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SH3 domains: modules of protein-protein interactions.

Biophysical reviews

Kurochkina N, Guha U.
PMID: 28510178
Biophys Rev. 2013 Mar;5(1):29-39. doi: 10.1007/s12551-012-0081-z. Epub 2012 Jun 20.

Src homology 3 (SH3) domains are involved in the regulation of important cellular pathways, such as cell proliferation, migration and cytoskeletal modifications. Recognition of polyproline and a number of noncanonical sequences by SH3 domains has been extensively studied by...

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Kurochkina N, Guha U. SH3 domains: modules of protein-protein interactions. Biophys Rev. 2012;5(1):29-39doi: 10.1007/s12551-012-0081-z.
Kurochkina, N., & Guha, U. (2013). SH3 domains: modules of protein-protein interactions. Biophysical reviews, 5(1), 29-39. https://doi.org/10.1007/s12551-012-0081-z
Kurochkina, Natalya, and Guha, Udayan. "SH3 domains: modules of protein-protein interactions." Biophysical reviews vol. 5,1 (2013): 29-39. doi: https://doi.org/10.1007/s12551-012-0081-z
Kurochkina N, Guha U. SH3 domains: modules of protein-protein interactions. Biophys Rev. 2013 Mar;5(1):29-39. doi: 10.1007/s12551-012-0081-z. Epub 2012 Jun 20. PMID: 28510178; PMCID: PMC5418429.
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[The role of vasoactive peptid in lower limbs chronic arterial insufficiency treatment].

Advances in gerontology = Uspekhi gerontologii

Kitachov KV, Sazonov AD, Kozlov KL, Petrov KY, Slusarev AS, Sedova EV.
PMID: 28976154
Adv Gerontol. 2013;26(2):292-296.

Atherosclerosis has lead to lower limbs chronic occlusive arterial disease in 80-90 % of cases. The progress of atherosclerosis is vascular wall self-regulation process violation, and its correction can be made by completion of missing endogenous peptides.OBJECTIVE: assessment of...

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Kitachov KV, Sazonov AD, Kozlov KL, et al. [The role of vasoactive peptid in lower limbs chronic arterial insufficiency treatment]. Adv Gerontol. 2013;26(2):292-296
Kitachov, K. V., Sazonov, A. D., Kozlov, K. L., Petrov, K. Y., Slusarev, A. S., & Sedova, E. V. (2013). [The role of vasoactive peptid in lower limbs chronic arterial insufficiency treatment]. Advances in gerontology = Uspekhi gerontologii, 26(2), 292-296.
Kitachov, K V, et al. "[The role of vasoactive peptid in lower limbs chronic arterial insufficiency treatment]." Advances in gerontology = Uspekhi gerontologii vol. 26,2 (2013): 292-296.
Kitachov KV, Sazonov AD, Kozlov KL, Petrov KY, Slusarev AS, Sedova EV. [The role of vasoactive peptid in lower limbs chronic arterial insufficiency treatment]. Adv Gerontol. 2013;26(2):292-296. Russian. PMID: 28976154.
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The 4.

Chimia

Winter-Werner B, Heinis C, Cramer N.
PMID: 28978371
Chimia (Aarau). 2011 Oct 26;65(10):818-820. doi: 10.2533/chimia.2011.818.

No abstract available.

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Winter-Werner B, Heinis C, Cramer N. The 4. Chimia (Aarau). 2011;65(10):818-820doi: 10.2533/chimia.2011.818.
Winter-Werner, B., Heinis, C., & Cramer, N. (2011). The 4. Chimia, 65(10), 818-820. https://doi.org/10.2533/chimia.2011.818
Winter-Werner, Barbara, et al. "The 4." Chimia vol. 65,10 (2011): 818-820. doi: https://doi.org/10.2533/chimia.2011.818
Winter-Werner B, Heinis C, Cramer N. The 4. Chimia (Aarau). 2011 Oct 26;65(10):818-820. doi: 10.2533/chimia.2011.818. PMID: 28978371.
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Disulfide bond formation of thiols by using carbon nanotubes.

