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Comparative genomics of 11 complete chloroplast genomes of Senecioneae (Asteraceae) species: DNA barcodes and phylogenetics.

Botanical studies

Gichira AW, Avoga S, Li Z, Hu G, Wang Q, Chen J.
PMID: 31440866
Bot Stud. 2019 Aug 22;60(1):17. doi: 10.1186/s40529-019-0265-y.

BACKGROUND: Majority of the species within Senecioneae are classified in Senecio, making it the tribe's largest genus. Certain intergeneric relationships within the tribe are vaguely defined, with the genus Senecio being partly linked to this ambiguity. Infrageneric relationships within...

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Gichira AW, Avoga S, Li Z, et al. Comparative genomics of 11 complete chloroplast genomes of Senecioneae (Asteraceae) species: DNA barcodes and phylogenetics. Bot Stud. 2019;60(1):17doi: 10.1186/s40529-019-0265-y.
Gichira, A. W., Avoga, S., Li, Z., Hu, G., Wang, Q., & Chen, J. (2019). Comparative genomics of 11 complete chloroplast genomes of Senecioneae (Asteraceae) species: DNA barcodes and phylogenetics. Botanical studies, 60(1), 17. https://doi.org/10.1186/s40529-019-0265-y
Gichira, Andrew Wanyoike, et al. "Comparative genomics of 11 complete chloroplast genomes of Senecioneae (Asteraceae) species: DNA barcodes and phylogenetics." Botanical studies vol. 60,1 (2019): 17. doi: https://doi.org/10.1186/s40529-019-0265-y
Gichira AW, Avoga S, Li Z, Hu G, Wang Q, Chen J. Comparative genomics of 11 complete chloroplast genomes of Senecioneae (Asteraceae) species: DNA barcodes and phylogenetics. Bot Stud. 2019 Aug 22;60(1):17. doi: 10.1186/s40529-019-0265-y. PMID: 31440866; PMCID: PMC6706487.
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Anti-myeloma activity and molecular logic operation by Natural Killer cells in microfluidic droplets.

Sensors and actuators. B, Chemical

Sarkar S, McKenney S, Sabhachandani P, Adler J, Hu X, Stroopinksy D, Rosenblatt J, Avigan D, Konry T.
PMID: 31537955
Sens Actuators B Chem. 2019 Mar 01;282:580-589. doi: 10.1016/j.snb.2018.11.068. Epub 2018 Nov 17.

Immune-targeted therapies that activate effector lymphocytes such as Natural Killer (NK) cells are currently being investigated for the treatment of Multiple myeloma (MM), the second most common form of hematological cancer. However, individual NK cells are highly heterogeneous in...

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Sarkar S, McKenney S, Sabhachandani P, et al. Anti-myeloma activity and molecular logic operation by Natural Killer cells in microfluidic droplets. Sens Actuators B Chem. 2018;282:580-589doi: 10.1016/j.snb.2018.11.068.
Sarkar, S., McKenney, S., Sabhachandani, P., Adler, J., Hu, X., Stroopinksy, D., Rosenblatt, J., Avigan, D., & Konry, T. (2019). Anti-myeloma activity and molecular logic operation by Natural Killer cells in microfluidic droplets. Sensors and actuators. B, Chemical, 282580-589. https://doi.org/10.1016/j.snb.2018.11.068
Sarkar, Saheli, et al. "Anti-myeloma activity and molecular logic operation by Natural Killer cells in microfluidic droplets." Sensors and actuators. B, Chemical vol. 282 (2019): 580-589. doi: https://doi.org/10.1016/j.snb.2018.11.068
Sarkar S, McKenney S, Sabhachandani P, Adler J, Hu X, Stroopinksy D, Rosenblatt J, Avigan D, Konry T. Anti-myeloma activity and molecular logic operation by Natural Killer cells in microfluidic droplets. Sens Actuators B Chem. 2019 Mar 01;282:580-589. doi: 10.1016/j.snb.2018.11.068. Epub 2018 Nov 17. PMID: 31537955; PMCID: PMC6752214.
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Walking Psychotherapy As a Health Promotion Strategy to Improve Mental and Physical Health for Patients and Therapists: Clinical Open-Label Feasibility Trial.

