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Nrd1p identifies aberrant and natural exosomal target messages during the nuclear mRNA surveillance in Saccharomyces cerevisiae.

Nucleic acids research

Singh P, Chaudhuri A, Banerjea M, Marathe N, Das B.
PMID: 34664673
Nucleic Acids Res. 2021 Nov 18;49(20):11512-11536. doi: 10.1093/nar/gkab930.

Nuclear degradation of aberrant mRNAs in Saccharomyces cerevisiae is accomplished by the nuclear exosome and its cofactors TRAMP/CTEXT. Evidence from this investigation establishes a universal role of the Nrd1p-Nab3p-Sen1p (NNS) complex in the nuclear decay of all categories of...

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Singh P, Chaudhuri A, Banerjea M, et al. Nrd1p identifies aberrant and natural exosomal target messages during the nuclear mRNA surveillance in Saccharomyces cerevisiae. Nucleic Acids Res. 2021;49(20):11512-11536doi: 10.1093/nar/gkab930.
Singh, P., Chaudhuri, A., Banerjea, M., Marathe, N., & Das, B. (2021). Nrd1p identifies aberrant and natural exosomal target messages during the nuclear mRNA surveillance in Saccharomyces cerevisiae. Nucleic acids research, 49(20), 11512-11536. https://doi.org/10.1093/nar/gkab930
Singh, Pragyan, et al. "Nrd1p identifies aberrant and natural exosomal target messages during the nuclear mRNA surveillance in Saccharomyces cerevisiae." Nucleic acids research vol. 49,20 (2021): 11512-11536. doi: https://doi.org/10.1093/nar/gkab930
Singh P, Chaudhuri A, Banerjea M, Marathe N, Das B. Nrd1p identifies aberrant and natural exosomal target messages during the nuclear mRNA surveillance in Saccharomyces cerevisiae. Nucleic Acids Res. 2021 Nov 18;49(20):11512-11536. doi: 10.1093/nar/gkab930. PMID: 34664673; PMCID: PMC8599857.
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In-Silico analysis reveals lower transcription efficiency of C241T variant of SARS-CoV-2 with host replication factors MADP1 and hnRNP-1.

Informatics in medicine unlocked

Chaudhari A, Chaudhari M, Mahera S, Saiyed Z, Nathani NM, Shukla S, Patel D, Patel C, Joshi M, Joshi CG.
PMID: 34307830
Inform Med Unlocked. 2021;25:100670. doi: 10.1016/j.imu.2021.100670. Epub 2021 Jul 21.

Novel severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2) has claimed more than 3.3 million lives worldwide and still counting. As per the GISAID database, the genomics of SARS-CoV-2 has been extensively studied, with more than 500 genome submissions per day. Out...

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Chaudhari A, Chaudhari M, Mahera S, et al. In-Silico analysis reveals lower transcription efficiency of C241T variant of SARS-CoV-2 with host replication factors MADP1 and hnRNP-1. Inform Med Unlocked. 2021;25:100670doi: 10.1016/j.imu.2021.100670.
Chaudhari, A., Chaudhari, M., Mahera, S., Saiyed, Z., Nathani, N. M., Shukla, S., Patel, D., Patel, C., Joshi, M., & Joshi, C. G. (2021). In-Silico analysis reveals lower transcription efficiency of C241T variant of SARS-CoV-2 with host replication factors MADP1 and hnRNP-1. Informatics in medicine unlocked, 25100670. https://doi.org/10.1016/j.imu.2021.100670
Chaudhari, Armi, et al. "In-Silico analysis reveals lower transcription efficiency of C241T variant of SARS-CoV-2 with host replication factors MADP1 and hnRNP-1." Informatics in medicine unlocked vol. 25 (2021): 100670. doi: https://doi.org/10.1016/j.imu.2021.100670
Chaudhari A, Chaudhari M, Mahera S, Saiyed Z, Nathani NM, Shukla S, Patel D, Patel C, Joshi M, Joshi CG. In-Silico analysis reveals lower transcription efficiency of C241T variant of SARS-CoV-2 with host replication factors MADP1 and hnRNP-1. Inform Med Unlocked. 2021;25:100670. doi: 10.1016/j.imu.2021.100670. Epub 2021 Jul 21. PMID: 34307830; PMCID: PMC8294647.
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Strain differences in the extent of brain injury in mice after tetramethylenedisulfotetramine-induced status epilepticus.

