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SMAR1 binds to T(C/G) repeat and inhibits tumor progression by regulating miR-371-373 cluster.

Scientific reports

Mathai J, Mittal SP, Alam A, Ranade P, Mogare D, Patel S, Saxena S, Ghorai S, Kulkarni AP, Chattopadhyay S.
PMID: 27671416
Sci Rep. 2016 Sep 27;6:33779. doi: 10.1038/srep33779.

Chromatin architecture and dynamics are regulated by various histone and non-histone proteins. The matrix attachment region binding proteins (MARBPs) play a central role in chromatin organization and function through numerous regulatory proteins. In the present study, we demonstrate that...

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Mathai J, Mittal SP, Alam A, et al. SMAR1 binds to T(C/G) repeat and inhibits tumor progression by regulating miR-371-373 cluster. Sci Rep. 2016;6:33779doi: 10.1038/srep33779.
Mathai, J., Mittal, S. P., Alam, A., Ranade, P., Mogare, D., Patel, S., Saxena, S., Ghorai, S., Kulkarni, A. P., & Chattopadhyay, S. (2016). SMAR1 binds to T(C/G) repeat and inhibits tumor progression by regulating miR-371-373 cluster. Scientific reports, 633779. https://doi.org/10.1038/srep33779
Mathai, Jinumary, et al. "SMAR1 binds to T(C/G) repeat and inhibits tumor progression by regulating miR-371-373 cluster." Scientific reports vol. 6 (2016): 33779. doi: https://doi.org/10.1038/srep33779
Mathai J, Mittal SP, Alam A, Ranade P, Mogare D, Patel S, Saxena S, Ghorai S, Kulkarni AP, Chattopadhyay S. SMAR1 binds to T(C/G) repeat and inhibits tumor progression by regulating miR-371-373 cluster. Sci Rep. 2016 Sep 27;6:33779. doi: 10.1038/srep33779. PMID: 27671416; PMCID: PMC5037395.
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Radially and azimuthally polarized nanosecond Yb-doped fiber MOPA system incorporating temporal shaping.

Optics letters

Lin D, Baktash N, Berendt M, Beresna M, Kazansky PG, Clarkson WA, Alam SU, Richardson DJ.
PMID: 28454149
Opt Lett. 2017 May 01;42(9):1740-1743. doi: 10.1364/OL.42.001740.

We report an Yb-doped fiber master-oscillator power-amplifier (MOPA) system with the capability of selectively generating doughnut-shaped radially and azimuthally polarized beams with user-defined temporal pulse shapes. The desired output polarization was generated with the aid of a nanograting spatially...

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Lin D, Baktash N, Berendt M, et al. Radially and azimuthally polarized nanosecond Yb-doped fiber MOPA system incorporating temporal shaping. Opt Lett. 2017;42(9):1740-1743doi: 10.1364/OL.42.001740.
Lin, D., Baktash, N., Berendt, M., Beresna, M., Kazansky, P. G., Clarkson, W. A., Alam, S. U., & Richardson, D. J. (2017). Radially and azimuthally polarized nanosecond Yb-doped fiber MOPA system incorporating temporal shaping. Optics letters, 42(9), 1740-1743. https://doi.org/10.1364/OL.42.001740
Lin, D, et al. "Radially and azimuthally polarized nanosecond Yb-doped fiber MOPA system incorporating temporal shaping." Optics letters vol. 42,9 (2017): 1740-1743. doi: https://doi.org/10.1364/OL.42.001740
Lin D, Baktash N, Berendt M, Beresna M, Kazansky PG, Clarkson WA, Alam SU, Richardson DJ. Radially and azimuthally polarized nanosecond Yb-doped fiber MOPA system incorporating temporal shaping. Opt Lett. 2017 May 01;42(9):1740-1743. doi: 10.1364/OL.42.001740. PMID: 28454149.
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Evaluation of response from axitinib per Response Evaluation Criteria in Solid Tumors versus Choi criteria in previously treated patients with metastatic renal cell carcinoma.

OncoTargets and therapy

Karakiewicz PI, Nott L, Joshi A, Kannourakis G, Tarazi J, Alam M.
PMID: 27274281
Onco Targets Ther. 2016 May 12;9:2855-63. doi: 10.2147/OTT.S102578. eCollection 2016.

BACKGROUND: Axitinib, a selective and potent tyrosine kinase inhibitor of vascular endothelial growth factor receptors, was available to patients from Canada and Australia, prior to regulatory approval of axitinib in these countries, for treatment of clear-cell metastatic renal cell...