Canadian journal of psychiatry. Revue canadienne de psychiatrie

Koziel N, Vigod S, Price J, Leung J, Hensel J.
PMID: 34424077
Can J Psychiatry. 2021 Aug 23;7067437211039194. doi: 10.1177/07067437211039194. Epub 2021 Aug 23.

BACKGROUND: Persons with mental illness are more at risk for sedentary behaviour and associated consequences. We assessed the feasibility of outdoor walking during psychotherapy sessions in an outpatient trauma therapy program to challenge sedentary behaviour.METHODS: In this pilot trial...

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Koziel N, Vigod S, Price J, et al. Walking Psychotherapy As a Health Promotion Strategy to Improve Mental and Physical Health for Patients and Therapists: Clinical Open-Label Feasibility Trial. Can J Psychiatry. 2021;7067437211039194doi: 10.1177/07067437211039194.
Koziel, N., Vigod, S., Price, J., Leung, J., & Hensel, J. (2021). Walking Psychotherapy As a Health Promotion Strategy to Improve Mental and Physical Health for Patients and Therapists: Clinical Open-Label Feasibility Trial. Canadian journal of psychiatry. Revue canadienne de psychiatrie, 7067437211039194. https://doi.org/10.1177/07067437211039194
Koziel, Nicole, et al. "Walking Psychotherapy As a Health Promotion Strategy to Improve Mental and Physical Health for Patients and Therapists: Clinical Open-Label Feasibility Trial." Canadian journal of psychiatry. Revue canadienne de psychiatrie vol. (2021): 7067437211039194. doi: https://doi.org/10.1177/07067437211039194
Koziel N, Vigod S, Price J, Leung J, Hensel J. Walking Psychotherapy As a Health Promotion Strategy to Improve Mental and Physical Health for Patients and Therapists: Clinical Open-Label Feasibility Trial. Can J Psychiatry. 2021 Aug 23;7067437211039194. doi: 10.1177/07067437211039194. Epub 2021 Aug 23. PMID: 34424077.
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Qualitative coronary artery calcification scores and risk of all cause, COPD and pneumonia hospital admission in a large CT lung cancer screening cohort.

Respiratory medicine

Gazourian L, Regis SM, Pagura EJ, Price LL, Gawlik M, Lamb C, Rieger-Christ KM, Thedinger WB, Sanayei AM, Long WP, Stefanescu CF, Rizzo GS, Patel AS, Come CE, Thomson CC, Pinto-Plata V, Steiling K, McKee AB, Wald C, McKee BJ, Liesching TN.
PMID: 34311389
Respir Med. 2021 Sep;186:106540. doi: 10.1016/j.rmed.2021.106540. Epub 2021 Jul 12.

BACKGROUND: Patients at high-risk for lung cancer and qualified for CT lung cancer screening (CTLS) are at risk for numerous cardio-pulmonary comorbidities. We sought to examine if qualitatively assessed coronary artery calcifications (CAC) on CTLS exams could identify patients...

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Gazourian L, Regis SM, Pagura EJ, et al. Qualitative coronary artery calcification scores and risk of all cause, COPD and pneumonia hospital admission in a large CT lung cancer screening cohort. Respir Med. 2021;186:106540doi: 10.1016/j.rmed.2021.106540.
Gazourian, L., Regis, S. M., Pagura, E. J., Price, L. L., Gawlik, M., Lamb, C., Rieger-Christ, K. M., Thedinger, W. B., Sanayei, A. M., Long, W. P., Stefanescu, C. F., Rizzo, G. S., Patel, A. S., Come, C. E., Thomson, C. C., Pinto-Plata, V., Steiling, K., McKee, A. B., Wald, C., McKee, B. J., & Liesching, T. N. (2021). Qualitative coronary artery calcification scores and risk of all cause, COPD and pneumonia hospital admission in a large CT lung cancer screening cohort. Respiratory medicine, 186106540. https://doi.org/10.1016/j.rmed.2021.106540
Gazourian, Lee, et al. "Qualitative coronary artery calcification scores and risk of all cause, COPD and pneumonia hospital admission in a large CT lung cancer screening cohort." Respiratory medicine vol. 186 (2021): 106540. doi: https://doi.org/10.1016/j.rmed.2021.106540
Gazourian L, Regis SM, Pagura EJ, Price LL, Gawlik M, Lamb C, Rieger-Christ KM, Thedinger WB, Sanayei AM, Long WP, Stefanescu CF, Rizzo GS, Patel AS, Come CE, Thomson CC, Pinto-Plata V, Steiling K, McKee AB, Wald C, McKee BJ, Liesching TN. Qualitative coronary artery calcification scores and risk of all cause, COPD and pneumonia hospital admission in a large CT lung cancer screening cohort. Respir Med. 2021 Sep;186:106540. doi: 10.1016/j.rmed.2021.106540. Epub 2021 Jul 12. PMID: 34311389; PMCID: PMC8579718.
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Acute gastric volvulus: A rare case report and literature review.