Nanoscale

Hirano A, Kameda T, Sakuraba S, Wada M, Tanaka T, Kataura H.
PMID: 28422249
Nanoscale. 2017 May 04;9(17):5389-5393. doi: 10.1039/c7nr01001j.

Clarification of the interactions between carbon nanotubes (CNTs) and proteinogenic amino acids is a key approach to understanding CNT-protein interactions. Previous studies have addressed the mechanism of the physical adsorption of amino acids onto CNTs. However, little is known...

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Hirano A, Kameda T, Sakuraba S, et al. Disulfide bond formation of thiols by using carbon nanotubes. Nanoscale. 2017;9(17):5389-5393doi: 10.1039/c7nr01001j.
Hirano, A., Kameda, T., Sakuraba, S., Wada, M., Tanaka, T., & Kataura, H. (2017). Disulfide bond formation of thiols by using carbon nanotubes. Nanoscale, 9(17), 5389-5393. https://doi.org/10.1039/c7nr01001j
Hirano, A, et al. "Disulfide bond formation of thiols by using carbon nanotubes." Nanoscale vol. 9,17 (2017): 5389-5393. doi: https://doi.org/10.1039/c7nr01001j
Hirano A, Kameda T, Sakuraba S, Wada M, Tanaka T, Kataura H. Disulfide bond formation of thiols by using carbon nanotubes. Nanoscale. 2017 May 04;9(17):5389-5393. doi: 10.1039/c7nr01001j. PMID: 28422249.
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Development of β-Hairpin Peptides for the Measurement of SCF-Family E3 Ligase Activity in Vitro via Ornithine Ubiquitination.

ACS omega

Houston KM, Melvin AT, Woss GS, Fayer EL, Waters ML, Allbritton NL.
PMID: 28393136
ACS Omega. 2017 Mar 31;2(3):1198-1206. doi: 10.1021/acsomega.7b00109. Epub 2017 Mar 29.

Regulation of the ubiquitin-proteasome system (UPS) to treat select types of cancer has become a popular area of drug discovery research. The FDA approval of proteasome inhibitors Bortezomib and Carfilzomib in the treatment of multiple myeloma has led to...

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Houston KM, Melvin AT, Woss GS, et al. Development of β-Hairpin Peptides for the Measurement of SCF-Family E3 Ligase Activity in Vitro via Ornithine Ubiquitination. ACS Omega. 2017;2(3):1198-1206doi: 10.1021/acsomega.7b00109.
Houston, K. M., Melvin, A. T., Woss, G. S., Fayer, E. L., Waters, M. L., & Allbritton, N. L. (2017). Development of β-Hairpin Peptides for the Measurement of SCF-Family E3 Ligase Activity in Vitro via Ornithine Ubiquitination. ACS omega, 2(3), 1198-1206. https://doi.org/10.1021/acsomega.7b00109
Houston, Kaiulani M, et al. "Development of β-Hairpin Peptides for the Measurement of SCF-Family E3 Ligase Activity in Vitro via Ornithine Ubiquitination." ACS omega vol. 2,3 (2017): 1198-1206. doi: https://doi.org/10.1021/acsomega.7b00109
Houston KM, Melvin AT, Woss GS, Fayer EL, Waters ML, Allbritton NL. Development of β-Hairpin Peptides for the Measurement of SCF-Family E3 Ligase Activity in Vitro via Ornithine Ubiquitination. ACS Omega. 2017 Mar 31;2(3):1198-1206. doi: 10.1021/acsomega.7b00109. Epub 2017 Mar 29. PMID: 28393136; PMCID: PMC5377275.
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Molecular insights into substrate recognition and catalytic mechanism of the chaperone and FKBP peptidyl-prolyl isomerase SlyD.

BMC biology

Quistgaard EM, Weininger U, Ural-Blimke Y, Modig K, Nordlund P, Akke M, Löw C.
PMID: 27664121
BMC Biol. 2016 Sep 23;14(1):82. doi: 10.1186/s12915-016-0300-3.

