2021 Dec 15;224(12):2001-2009. doi: 10.1093/infdis/jiab498.

BACKGROUND: False positivity may hinder the utility of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) serological tests in sub-Saharan Africa.METHODS: From 312 Malian samples collected before 2020, we measured antibodies to the commonly tested SARS-CoV-2 antigens and 4 other...

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Woodford J, Sagara I, Dicko A, et al. Severe Acute Respiratory Syndrome Coronavirus 2 Seroassay Performance and Optimization in a Population With High Background Reactivity in Mali. J Infect Dis. 2021;224(12):2001-2009doi: 10.1093/infdis/jiab498.
Woodford, J., Sagara, I., Dicko, A., Zeguime, A., Doucoure, M., Kwan, J., Zaidi, I., Doritchamou, J., Snow-Smith, M., Alani, N., Renn, J., Kosik, I., Holly, J., Yewdell, J., Esposito, D., Sadtler, K., & Duffy, P. (2021). Severe Acute Respiratory Syndrome Coronavirus 2 Seroassay Performance and Optimization in a Population With High Background Reactivity in Mali. The Journal of infectious diseases, 224(12), 2001-2009. https://doi.org/10.1093/infdis/jiab498
Woodford, John, et al. "Severe Acute Respiratory Syndrome Coronavirus 2 Seroassay Performance and Optimization in a Population With High Background Reactivity in Mali." The Journal of infectious diseases vol. 224,12 (2021): 2001-2009. doi: https://doi.org/10.1093/infdis/jiab498
Woodford J, Sagara I, Dicko A, Zeguime A, Doucoure M, Kwan J, Zaidi I, Doritchamou J, Snow-Smith M, Alani N, Renn J, Kosik I, Holly J, Yewdell J, Esposito D, Sadtler K, Duffy P. Severe Acute Respiratory Syndrome Coronavirus 2 Seroassay Performance and Optimization in a Population With High Background Reactivity in Mali. J Infect Dis. 2021 Dec 15;224(12):2001-2009. doi: 10.1093/infdis/jiab498. PMID: 34612499; PMCID: PMC8522418.
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Leptin and TGF-β1 Downregulate PREP1 Expression in Human Adipose-Derived Mesenchymal Stem Cells and Mature Adipocytes.

Frontiers in cell and developmental biology

Bruno A, Di Sano C, Simon HU, Chanez P, Patti AM, Di Vincenzo S, Dino P, D'Esposito V, Formisano P, Beguinot F, Pace E.
PMID: 34327205
Front Cell Dev Biol. 2021 Jul 13;9:700481. doi: 10.3389/fcell.2021.700481. eCollection 2021.

Adipose tissue is widely recognized as an extremely active endocrine organ producing adipokines as leptin that bridge metabolism and the immune system. Pre-B-cell leukemia homeobox (Pbx)-regulating protein-1 (PREP1) is a ubiquitous homeodomain transcription factor involved in the adipogenic differentiation...

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Bruno A, Di Sano C, Simon HU, et al. Leptin and TGF-β1 Downregulate PREP1 Expression in Human Adipose-Derived Mesenchymal Stem Cells and Mature Adipocytes. Front Cell Dev Biol. 2021;9:700481doi: 10.3389/fcell.2021.700481.
Bruno, A., Di Sano, C., Simon, H. U., Chanez, P., Patti, A. M., Di Vincenzo, S., Dino, P., D'Esposito, V., Formisano, P., Beguinot, F., & Pace, E. (2021). Leptin and TGF-β1 Downregulate PREP1 Expression in Human Adipose-Derived Mesenchymal Stem Cells and Mature Adipocytes. Frontiers in cell and developmental biology, 9700481. https://doi.org/10.3389/fcell.2021.700481
Bruno, Andreina, et al. "Leptin and TGF-β1 Downregulate PREP1 Expression in Human Adipose-Derived Mesenchymal Stem Cells and Mature Adipocytes." Frontiers in cell and developmental biology vol. 9 (2021): 700481. doi: https://doi.org/10.3389/fcell.2021.700481
Bruno A, Di Sano C, Simon HU, Chanez P, Patti AM, Di Vincenzo S, Dino P, D'Esposito V, Formisano P, Beguinot F, Pace E. Leptin and TGF-β1 Downregulate PREP1 Expression in Human Adipose-Derived Mesenchymal Stem Cells and Mature Adipocytes. Front Cell Dev Biol. 2021 Jul 13;9:700481. doi: 10.3389/fcell.2021.700481. eCollection 2021. PMID: 34327205; PMCID: PMC8315375.
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Early Alpine occupation backdates westward human migration in Late Glacial Europe.