Annals of medicine and surgery (2012)

Albloushi D, Quttaineh D, Alsafran S, Alyatama K, Alfawaz AA, Alsulaimy M, Saber S, Abdel-Rahman AS.
PMID: 34691417
Ann Med Surg (Lond). 2021 Sep 13;70:102857. doi: 10.1016/j.amsu.2021.102857. eCollection 2021 Oct.

INTRODUCTION AND IMPORTANCE: Gastric volvulus is the abnormal gastric rotation upon itself. It carries a considerable risk for gastric strangulation which may lead to gangrene and perforation, which can be fatal. It commonly presents with non-specific and vague abdominal...

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Albloushi D, Quttaineh D, Alsafran S, et al. Acute gastric volvulus: A rare case report and literature review. Ann Med Surg (Lond). 2021;70:102857doi: 10.1016/j.amsu.2021.102857.
Albloushi, D., Quttaineh, D., Alsafran, S., Alyatama, K., Alfawaz, A. A., Alsulaimy, M., Saber, S., & Abdel-Rahman, A. S. (2021). Acute gastric volvulus: A rare case report and literature review. Annals of medicine and surgery (2012), 70102857. https://doi.org/10.1016/j.amsu.2021.102857
Albloushi, Dalia, et al. "Acute gastric volvulus: A rare case report and literature review." Annals of medicine and surgery (2012) vol. 70 (2021): 102857. doi: https://doi.org/10.1016/j.amsu.2021.102857
Albloushi D, Quttaineh D, Alsafran S, Alyatama K, Alfawaz AA, Alsulaimy M, Saber S, Abdel-Rahman AS. Acute gastric volvulus: A rare case report and literature review. Ann Med Surg (Lond). 2021 Sep 13;70:102857. doi: 10.1016/j.amsu.2021.102857. eCollection 2021 Oct. PMID: 34691417; PMCID: PMC8519751.
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Combining a CAR and a chimeric costimulatory receptor enhances T cell sensitivity to low antigen density and promotes persistence.

Science translational medicine

Katsarou A, Sjöstrand M, Naik J, Mansilla-Soto J, Kefala D, Kladis G, Nianias A, Ruiter R, Poels R, Sarkar I, Patankar YR, Merino E, Reijmers RM, Frerichs KA, Yuan H, de Bruijn J, Stroopinsky D, Avigan D, van de Donk NWCJ, Zweegman S, Mutis T, Sadelain M, Groen RWJ, Themeli M.
PMID: 34878825
Sci Transl Med. 2021 Dec 08;13(623):eabh1962. doi: 10.1126/scitranslmed.abh1962. Epub 2021 Dec 08.

[Figure: see text].