BACKGROUND: Peptidyl-prolyl isomerases (PPIases) catalyze cis/trans isomerization of peptidyl-prolyl bonds, which is often rate-limiting for protein folding. SlyD is a two-domain enzyme containing both a PPIase FK506-binding protein (FKBP) domain and an insert-in-flap (IF) chaperone domain. To date, the...

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Quistgaard EM, Weininger U, Ural-Blimke Y, et al. Molecular insights into substrate recognition and catalytic mechanism of the chaperone and FKBP peptidyl-prolyl isomerase SlyD. BMC Biol. 2016;14(1):82doi: 10.1186/s12915-016-0300-3.
Quistgaard, E. M., Weininger, U., Ural-Blimke, Y., Modig, K., Nordlund, P., Akke, M., & Löw, C. (2016). Molecular insights into substrate recognition and catalytic mechanism of the chaperone and FKBP peptidyl-prolyl isomerase SlyD. BMC biology, 14(1), 82. https://doi.org/10.1186/s12915-016-0300-3
Quistgaard, Esben M, et al. "Molecular insights into substrate recognition and catalytic mechanism of the chaperone and FKBP peptidyl-prolyl isomerase SlyD." BMC biology vol. 14,1 (2016): 82. doi: https://doi.org/10.1186/s12915-016-0300-3
Quistgaard EM, Weininger U, Ural-Blimke Y, Modig K, Nordlund P, Akke M, Löw C. Molecular insights into substrate recognition and catalytic mechanism of the chaperone and FKBP peptidyl-prolyl isomerase SlyD. BMC Biol. 2016 Sep 23;14(1):82. doi: 10.1186/s12915-016-0300-3. PMID: 27664121; PMCID: PMC5034536.
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Evaluating the relationship of blood pressure, plasma angiotensin peptides and aldosterone with cognitive functions in patients with hypertension.

EXCLI journal

Sen S, Gürel N, Ufuktepe B, Özünal ZG, Büyüklü Ç, Üresin Y.
PMID: 28507470
EXCLI J. 2017 Mar 10;16:245-255. doi: 10.17179/excli2016-725. eCollection 2017.

Renin Angiotensin Aldosterone System (RAAS) plays an important role in the development of hypertension. On the other hand, hypertension is a well-known and independent risk factor for cognitive impairment. The aim of the present study was to evaluate the...

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Sen S, Gürel N, Ufuktepe B, et al. Evaluating the relationship of blood pressure, plasma angiotensin peptides and aldosterone with cognitive functions in patients with hypertension. EXCLI J. 2017;16:245-255doi: 10.17179/excli2016-725.
Sen, S., Gürel, N., Ufuktepe, B., Özünal, Z. G., Büyüklü, �. �., & Üresin, Y. (2017). Evaluating the relationship of blood pressure, plasma angiotensin peptides and aldosterone with cognitive functions in patients with hypertension. EXCLI journal, 16245-255. https://doi.org/10.17179/excli2016-725
Sen, Selçuk, et al. "Evaluating the relationship of blood pressure, plasma angiotensin peptides and aldosterone with cognitive functions in patients with hypertension." EXCLI journal vol. 16 (2017): 245-255. doi: https://doi.org/10.17179/excli2016-725
Sen S, Gürel N, Ufuktepe B, Özünal ZG, Büyüklü Ç, Üresin Y. Evaluating the relationship of blood pressure, plasma angiotensin peptides and aldosterone with cognitive functions in patients with hypertension. EXCLI J. 2017 Mar 10;16:245-255. doi: 10.17179/excli2016-725. eCollection 2017. PMID: 28507470; PMCID: PMC5427471.
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Human DMBT1-Derived Cell-Penetrating Peptides for Intracellular siRNA Delivery.

Molecular therapy. Nucleic acids

Tuttolomondo M, Casella C, Hansen PL, Polo E, Herda LM, Dawson KA, Ditzel HJ, Mollenhauer J.
PMID: 28918028
Mol Ther Nucleic Acids. 2017 Sep 15;8:264-276. doi: 10.1016/j.omtn.2017.06.020. Epub 2017 Jun 29.