Current biology : CB

Bortolini E, Pagani L, Oxilia G, Posth C, Fontana F, Badino F, Saupe T, Montinaro F, Margaritora D, Romandini M, Lugli F, Papini A, Boggioni M, Perrini N, Oxilia A, Cigliano RA, Barcelona R, Visentin D, Fasser N, Arrighi S, Figus C, Marciani G, Silvestrini S, Bernardini F, Menghi Sartorio JC, Fiorenza L, Cecchi JM, Tuniz C, Kivisild T, Gianfrancesco F, Peresani M, Scheib CL, Talamo S, D'Esposito M, Benazzi S.
PMID: 33887180
Curr Biol. 2021 Jun 07;31(11):2484-2493.e7. doi: 10.1016/j.cub.2021.03.078. Epub 2021 Apr 21.

Before the end of the Last Glacial Maximum (LGM, ∼16.5 ka ago)

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Bortolini E, Pagani L, Oxilia G, et al. Early Alpine occupation backdates westward human migration in Late Glacial Europe. Curr Biol. 2021;31(11):2484-2493.e7doi: 10.1016/j.cub.2021.03.078.
Bortolini, E., Pagani, L., Oxilia, G., Posth, C., Fontana, F., Badino, F., Saupe, T., Montinaro, F., Margaritora, D., Romandini, M., Lugli, F., Papini, A., Boggioni, M., Perrini, N., Oxilia, A., Cigliano, R. A., Barcelona, R., Visentin, D., Fasser, N., Arrighi, S., Figus, C., Marciani, G., Silvestrini, S., Bernardini, F., Menghi Sartorio, J. C., Fiorenza, L., Cecchi, J. M., Tuniz, C., Kivisild, T., Gianfrancesco, F., Peresani, M., Scheib, C. L., Talamo, S., D'Esposito, M., & Benazzi, S. (2021). Early Alpine occupation backdates westward human migration in Late Glacial Europe. Current biology : CB, 31(11), 2484-2493.e7. https://doi.org/10.1016/j.cub.2021.03.078
Bortolini, Eugenio, et al. "Early Alpine occupation backdates westward human migration in Late Glacial Europe." Current biology : CB vol. 31,11 (2021): 2484-2493.e7. doi: https://doi.org/10.1016/j.cub.2021.03.078
Bortolini E, Pagani L, Oxilia G, Posth C, Fontana F, Badino F, Saupe T, Montinaro F, Margaritora D, Romandini M, Lugli F, Papini A, Boggioni M, Perrini N, Oxilia A, Cigliano RA, Barcelona R, Visentin D, Fasser N, Arrighi S, Figus C, Marciani G, Silvestrini S, Bernardini F, Menghi Sartorio JC, Fiorenza L, Cecchi JM, Tuniz C, Kivisild T, Gianfrancesco F, Peresani M, Scheib CL, Talamo S, D'Esposito M, Benazzi S. Early Alpine occupation backdates westward human migration in Late Glacial Europe. Curr Biol. 2021 Jun 07;31(11):2484-2493.e7. doi: 10.1016/j.cub.2021.03.078. Epub 2021 Apr 21. PMID: 33887180.
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