Neurotoxicology

Calsbeek JJ, González EA, Boosalis CA, Zolkowska D, Bruun DA, Rowland DJ, Saito NH, Harvey DJ, Chaudhari AJ, Rogawski MA, Garbow JR, Lein PJ.
PMID: 34478772
Neurotoxicology. 2021 Dec;87:43-50. doi: 10.1016/j.neuro.2021.08.011. Epub 2021 Aug 31.

Acute intoxication with tetramethylenedisulfotetramine (TETS) can trigger status epilepticus (SE) in humans. Survivors often exhibit long-term neurological effects, including electrographic abnormalities and cognitive deficits, but the pathogenic mechanisms linking the acute toxic effects of TETS to chronic outcomes are...

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Calsbeek JJ, González EA, Boosalis CA, et al. Strain differences in the extent of brain injury in mice after tetramethylenedisulfotetramine-induced status epilepticus. Neurotoxicology. 2021;87:43-50doi: 10.1016/j.neuro.2021.08.011.
Calsbeek, J. J., González, E. A., Boosalis, C. A., Zolkowska, D., Bruun, D. A., Rowland, D. J., Saito, N. H., Harvey, D. J., Chaudhari, A. J., Rogawski, M. A., Garbow, J. R., & Lein, P. J. (2021). Strain differences in the extent of brain injury in mice after tetramethylenedisulfotetramine-induced status epilepticus. Neurotoxicology, 8743-50. https://doi.org/10.1016/j.neuro.2021.08.011
Calsbeek, Jonas J, et al. "Strain differences in the extent of brain injury in mice after tetramethylenedisulfotetramine-induced status epilepticus." Neurotoxicology vol. 87 (2021): 43-50. doi: https://doi.org/10.1016/j.neuro.2021.08.011
Calsbeek JJ, González EA, Boosalis CA, Zolkowska D, Bruun DA, Rowland DJ, Saito NH, Harvey DJ, Chaudhari AJ, Rogawski MA, Garbow JR, Lein PJ. Strain differences in the extent of brain injury in mice after tetramethylenedisulfotetramine-induced status epilepticus. Neurotoxicology. 2021 Dec;87:43-50. doi: 10.1016/j.neuro.2021.08.011. Epub 2021 Aug 31. PMID: 34478772; PMCID: PMC8595842.
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A dysfunctional TRPV4-GSK3β pathway prevents osteoarthritic chondrocytes from sensing changes in extracellular matrix viscoelasticity.

Nature biomedical engineering

Agarwal P, Lee HP, Smeriglio P, Grandi F, Goodman S, Chaudhuri O, Bhutani N.
PMID: 33707778
Nat Biomed Eng. 2021 Dec;5(12):1472-1484. doi: 10.1038/s41551-021-00691-3. Epub 2021 Mar 11.

Changes in the composition and viscoelasticity of the extracellular matrix in load-bearing cartilage influence the proliferation and phenotypes of chondrocytes, and are associated with osteoarthritis. However, the underlying molecular mechanism is unknown. Here we show that the viscoelasticity of...

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Agarwal P, Lee HP, Smeriglio P, et al. A dysfunctional TRPV4-GSK3β pathway prevents osteoarthritic chondrocytes from sensing changes in extracellular matrix viscoelasticity. Nat Biomed Eng. 2021;5(12):1472-1484doi: 10.1038/s41551-021-00691-3.
Agarwal, P., Lee, H. P., Smeriglio, P., Grandi, F., Goodman, S., Chaudhuri, O., & Bhutani, N. (2021). A dysfunctional TRPV4-GSK3β pathway prevents osteoarthritic chondrocytes from sensing changes in extracellular matrix viscoelasticity. Nature biomedical engineering, 5(12), 1472-1484. https://doi.org/10.1038/s41551-021-00691-3
Agarwal, Pranay, et al. "A dysfunctional TRPV4-GSK3β pathway prevents osteoarthritic chondrocytes from sensing changes in extracellular matrix viscoelasticity." Nature biomedical engineering vol. 5,12 (2021): 1472-1484. doi: https://doi.org/10.1038/s41551-021-00691-3
Agarwal P, Lee HP, Smeriglio P, Grandi F, Goodman S, Chaudhuri O, Bhutani N. A dysfunctional TRPV4-GSK3β pathway prevents osteoarthritic chondrocytes from sensing changes in extracellular matrix viscoelasticity. Nat Biomed Eng. 2021 Dec;5(12):1472-1484. doi: 10.1038/s41551-021-00691-3. Epub 2021 Mar 11. PMID: 33707778; PMCID: PMC8433267.
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Assessment of role of rhizosphere process in bioaccumulation of heavy metals in fine nutritive roots of riparian mangrove species in river Hooghly: Implications to global anthropogenic environmental changes.