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Katsarou A, Sjöstrand M, Naik J, et al. Combining a CAR and a chimeric costimulatory receptor enhances T cell sensitivity to low antigen density and promotes persistence. Sci Transl Med. 2021;13(623):eabh1962doi: 10.1126/scitranslmed.abh1962.
Katsarou, A., Sjöstrand, M., Naik, J., Mansilla-Soto, J., Kefala, D., Kladis, G., Nianias, A., Ruiter, R., Poels, R., Sarkar, I., Patankar, Y. R., Merino, E., Reijmers, R. M., Frerichs, K. A., Yuan, H., de Bruijn, J., Stroopinsky, D., Avigan, D., van de Donk, N. W. C. J., Zweegman, S., Mutis, T., Sadelain, M., Groen, R. W. J., & Themeli, M. (2021). Combining a CAR and a chimeric costimulatory receptor enhances T cell sensitivity to low antigen density and promotes persistence. Science translational medicine, 13(623), eabh1962. https://doi.org/10.1126/scitranslmed.abh1962
Katsarou, Afroditi, et al. "Combining a CAR and a chimeric costimulatory receptor enhances T cell sensitivity to low antigen density and promotes persistence." Science translational medicine vol. 13,623 (2021): eabh1962. doi: https://doi.org/10.1126/scitranslmed.abh1962
Katsarou A, Sjöstrand M, Naik J, Mansilla-Soto J, Kefala D, Kladis G, Nianias A, Ruiter R, Poels R, Sarkar I, Patankar YR, Merino E, Reijmers RM, Frerichs KA, Yuan H, de Bruijn J, Stroopinsky D, Avigan D, van de Donk NWCJ, Zweegman S, Mutis T, Sadelain M, Groen RWJ, Themeli M. Combining a CAR and a chimeric costimulatory receptor enhances T cell sensitivity to low antigen density and promotes persistence. Sci Transl Med. 2021 Dec 08;13(623):eabh1962. doi: 10.1126/scitranslmed.abh1962. Epub 2021 Dec 08. PMID: 34878825.
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Simulating Capillary Gas Chromatographic Separations including Thermal Gradient Conditions.

Analytical chemistry

Tolley HD, Avila S, Iverson BD, Foster AR, Hawkins AR, Tolley SE, Lee ML.
PMID: 33405883
Anal Chem. 2021 Feb 02;93(4):2291-2298. doi: 10.1021/acs.analchem.0c04160. Epub 2021 Jan 06.

This article presents a method of simulating molecular transport in capillary gas chromatography (GC) applicable to isothermal, temperature-programmed, and thermal gradient conditions. The approach accounts for parameter differences that can occur across an analyte band including pressure, mobile phase...

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Tolley HD, Avila S, Iverson BD, et al. Simulating Capillary Gas Chromatographic Separations including Thermal Gradient Conditions. Anal Chem. 2021;93(4):2291-2298doi: 10.1021/acs.analchem.0c04160.
Tolley, H. D., Avila, S., Iverson, B. D., Foster, A. R., Hawkins, A. R., Tolley, S. E., & Lee, M. L. (2021). Simulating Capillary Gas Chromatographic Separations including Thermal Gradient Conditions. Analytical chemistry, 93(4), 2291-2298. https://doi.org/10.1021/acs.analchem.0c04160
Tolley, H Dennis, et al. "Simulating Capillary Gas Chromatographic Separations including Thermal Gradient Conditions." Analytical chemistry vol. 93,4 (2021): 2291-2298. doi: https://doi.org/10.1021/acs.analchem.0c04160
Tolley HD, Avila S, Iverson BD, Foster AR, Hawkins AR, Tolley SE, Lee ML. Simulating Capillary Gas Chromatographic Separations including Thermal Gradient Conditions. Anal Chem. 2021 Feb 02;93(4):2291-2298. doi: 10.1021/acs.analchem.0c04160. Epub 2021 Jan 06. PMID: 33405883.
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Beta-band modulation in the human hippocampus during a conflict response task.

Journal of neural engineering

Chen KH, Gogia AS, Tang AM, Del Campo-Vera RM, Sebastian R, Nune G, Wong J, Liu CY, Kellis S, Lee B.
PMID: 33059331
J Neural Eng. 2020 Nov 11;17(6). doi: 10.1088/1741-2552/abc1b8.

No abstract available.

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Chen KH, Gogia AS, Tang AM, et al. Beta-band modulation in the human hippocampus during a conflict response task. J Neural Eng. 2020;17(6)doi: 10.1088/1741-2552/abc1b8.
Chen, K. H., Gogia, A. S., Tang, A. M., Del Campo-Vera, R. M., Sebastian, R., Nune, G., Wong, J., Liu, C. Y., Kellis, S., & Lee, B. (2020). Beta-band modulation in the human hippocampus during a conflict response task. Journal of neural engineering, 17(6), . https://doi.org/10.1088/1741-2552/abc1b8
Chen, Kuang-Hsuan, et al. "Beta-band modulation in the human hippocampus during a conflict response task." Journal of neural engineering vol. 17,6 (2020). doi: https://doi.org/10.1088/1741-2552/abc1b8
Chen KH, Gogia AS, Tang AM, Del Campo-Vera RM, Sebastian R, Nune G, Wong J, Liu CY, Kellis S, Lee B. Beta-band modulation in the human hippocampus during a conflict response task. J Neural Eng. 2020 Nov 11;17(6). doi: 10.1088/1741-2552/abc1b8. PMID: 33059331.
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Editorial: Perspectives from the front lines of COVID-19: New York City ophthalmology resident narratives.