Small interfering RNA (siRNA) is a promising molecule for gene therapy, but its therapeutic administration remains problematic. Among the recently proposed vectors, cell-penetrating peptides show great promise in in vivo trials for siRNA delivery. Human protein DMBT1 (deleted in...

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Tuttolomondo M, Casella C, Hansen PL, et al. Human DMBT1-Derived Cell-Penetrating Peptides for Intracellular siRNA Delivery. Mol Ther Nucleic Acids. 2017;8:264-276doi: 10.1016/j.omtn.2017.06.020.
Tuttolomondo, M., Casella, C., Hansen, P. L., Polo, E., Herda, L. M., Dawson, K. A., Ditzel, H. J., & Mollenhauer, J. (2017). Human DMBT1-Derived Cell-Penetrating Peptides for Intracellular siRNA Delivery. Molecular therapy. Nucleic acids, 8264-276. https://doi.org/10.1016/j.omtn.2017.06.020
Tuttolomondo, Martina, et al. "Human DMBT1-Derived Cell-Penetrating Peptides for Intracellular siRNA Delivery." Molecular therapy. Nucleic acids vol. 8 (2017): 264-276. doi: https://doi.org/10.1016/j.omtn.2017.06.020
Tuttolomondo M, Casella C, Hansen PL, Polo E, Herda LM, Dawson KA, Ditzel HJ, Mollenhauer J. Human DMBT1-Derived Cell-Penetrating Peptides for Intracellular siRNA Delivery. Mol Ther Nucleic Acids. 2017 Sep 15;8:264-276. doi: 10.1016/j.omtn.2017.06.020. Epub 2017 Jun 29. PMID: 28918028; PMCID: PMC5514624.
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Designing Fluorescent Peptide Sensors with Dual Specificity for the Detection of HIV-1 Protease.

Chemistry of materials : a publication of the American Chemical Society

Herpoldt KL, Artzy-Schnirman A, Christofferson AJ, Makarucha AJ, de la Rica R, Yarovsky I, Stevens MM.
PMID: 28479671
Chem Mater. 2015 Oct 06;27(20):7187-7195. doi: 10.1021/acs.chemmater.5b03651.

HIV-1 protease is a key enzyme in the life cycle of HIV/AIDS, as it is responsible for the formation of the mature virus particle. We demonstrate here that phage-display peptides raised against this enzyme can be used as peptide...

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Herpoldt KL, Artzy-Schnirman A, Christofferson AJ, et al. Designing Fluorescent Peptide Sensors with Dual Specificity for the Detection of HIV-1 Protease. Chem Mater. 2015;27(20):7187-7195doi: 10.1021/acs.chemmater.5b03651.
Herpoldt, K. L., Artzy-Schnirman, A., Christofferson, A. J., Makarucha, A. J., de la Rica, R., Yarovsky, I., & Stevens, M. M. (2015). Designing Fluorescent Peptide Sensors with Dual Specificity for the Detection of HIV-1 Protease. Chemistry of materials : a publication of the American Chemical Society, 27(20), 7187-7195. https://doi.org/10.1021/acs.chemmater.5b03651
Herpoldt, Karla-Luise, et al. "Designing Fluorescent Peptide Sensors with Dual Specificity for the Detection of HIV-1 Protease." Chemistry of materials : a publication of the American Chemical Society vol. 27,20 (2015): 7187-7195. doi: https://doi.org/10.1021/acs.chemmater.5b03651
Herpoldt KL, Artzy-Schnirman A, Christofferson AJ, Makarucha AJ, de la Rica R, Yarovsky I, Stevens MM. Designing Fluorescent Peptide Sensors with Dual Specificity for the Detection of HIV-1 Protease. Chem Mater. 2015 Oct 06;27(20):7187-7195. doi: 10.1021/acs.chemmater.5b03651. PMID: 28479671; PMCID: PMC5419500.
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Remote Optically Controlled Modulation of Catalytic Properties of Nanoparticles through Reconfiguration of the Inorganic/Organic Interface.