Marine pollution bulletin

Ghosh S, Bakshi M, Mahanty S, Chaudhuri P.
PMID: 34847415
Mar Pollut Bull. 2021 Nov 27;174:113157. doi: 10.1016/j.marpolbul.2021.113157. Epub 2021 Nov 27.

Biota of coastal estuarine habitats of tropics and subtropics are extremely vulnerable. In the study, we have investigated the role of rhizosphere process in bio-accumulation of heavy metals in fine nutritive roots of riparian mangroves at eleven sampling locations...

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Ghosh S, Bakshi M, Mahanty S, et al. Assessment of role of rhizosphere process in bioaccumulation of heavy metals in fine nutritive roots of riparian mangrove species in river Hooghly: Implications to global anthropogenic environmental changes. Mar Pollut Bull. 2021;174:113157doi: 10.1016/j.marpolbul.2021.113157.
Ghosh, S., Bakshi, M., Mahanty, S., & Chaudhuri, P. (2021). Assessment of role of rhizosphere process in bioaccumulation of heavy metals in fine nutritive roots of riparian mangrove species in river Hooghly: Implications to global anthropogenic environmental changes. Marine pollution bulletin, 174113157. https://doi.org/10.1016/j.marpolbul.2021.113157
Ghosh, Somdeep, et al. "Assessment of role of rhizosphere process in bioaccumulation of heavy metals in fine nutritive roots of riparian mangrove species in river Hooghly: Implications to global anthropogenic environmental changes." Marine pollution bulletin vol. 174 (2021): 113157. doi: https://doi.org/10.1016/j.marpolbul.2021.113157
Ghosh S, Bakshi M, Mahanty S, Chaudhuri P. Assessment of role of rhizosphere process in bioaccumulation of heavy metals in fine nutritive roots of riparian mangrove species in river Hooghly: Implications to global anthropogenic environmental changes. Mar Pollut Bull. 2021 Nov 27;174:113157. doi: 10.1016/j.marpolbul.2021.113157. Epub 2021 Nov 27. PMID: 34847415.
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Guillain-Barre' Syndrome Following Scrub Typhus: A Rare Case.

Annals of Indian Academy of Neurology

Pandey S, Chaudhari D, Renjen PN, Ahmad K.
PMID: 34447024
Ann Indian Acad Neurol. 2021 May-Jun;24(3):451-452. doi: 10.4103/aian.AIAN_471_20. Epub 2021 Jan 25.

No abstract available.

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Pandey S, Chaudhari D, Renjen PN, et al. Guillain-Barre' Syndrome Following Scrub Typhus: A Rare Case. Ann Indian Acad Neurol. 2021;24(3):451-452doi: 10.4103/aian.AIAN_471_20.
Pandey, S., Chaudhari, D., Renjen, P. N., & Ahmad, K. (2021). Guillain-Barre' Syndrome Following Scrub Typhus: A Rare Case. Annals of Indian Academy of Neurology, 24(3), 451-452. https://doi.org/10.4103/aian.AIAN_471_20
Pandey, Shishir, et al. "Guillain-Barre' Syndrome Following Scrub Typhus: A Rare Case." Annals of Indian Academy of Neurology vol. 24,3 (2021): 451-452. doi: https://doi.org/10.4103/aian.AIAN_471_20
Pandey S, Chaudhari D, Renjen PN, Ahmad K. Guillain-Barre' Syndrome Following Scrub Typhus: A Rare Case. Ann Indian Acad Neurol. 2021 May-Jun;24(3):451-452. doi: 10.4103/aian.AIAN_471_20. Epub 2021 Jan 25. PMID: 34447024; PMCID: PMC8370181.
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Utility of fractional exhaled nitric oxide suppression as a prediction tool for progression to biologic therapy.