Current opinion in ophthalmology

Rosenberg JB, Nair A, Jin S, Avila S, Polla DJ, Miller CG, Chen M, Sharfi D, Lidder A, Sobol EK, Adams C, Khundkar T, Engelhard S, Chen RWS, Reddy HS.
PMID: 32694269
Curr Opin Ophthalmol. 2020 Sep;31(5):386-388. doi: 10.1097/ICU.0000000000000686.

No abstract available.

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Rosenberg JB, Nair A, Jin S, et al. Editorial: Perspectives from the front lines of COVID-19: New York City ophthalmology resident narratives. Curr Opin Ophthalmol. 2020;31(5):386-388doi: 10.1097/ICU.0000000000000686.
Rosenberg, J. B., Nair, A., Jin, S., Avila, S., Polla, D. J., Miller, C. G., Chen, M., Sharfi, D., Lidder, A., Sobol, E. K., Adams, C., Khundkar, T., Engelhard, S., Chen, R. W. S., & Reddy, H. S. (2020). Editorial: Perspectives from the front lines of COVID-19: New York City ophthalmology resident narratives. Current opinion in ophthalmology, 31(5), 386-388. https://doi.org/10.1097/ICU.0000000000000686
Rosenberg, Jamie B, et al. "Editorial: Perspectives from the front lines of COVID-19: New York City ophthalmology resident narratives." Current opinion in ophthalmology vol. 31,5 (2020): 386-388. doi: https://doi.org/10.1097/ICU.0000000000000686
Rosenberg JB, Nair A, Jin S, Avila S, Polla DJ, Miller CG, Chen M, Sharfi D, Lidder A, Sobol EK, Adams C, Khundkar T, Engelhard S, Chen RWS, Reddy HS. Editorial: Perspectives from the front lines of COVID-19: New York City ophthalmology resident narratives. Curr Opin Ophthalmol. 2020 Sep;31(5):386-388. doi: 10.1097/ICU.0000000000000686. PMID: 32694269.
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Computed Tomography-Based Biomarker Outcomes in a Prospective Trial of Preoperative FOLFIRINOX and Chemoradiation for Borderline Resectable Pancreatic Cancer.

JCO precision oncology

Koay EJ, Katz MHG, Wang H, Wang X, Prakash L, Javle M, Shroff R, Fogelman D, Avila S, Zaid M, Elganainy D, Lee Y, Crane CH, Krishnan S, Das P, Fleming JB, Lee JE, Tamm EP, Bhosale P, Lee JH, Weston B, Maitra A, Wolff RA, Varadhachary GR.
PMID: 32914036
JCO Precis Oncol. 2019 Aug 23;3. doi: 10.1200/PO.19.00001. eCollection 2019.

PURPOSE: Effective preoperative regimens and biomarkers for pancreatic ductal adenocarcinoma (PDAC) are lacking. We prospectively evaluated fluorouracil, leucovorin, irinotecan, and oxaliplatin (FOLFIRINOX)-based treatment and imaging-based biomarkers for borderline resectable PDAC.METHODS: Eligible patients had treatment-naïve, histology-confirmed PDAC and one or...