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Karakiewicz PI, Nott L, Joshi A, et al. Evaluation of response from axitinib per Response Evaluation Criteria in Solid Tumors versus Choi criteria in previously treated patients with metastatic renal cell carcinoma. Onco Targets Ther. 2016;9:2855-63doi: 10.2147/OTT.S102578.
Karakiewicz, P. I., Nott, L., Joshi, A., Kannourakis, G., Tarazi, J., & Alam, M. (2016). Evaluation of response from axitinib per Response Evaluation Criteria in Solid Tumors versus Choi criteria in previously treated patients with metastatic renal cell carcinoma. OncoTargets and therapy, 92855-63. https://doi.org/10.2147/OTT.S102578
Karakiewicz, Pierre I, et al. "Evaluation of response from axitinib per Response Evaluation Criteria in Solid Tumors versus Choi criteria in previously treated patients with metastatic renal cell carcinoma." OncoTargets and therapy vol. 9 (2016): 2855-63. doi: https://doi.org/10.2147/OTT.S102578
Karakiewicz PI, Nott L, Joshi A, Kannourakis G, Tarazi J, Alam M. Evaluation of response from axitinib per Response Evaluation Criteria in Solid Tumors versus Choi criteria in previously treated patients with metastatic renal cell carcinoma. Onco Targets Ther. 2016 May 12;9:2855-63. doi: 10.2147/OTT.S102578. eCollection 2016. PMID: 27274281; PMCID: PMC4869634.
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Corrigendum: Functional transformations of bile acid transporters induced by high-affinity macromolecules.

Scientific reports

Al-Hilal TA, Chung SW, Alam F, Park J, Lee KE, Jeon H, Kim K, Kwon IC, Kim IS, Kim SY, Byun Y.
PMID: 26244565
Sci Rep. 2015 Aug 05;5:9407. doi: 10.1038/srep09407.

No abstract available.

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Al-Hilal TA, Chung SW, Alam F, et al. Corrigendum: Functional transformations of bile acid transporters induced by high-affinity macromolecules. Sci Rep. 2015;5:9407doi: 10.1038/srep09407.
Al-Hilal, T. A., Chung, S. W., Alam, F., Park, J., Lee, K. E., Jeon, H., Kim, K., Kwon, I. C., Kim, I. S., Kim, S. Y., & Byun, Y. (2015). Corrigendum: Functional transformations of bile acid transporters induced by high-affinity macromolecules. Scientific reports, 59407. https://doi.org/10.1038/srep09407
Al-Hilal, Taslim A, et al. "Corrigendum: Functional transformations of bile acid transporters induced by high-affinity macromolecules." Scientific reports vol. 5 (2015): 9407. doi: https://doi.org/10.1038/srep09407
Al-Hilal TA, Chung SW, Alam F, Park J, Lee KE, Jeon H, Kim K, Kwon IC, Kim IS, Kim SY, Byun Y. Corrigendum: Functional transformations of bile acid transporters induced by high-affinity macromolecules. Sci Rep. 2015 Aug 05;5:9407. doi: 10.1038/srep09407. PMID: 26244565; PMCID: PMC4525783.
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Brewing for Students: An Inquiry-Based Microbiology Lab.

Journal of microbiology & biology education

Sato BK, Alam U, Dacanay SJ, Lee AK, Shaffer JF.
PMID: 26753030
J Microbiol Biol Educ. 2015 Dec 01;16(2):223-9. doi: 10.1128/jmbe.v16i2.914. eCollection 2015 Dec.

In an effort to improve and assess student learning, there has been a push to increase the incorporation of discovery-driven modules and those that contain real-world relevance into laboratory curricula. To further this effort, we have developed, implemented, and...

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Sato BK, Alam U, Dacanay SJ, et al. Brewing for Students: An Inquiry-Based Microbiology Lab. J Microbiol Biol Educ. 2015;16(2):223-9doi: 10.1128/jmbe.v16i2.914.
Sato, B. K., Alam, U., Dacanay, S. J., Lee, A. K., & Shaffer, J. F. (2015). Brewing for Students: An Inquiry-Based Microbiology Lab. Journal of microbiology & biology education, 16(2), 223-9. https://doi.org/10.1128/jmbe.v16i2.914
Sato, Brian K, et al. "Brewing for Students: An Inquiry-Based Microbiology Lab." Journal of microbiology & biology education vol. 16,2 (2015): 223-9. doi: https://doi.org/10.1128/jmbe.v16i2.914
Sato BK, Alam U, Dacanay SJ, Lee AK, Shaffer JF. Brewing for Students: An Inquiry-Based Microbiology Lab. J Microbiol Biol Educ. 2015 Dec 01;16(2):223-9. doi: 10.1128/jmbe.v16i2.914. eCollection 2015 Dec. PMID: 26753030; PMCID: PMC4690564.
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Semistochastic Heat-Bath Configuration Interaction Method: Selected Configuration Interaction with Semistochastic Perturbation Theory.