ERJ open research

Butler CA, McMichael AJ, Honeyford K, Wright L, Logan J, Holmes J, Busby J, Hanratty CE, Yang F, Smith SJ, Murray K, Chaudhuri R, Heaney LG.
PMID: 34549044
ERJ Open Res. 2021 Sep 20;7(3). doi: 10.1183/23120541.00273-2021. eCollection 2021 Jul.

RATIONALE: The utility of fractional exhaled nitric oxide (OBJECTIVES: We examined the utility of FeNOSuppT in prediction of progression to biologic agents or discharge from specialist care.METHODS: FeNOSuppT was measured at home using remote monitoring technology of inhaler use...

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Butler CA, McMichael AJ, Honeyford K, et al. Utility of fractional exhaled nitric oxide suppression as a prediction tool for progression to biologic therapy. ERJ Open Res. 2021;7(3)doi: 10.1183/23120541.00273-2021.
Butler, C. A., McMichael, A. J., Honeyford, K., Wright, L., Logan, J., Holmes, J., Busby, J., Hanratty, C. E., Yang, F., Smith, S. J., Murray, K., Chaudhuri, R., & Heaney, L. G. (2021). Utility of fractional exhaled nitric oxide suppression as a prediction tool for progression to biologic therapy. ERJ open research, 7(3), . https://doi.org/10.1183/23120541.00273-2021
Butler, Claire A, et al. "Utility of fractional exhaled nitric oxide suppression as a prediction tool for progression to biologic therapy." ERJ open research vol. 7,3 (2021). doi: https://doi.org/10.1183/23120541.00273-2021
Butler CA, McMichael AJ, Honeyford K, Wright L, Logan J, Holmes J, Busby J, Hanratty CE, Yang F, Smith SJ, Murray K, Chaudhuri R, Heaney LG. Utility of fractional exhaled nitric oxide suppression as a prediction tool for progression to biologic therapy. ERJ Open Res. 2021 Sep 20;7(3). doi: 10.1183/23120541.00273-2021. eCollection 2021 Jul. PMID: 34549044; PMCID: PMC8450452.
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Correlation of Serum Albumin Level to Lung Ultrasound Score and Its Role as Predictors of Outcome in Acute Respiratory Distress Syndrome Patients: A Prospective Observational Study.

Critical care research and practice

Chaudhuri S, Maddani SS, Rao S, Gauni S, Arjun NR, Todur P, Gupta N.
PMID: 34917416
Crit Care Res Pract. 2021 Dec 07;2021:4594790. doi: 10.1155/2021/4594790. eCollection 2021.

BACKGROUND: There is ambiguity in the literature regarding hypoalbuminemia as a cause of extravascular lung water and acute respiratory distress syndrome (ARDS) outcomes. The aim of the study was to determine if low serum albumin on admission leads to...

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Chaudhuri S, Maddani SS, Rao S, et al. Correlation of Serum Albumin Level to Lung Ultrasound Score and Its Role as Predictors of Outcome in Acute Respiratory Distress Syndrome Patients: A Prospective Observational Study. Crit Care Res Pract. 2021;2021:4594790doi: 10.1155/2021/4594790.
Chaudhuri, S., Maddani, S. S., Rao, S., Gauni, S., Arjun, N. R., Todur, P., & Gupta, N. (2021). Correlation of Serum Albumin Level to Lung Ultrasound Score and Its Role as Predictors of Outcome in Acute Respiratory Distress Syndrome Patients: A Prospective Observational Study. Critical care research and practice, 20214594790. https://doi.org/10.1155/2021/4594790
Chaudhuri, Souvik, et al. "Correlation of Serum Albumin Level to Lung Ultrasound Score and Its Role as Predictors of Outcome in Acute Respiratory Distress Syndrome Patients: A Prospective Observational Study." Critical care research and practice vol. 2021 (2021): 4594790. doi: https://doi.org/10.1155/2021/4594790
Chaudhuri S, Maddani SS, Rao S, Gauni S, Arjun NR, Todur P, Gupta N. Correlation of Serum Albumin Level to Lung Ultrasound Score and Its Role as Predictors of Outcome in Acute Respiratory Distress Syndrome Patients: A Prospective Observational Study. Crit Care Res Pract. 2021 Dec 07;2021:4594790. doi: 10.1155/2021/4594790. eCollection 2021. PMID: 34917416; PMCID: PMC8670905.
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Different soil salinity imparts clear alteration in rhizospheric bacterial community dynamics in rice and peanut.