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Koay EJ, Katz MHG, Wang H, et al. Computed Tomography-Based Biomarker Outcomes in a Prospective Trial of Preoperative FOLFIRINOX and Chemoradiation for Borderline Resectable Pancreatic Cancer. JCO Precis Oncol. 2019;3doi: 10.1200/PO.19.00001.
Koay, E. J., Katz, M. H. G., Wang, H., Wang, X., Prakash, L., Javle, M., Shroff, R., Fogelman, D., Avila, S., Zaid, M., Elganainy, D., Lee, Y., Crane, C. H., Krishnan, S., Das, P., Fleming, J. B., Lee, J. E., Tamm, E. P., Bhosale, P., Lee, J. H., Weston, B., Maitra, A., Wolff, R. A., & Varadhachary, G. R. (2019). Computed Tomography-Based Biomarker Outcomes in a Prospective Trial of Preoperative FOLFIRINOX and Chemoradiation for Borderline Resectable Pancreatic Cancer. JCO precision oncology, 3. https://doi.org/10.1200/PO.19.00001
Koay, Eugene J, et al. "Computed Tomography-Based Biomarker Outcomes in a Prospective Trial of Preoperative FOLFIRINOX and Chemoradiation for Borderline Resectable Pancreatic Cancer." JCO precision oncology vol. 3 (2019). doi: https://doi.org/10.1200/PO.19.00001
Koay EJ, Katz MHG, Wang H, Wang X, Prakash L, Javle M, Shroff R, Fogelman D, Avila S, Zaid M, Elganainy D, Lee Y, Crane CH, Krishnan S, Das P, Fleming JB, Lee JE, Tamm EP, Bhosale P, Lee JH, Weston B, Maitra A, Wolff RA, Varadhachary GR. Computed Tomography-Based Biomarker Outcomes in a Prospective Trial of Preoperative FOLFIRINOX and Chemoradiation for Borderline Resectable Pancreatic Cancer. JCO Precis Oncol. 2019 Aug 23;3. doi: 10.1200/PO.19.00001. eCollection 2019. PMID: 32914036; PMCID: PMC7446521.
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Patient decision aids for antidepressant use in pregnancy: a pilot randomised controlled trial in the UK.

BJGP open

Khalifeh H, Molyneaux E, Brauer R, Vigod S, Howard LM.
PMID: 31822489
BJGP Open. 2019 Dec 10; doi: 10.3399/bjgpopen19X101666. Epub 2019 Dec 10.

BACKGROUND: Decision-making regarding antidepressant use in pregnancy is challenging, given the uncertain evidence base on the benefits and risks for women and their children. Patient decision aids (PDAs) can improve shared decision-making for complex health decisions but no evidence-based...

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Khalifeh H, Molyneaux E, Brauer R, et al. Patient decision aids for antidepressant use in pregnancy: a pilot randomised controlled trial in the UK. BJGP Open. 2019;doi: 10.3399/bjgpopen19X101666.
Khalifeh, H., Molyneaux, E., Brauer, R., Vigod, S., & Howard, L. M. (2019). Patient decision aids for antidepressant use in pregnancy: a pilot randomised controlled trial in the UK. BJGP open, . https://doi.org/10.3399/bjgpopen19X101666
Khalifeh, Hind, et al. "Patient decision aids for antidepressant use in pregnancy: a pilot randomised controlled trial in the UK." BJGP open vol. (2019). doi: https://doi.org/10.3399/bjgpopen19X101666
Khalifeh H, Molyneaux E, Brauer R, Vigod S, Howard LM. Patient decision aids for antidepressant use in pregnancy: a pilot randomised controlled trial in the UK. BJGP Open. 2019 Dec 10; doi: 10.3399/bjgpopen19X101666. Epub 2019 Dec 10. PMID: 31822489; PMCID: PMC6995861.
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The complete chloroplast genome of .

Mitochondrial DNA. Part B, Resources

Nzei JM, Saina JK, Mwanzia VM, Avoga S, Pan C.
PMID: 33366666
Mitochondrial DNA B Resour. 2020 Jan 14;5(1):603-604. doi: 10.1080/23802359.2019.1710603.

No abstract available.

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Nzei JM, Saina JK, Mwanzia VM, et al. The complete chloroplast genome of . Mitochondrial DNA B Resour. 2020;5(1):603-604doi: 10.1080/23802359.2019.1710603.
Nzei, J. M., Saina, J. K., Mwanzia, V. M., Avoga, S., & Pan, C. (2020). The complete chloroplast genome of . Mitochondrial DNA. Part B, Resources, 5(1), 603-604. https://doi.org/10.1080/23802359.2019.1710603
Nzei, John M, et al. "The complete chloroplast genome of ." Mitochondrial DNA. Part B, Resources vol. 5,1 (2020): 603-604. doi: https://doi.org/10.1080/23802359.2019.1710603
Nzei JM, Saina JK, Mwanzia VM, Avoga S, Pan C. The complete chloroplast genome of . Mitochondrial DNA B Resour. 2020 Jan 14;5(1):603-604. doi: 10.1080/23802359.2019.1710603. PMID: 33366666; PMCID: PMC7748779.
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