Journal of chemical theory and computation

Sharma S, Holmes AA, Jeanmairet G, Alavi A, Umrigar CJ.
PMID: 28263594
J Chem Theory Comput. 2017 Apr 11;13(4):1595-1604. doi: 10.1021/acs.jctc.6b01028. Epub 2017 Mar 23.

We extend the recently proposed heat-bath configuration interaction (HCI) method [Holmes, Tubman, Umrigar, J. Chem. Theory Comput. 2016, 12, 3674], by introducing a semistochastic algorithm for performing multireference Epstein-Nesbet perturbation theory, in order to completely eliminate the severe memory...

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Sharma S, Holmes AA, Jeanmairet G, et al. Semistochastic Heat-Bath Configuration Interaction Method: Selected Configuration Interaction with Semistochastic Perturbation Theory. J Chem Theory Comput. 2017;13(4):1595-1604doi: 10.1021/acs.jctc.6b01028.
Sharma, S., Holmes, A. A., Jeanmairet, G., Alavi, A., & Umrigar, C. J. (2017). Semistochastic Heat-Bath Configuration Interaction Method: Selected Configuration Interaction with Semistochastic Perturbation Theory. Journal of chemical theory and computation, 13(4), 1595-1604. https://doi.org/10.1021/acs.jctc.6b01028
Sharma, Sandeep, et al. "Semistochastic Heat-Bath Configuration Interaction Method: Selected Configuration Interaction with Semistochastic Perturbation Theory." Journal of chemical theory and computation vol. 13,4 (2017): 1595-1604. doi: https://doi.org/10.1021/acs.jctc.6b01028
Sharma S, Holmes AA, Jeanmairet G, Alavi A, Umrigar CJ. Semistochastic Heat-Bath Configuration Interaction Method: Selected Configuration Interaction with Semistochastic Perturbation Theory. J Chem Theory Comput. 2017 Apr 11;13(4):1595-1604. doi: 10.1021/acs.jctc.6b01028. Epub 2017 Mar 23. PMID: 28263594.
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Impact of killer immunoglobulin-like receptor-human leukocyte antigens ligand incompatibility among renal transplantation.

Indian journal of nephrology

Alam S, Rangaswamy D, Prakash S, Sharma RK, Khan MI, Sonawane A, Agrawal S.
PMID: 25684869
Indian J Nephrol. 2015 Jan-Feb;25(1):27-33. doi: 10.4103/0971-4065.134655.

Killer immunoglobulin-like receptor (KIR) gene shows a high degree of polymorphism. Natural killer cell receptor gets activated once they bind to self-human leukocyte antigens (HLAs) with specific ligand. KIR gene and HLA ligand incompatibility due to the presence/absence of...

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Alam S, Rangaswamy D, Prakash S, et al. Impact of killer immunoglobulin-like receptor-human leukocyte antigens ligand incompatibility among renal transplantation. Indian J Nephrol. 2015;25(1):27-33doi: 10.4103/0971-4065.134655.
Alam, S., Rangaswamy, D., Prakash, S., Sharma, R. K., Khan, M. I., Sonawane, A., & Agrawal, S. (2015). Impact of killer immunoglobulin-like receptor-human leukocyte antigens ligand incompatibility among renal transplantation. Indian journal of nephrology, 25(1), 27-33. https://doi.org/10.4103/0971-4065.134655
Alam, S, et al. "Impact of killer immunoglobulin-like receptor-human leukocyte antigens ligand incompatibility among renal transplantation." Indian journal of nephrology vol. 25,1 (2015): 27-33. doi: https://doi.org/10.4103/0971-4065.134655
Alam S, Rangaswamy D, Prakash S, Sharma RK, Khan MI, Sonawane A, Agrawal S. Impact of killer immunoglobulin-like receptor-human leukocyte antigens ligand incompatibility among renal transplantation. Indian J Nephrol. 2015 Jan-Feb;25(1):27-33. doi: 10.4103/0971-4065.134655. PMID: 25684869; PMCID: PMC4323909.
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Using Voice Coils to Actuate Modular Soft Robots: Wormbot, an Example.