Archives of microbiology

Islam MM, Bhattacharya R, Sarkar B, Maiti PK, Mahanty S, Chaudhuri P, Biswas SR, Mandal S.
PMID: 34927211
Arch Microbiol. 2021 Dec 20;204(1):36. doi: 10.1007/s00203-021-02695-8.

The rhizospheric microbiome is capable of changing the physio-chemical properties of its own micro-environment and found to be indispensable in the overall health of the hostplant. The interplay between the rhizospheric environment and the microbiota residing therein tune the...

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Islam MM, Bhattacharya R, Sarkar B, et al. Different soil salinity imparts clear alteration in rhizospheric bacterial community dynamics in rice and peanut. Arch Microbiol. 2021;204(1):36doi: 10.1007/s00203-021-02695-8.
Islam, M. M., Bhattacharya, R., Sarkar, B., Maiti, P. K., Mahanty, S., Chaudhuri, P., Biswas, S. R., & Mandal, S. (2021). Different soil salinity imparts clear alteration in rhizospheric bacterial community dynamics in rice and peanut. Archives of microbiology, 204(1), 36. https://doi.org/10.1007/s00203-021-02695-8
Islam, Md Majharul, et al. "Different soil salinity imparts clear alteration in rhizospheric bacterial community dynamics in rice and peanut." Archives of microbiology vol. 204,1 (2021): 36. doi: https://doi.org/10.1007/s00203-021-02695-8
Islam MM, Bhattacharya R, Sarkar B, Maiti PK, Mahanty S, Chaudhuri P, Biswas SR, Mandal S. Different soil salinity imparts clear alteration in rhizospheric bacterial community dynamics in rice and peanut. Arch Microbiol. 2021 Dec 20;204(1):36. doi: 10.1007/s00203-021-02695-8. PMID: 34927211.
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An opinion on the multiscale nature of Covid-19 type disease spread.

Current opinion in colloid & interface science

Chaudhuri S, Saha A, Basu S.
PMID: 33967585
Curr Opin Colloid Interface Sci. 2021 Aug;54:101462. doi: 10.1016/j.cocis.2021.101462. Epub 2021 May 01.

Recognizing the multiscale, interdisciplinary nature of the Covid-19 transmission dynamics, we discuss some recent developments concerning an attempt to construct a disease spread model from the flow physics of infectious droplets and aerosols and the frequency of contact between...

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Chaudhuri S, Saha A, Basu S. An opinion on the multiscale nature of Covid-19 type disease spread. Curr Opin Colloid Interface Sci. 2021;54:101462doi: 10.1016/j.cocis.2021.101462.
Chaudhuri, S., Saha, A., & Basu, S. (2021). An opinion on the multiscale nature of Covid-19 type disease spread. Current opinion in colloid & interface science, 54101462. https://doi.org/10.1016/j.cocis.2021.101462
Chaudhuri, Swetaprovo, et al. "An opinion on the multiscale nature of Covid-19 type disease spread." Current opinion in colloid & interface science vol. 54 (2021): 101462. doi: https://doi.org/10.1016/j.cocis.2021.101462
Chaudhuri S, Saha A, Basu S. An opinion on the multiscale nature of Covid-19 type disease spread. Curr Opin Colloid Interface Sci. 2021 Aug;54:101462. doi: 10.1016/j.cocis.2021.101462. Epub 2021 May 01. PMID: 33967585; PMCID: PMC8088079.
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The Impact of EndoAnchor Penetration on Endograft Structure: First Report of Explant Analysis.

EJVES vascular forum

Grandhomme J, Chakfe N, Chaudhuri A, Wyss TR, Chiesa R, Chakfe J, Dion D, Heim F, Lejay A.
PMID: 33937895
EJVES Vasc Forum. 2020 Aug 29;49:4-10. doi: 10.1016/j.ejvsvf.2020.08.002. eCollection 2020.

OBJECTIVE: The adjunctive use of Heli-FX EndoAnchors (EAs) in endovascular aneurysm repair has been proposed for the treatment or prevention of type Ia endoleaks. The aim of this study was to evaluate the impact of the penetration of EAs...

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Grandhomme J, Chakfe N, Chaudhuri A, et al. The Impact of EndoAnchor Penetration on Endograft Structure: First Report of Explant Analysis. EJVES Vasc Forum. 2020;49:4-10doi: 10.1016/j.ejvsvf.2020.08.002.
Grandhomme, J., Chakfe, N., Chaudhuri, A., Wyss, T. R., Chiesa, R., Chakfe, J., Dion, D., Heim, F., & Lejay, A. (2020). The Impact of EndoAnchor Penetration on Endograft Structure: First Report of Explant Analysis. EJVES vascular forum, 494-10. https://doi.org/10.1016/j.ejvsvf.2020.08.002
Grandhomme, Jonathan, et al. "The Impact of EndoAnchor Penetration on Endograft Structure: First Report of Explant Analysis." EJVES vascular forum vol. 49 (2020): 4-10. doi: https://doi.org/10.1016/j.ejvsvf.2020.08.002
Grandhomme J, Chakfe N, Chaudhuri A, Wyss TR, Chiesa R, Chakfe J, Dion D, Heim F, Lejay A. The Impact of EndoAnchor Penetration on Endograft Structure: First Report of Explant Analysis. EJVES Vasc Forum. 2020 Aug 29;49:4-10. doi: 10.1016/j.ejvsvf.2020.08.002. eCollection 2020. PMID: 33937895; PMCID: PMC8077235.
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Real-time prediction of intradialytic relative blood volume: a proof-of-concept for integrated cloud computing infrastructure.

BMC nephrology

Chaudhuri S, Han H, Monaghan C, Larkin J, Waguespack P, Shulman B, Kuang Z, Bellamkonda S, Brzozowski J, Hymes J, Black M, Kotanko P, Kooman JP, Maddux FW, Usvyat L.
PMID: 34372809
BMC Nephrol. 2021 Aug 09;22(1):274. doi: 10.1186/s12882-021-02481-0.

BACKGROUND: Inadequate refilling from extravascular compartments during hemodialysis can lead to intradialytic symptoms, such as hypotension, nausea, vomiting, and cramping/myalgia. Relative blood volume (RBV) plays an important role in adapting the ultrafiltration rate which in turn has a positive...

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Chaudhuri S, Han H, Monaghan C, et al. Real-time prediction of intradialytic relative blood volume: a proof-of-concept for integrated cloud computing infrastructure. BMC Nephrol. 2021;22(1):274doi: 10.1186/s12882-021-02481-0.
Chaudhuri, S., Han, H., Monaghan, C., Larkin, J., Waguespack, P., Shulman, B., Kuang, Z., Bellamkonda, S., Brzozowski, J., Hymes, J., Black, M., Kotanko, P., Kooman, J. P., Maddux, F. W., & Usvyat, L. (2021). Real-time prediction of intradialytic relative blood volume: a proof-of-concept for integrated cloud computing infrastructure. BMC nephrology, 22(1), 274. https://doi.org/10.1186/s12882-021-02481-0
Chaudhuri, Sheetal, et al. "Real-time prediction of intradialytic relative blood volume: a proof-of-concept for integrated cloud computing infrastructure." BMC nephrology vol. 22,1 (2021): 274. doi: https://doi.org/10.1186/s12882-021-02481-0
Chaudhuri S, Han H, Monaghan C, Larkin J, Waguespack P, Shulman B, Kuang Z, Bellamkonda S, Brzozowski J, Hymes J, Black M, Kotanko P, Kooman JP, Maddux FW, Usvyat L. Real-time prediction of intradialytic relative blood volume: a proof-of-concept for integrated cloud computing infrastructure. BMC Nephrol. 2021 Aug 09;22(1):274. doi: 10.1186/s12882-021-02481-0. PMID: 34372809; PMCID: PMC8351092.
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