Soft robotics

Nemitz MP, Mihaylov P, Barraclough TW, Ross D, Stokes AA.
PMID: 28078195
Soft Robot. 2016 Dec 01;3(4):198-204. doi: 10.1089/soro.2016.0009.

In this study, we present a modular worm-like robot, which utilizes voice coils as a new paradigm in soft robot actuation. Drive electronics are incorporated into the actuators, providing a significant improvement in self-sufficiency when compared with existing soft...

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Nemitz MP, Mihaylov P, Barraclough TW, et al. Using Voice Coils to Actuate Modular Soft Robots: Wormbot, an Example. Soft Robot. 2016;3(4):198-204doi: 10.1089/soro.2016.0009.
Nemitz, M. P., Mihaylov, P., Barraclough, T. W., Ross, D., & Stokes, A. A. (2016). Using Voice Coils to Actuate Modular Soft Robots: Wormbot, an Example. Soft robotics, 3(4), 198-204. https://doi.org/10.1089/soro.2016.0009
Nemitz, Markus P, et al. "Using Voice Coils to Actuate Modular Soft Robots: Wormbot, an Example." Soft robotics vol. 3,4 (2016): 198-204. doi: https://doi.org/10.1089/soro.2016.0009
Nemitz MP, Mihaylov P, Barraclough TW, Ross D, Stokes AA. Using Voice Coils to Actuate Modular Soft Robots: Wormbot, an Example. Soft Robot. 2016 Dec 01;3(4):198-204. doi: 10.1089/soro.2016.0009. PMID: 28078195; PMCID: PMC5180079.
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Excited states using semistochastic heat-bath configuration interaction.

The Journal of chemical physics

Holmes AA, Umrigar CJ, Sharma S.
PMID: 29096501
J Chem Phys. 2017 Oct 28;147(16):164111. doi: 10.1063/1.4998614.

We extend our recently developed heat-bath configuration interaction (HCI) algorithm, and our semistochastic algorithm for performing multireference perturbation theory, to calculate excited-state wavefunctions and energies. We employ time-reversal symmetry, which reduces the memory requirements by more than a factor...

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Holmes AA, Umrigar CJ, Sharma S. Excited states using semistochastic heat-bath configuration interaction. J Chem Phys. 2017;147(16):164111doi: 10.1063/1.4998614.
Holmes, A. A., Umrigar, C. J., & Sharma, S. (2017). Excited states using semistochastic heat-bath configuration interaction. The Journal of chemical physics, 147(16), 164111. https://doi.org/10.1063/1.4998614
Holmes, Adam A, et al. "Excited states using semistochastic heat-bath configuration interaction." The Journal of chemical physics vol. 147,16 (2017): 164111. doi: https://doi.org/10.1063/1.4998614
Holmes AA, Umrigar CJ, Sharma S. Excited states using semistochastic heat-bath configuration interaction. J Chem Phys. 2017 Oct 28;147(16):164111. doi: 10.1063/1.4998614. PMID: 29096501.
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Design and development of Unani anti-inflammatory cream.

Journal of Ayurveda and integrative medicine

Fatima S, Zaman R, Haider N, Shamsi S, Alam A.
PMID: 28669703
J Ayurveda Integr Med. 2017 Jul - Sep;8(3):140-144. doi: 10.1016/j.jaim.2017.03.002. Epub 2017 Jun 29.

Inflammation is the symptom of many diseases like rheumatoid arthritis and osteoarthritis. Many side effects are associated with the Non-Steroidal Anti-inflammatory Drugs (NSAIDs) used as conventional treatment for these conditions. In Unani, there are large number of single and...

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Fatima S, Zaman R, Haider N, et al. Design and development of Unani anti-inflammatory cream. J Ayurveda Integr Med. 2017;8(3):140-144doi: 10.1016/j.jaim.2017.03.002.
Fatima, S., Zaman, R., Haider, N., Shamsi, S., & Alam, A. (2017). Design and development of Unani anti-inflammatory cream. Journal of Ayurveda and integrative medicine, 8(3), 140-144. https://doi.org/10.1016/j.jaim.2017.03.002
Fatima, Sana, et al. "Design and development of Unani anti-inflammatory cream." Journal of Ayurveda and integrative medicine vol. 8,3 (2017): 140-144. doi: https://doi.org/10.1016/j.jaim.2017.03.002
Fatima S, Zaman R, Haider N, Shamsi S, Alam A. Design and development of Unani anti-inflammatory cream. J Ayurveda Integr Med. 2017 Jul - Sep;8(3):140-144. doi: 10.1016/j.jaim.2017.03.002. Epub 2017 Jun 29. PMID: 28669703; PMCID: PMC5607395.
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Determinants and Outcome of Metabolic Acidosis in Diarrheal Children Under 5 Years of Age in an Urban Critical Care Ward in Bangladesh.

Global pediatric health

Sharifuzzaman, Sarmin M, Ahmed T, Alam T, Islam SB, Islam MM, Chisti MJ.
PMID: 29152544
Glob Pediatr Health. 2017 Nov 07;4:2333794X17740223. doi: 10.1177/2333794X17740223. eCollection 2017.

We evaluated the independent determinants and outcome of metabolic acidosis in diarrheal children. Children under 5 years of age admitted with diarrhea and severe respiratory distress in the critical care ward at Dhaka Hospital of icddr,b (International Centre for...

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Sharifuzzaman, Sarmin M, Ahmed T, et al. Determinants and Outcome of Metabolic Acidosis in Diarrheal Children Under 5 Years of Age in an Urban Critical Care Ward in Bangladesh. Glob Pediatr Health. 2017;4:2333794X17740223doi: 10.1177/2333794X17740223.
Sharifuzzaman, Sarmin, M., Ahmed, T., Alam, T., Islam, S. B., Islam, M. M., & Chisti, M. J. (2017). Determinants and Outcome of Metabolic Acidosis in Diarrheal Children Under 5 Years of Age in an Urban Critical Care Ward in Bangladesh. Global pediatric health, 42333794X17740223. https://doi.org/10.1177/2333794X17740223
Sharifuzzaman, et al. "Determinants and Outcome of Metabolic Acidosis in Diarrheal Children Under 5 Years of Age in an Urban Critical Care Ward in Bangladesh." Global pediatric health vol. 4 (2017): 2333794X17740223. doi: https://doi.org/10.1177/2333794X17740223
Sharifuzzaman, Sarmin M, Ahmed T, Alam T, Islam SB, Islam MM, Chisti MJ. Determinants and Outcome of Metabolic Acidosis in Diarrheal Children Under 5 Years of Age in an Urban Critical Care Ward in Bangladesh. Glob Pediatr Health. 2017 Nov 07;4:2333794X17740223. doi: 10.1177/2333794X17740223. eCollection 2017. PMID: 29152544; PMCID: PMC5680939.
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Virulence-Related Genes Identified from the Genome Sequence of the Non-O1/Non-O139 Vibrio cholerae Strain VcN1, Isolated from Dhaka, Bangladesh.

Genome announcements

Hossain M, Alam M, Khaleque A, Islam S, Sadique A, Khan N, Halim Z, Sarker M, El-Sayed NM, Huq A, Ahsan GU, Colwell RR, Fletcher JM.
PMID: 29519847
Genome Announc. 2018 Mar 08;6(10). doi: 10.1128/genomeA.01513-17.

We report here the first draft genome sequence of the non-O1/non-O139

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Hossain M, Alam M, Khaleque A, et al. Virulence-Related Genes Identified from the Genome Sequence of the Non-O1/Non-O139 Vibrio cholerae Strain VcN1, Isolated from Dhaka, Bangladesh. Genome Announc. 2018;6(10)doi: 10.1128/genomeA.01513-17.
Hossain, M., Alam, M., Khaleque, A., Islam, S., Sadique, A., Khan, N., Halim, Z., Sarker, M., El-Sayed, N. M., Huq, A., Ahsan, G. U., Colwell, R. R., & Fletcher, J. M. (2018). Virulence-Related Genes Identified from the Genome Sequence of the Non-O1/Non-O139 Vibrio cholerae Strain VcN1, Isolated from Dhaka, Bangladesh. Genome announcements, 6(10), . https://doi.org/10.1128/genomeA.01513-17
Hossain, Maqsud, et al. "Virulence-Related Genes Identified from the Genome Sequence of the Non-O1/Non-O139 Vibrio cholerae Strain VcN1, Isolated from Dhaka, Bangladesh." Genome announcements vol. 6,10 (2018). doi: https://doi.org/10.1128/genomeA.01513-17
Hossain M, Alam M, Khaleque A, Islam S, Sadique A, Khan N, Halim Z, Sarker M, El-Sayed NM, Huq A, Ahsan GU, Colwell RR, Fletcher JM. Virulence-Related Genes Identified from the Genome Sequence of the Non-O1/Non-O139 Vibrio cholerae Strain VcN1, Isolated from Dhaka, Bangladesh. Genome Announc. 2018 Mar 08;6(10). doi: 10.1128/genomeA.01513-17. PMID: 29519847; PMCID: PMC5843720.
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Showing 13 to 24 of 2462 entries