ACS nano

Lawrence RL, Scola B, Li Y, Lim CK, Liu Y, Prasad PN, Swihart MT, Knecht MR.
PMID: 27666415
ACS Nano. 2016 Oct 25;10(10):9470-9477. doi: 10.1021/acsnano.6b04555. Epub 2016 Oct 03.

We introduce here a concept of remote photoinitiated reconfiguration of ligands adsorbed onto a nanocatalyst surface to enable reversible modulation of the catalytic activity. This is demonstrated by using peptide-ligand-capped Au nanoparticles with a photoswitchable azobenzene unit integrated into...

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Lawrence RL, Scola B, Li Y, et al. Remote Optically Controlled Modulation of Catalytic Properties of Nanoparticles through Reconfiguration of the Inorganic/Organic Interface. ACS Nano. 2016;10(10):9470-9477doi: 10.1021/acsnano.6b04555.
Lawrence, R. L., Scola, B., Li, Y., Lim, C. K., Liu, Y., Prasad, P. N., Swihart, M. T., & Knecht, M. R. (2016). Remote Optically Controlled Modulation of Catalytic Properties of Nanoparticles through Reconfiguration of the Inorganic/Organic Interface. ACS nano, 10(10), 9470-9477. https://doi.org/10.1021/acsnano.6b04555
Lawrence, Randy L, et al. "Remote Optically Controlled Modulation of Catalytic Properties of Nanoparticles through Reconfiguration of the Inorganic/Organic Interface." ACS nano vol. 10,10 (2016): 9470-9477. doi: https://doi.org/10.1021/acsnano.6b04555
Lawrence RL, Scola B, Li Y, Lim CK, Liu Y, Prasad PN, Swihart MT, Knecht MR. Remote Optically Controlled Modulation of Catalytic Properties of Nanoparticles through Reconfiguration of the Inorganic/Organic Interface. ACS Nano. 2016 Oct 25;10(10):9470-9477. doi: 10.1021/acsnano.6b04555. Epub 2016 Oct 03. PMID: 27666415.
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Rice Bran and Probiotics Alter the Porcine Large Intestine and Serum Metabolomes for Protection against Human Rotavirus Diarrhea.

Frontiers in microbiology

Nealon NJ, Yuan L, Yang X, Ryan EP.
PMID: 28484432
Front Microbiol. 2017 Apr 21;8:653. doi: 10.3389/fmicb.2017.00653. eCollection 2017.

Human rotavirus (HRV) is a leading cause of severe childhood diarrhea, and there is limited vaccine efficacy in the developing world. Neonatal gnotobiotic pigs consuming a prophylactic synbiotic combination of probiotics and rice bran (Pro+RB) did not exhibit HRV...

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Nealon NJ, Yuan L, Yang X, et al. Rice Bran and Probiotics Alter the Porcine Large Intestine and Serum Metabolomes for Protection against Human Rotavirus Diarrhea. Front Microbiol. 2017;8:653doi: 10.3389/fmicb.2017.00653.
Nealon, N. J., Yuan, L., Yang, X., & Ryan, E. P. (2017). Rice Bran and Probiotics Alter the Porcine Large Intestine and Serum Metabolomes for Protection against Human Rotavirus Diarrhea. Frontiers in microbiology, 8653. https://doi.org/10.3389/fmicb.2017.00653
Nealon, Nora Jean, et al. "Rice Bran and Probiotics Alter the Porcine Large Intestine and Serum Metabolomes for Protection against Human Rotavirus Diarrhea." Frontiers in microbiology vol. 8 (2017): 653. doi: https://doi.org/10.3389/fmicb.2017.00653
Nealon NJ, Yuan L, Yang X, Ryan EP. Rice Bran and Probiotics Alter the Porcine Large Intestine and Serum Metabolomes for Protection against Human Rotavirus Diarrhea. Front Microbiol. 2017 Apr 21;8:653. doi: 10.3389/fmicb.2017.00653. eCollection 2017. PMID: 28484432; PMCID: PMC5399067.
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Immunological Functions of the Membrane Proximal Region of MHC Class II Molecules.

F1000Research

Harton J, Jin L, Hahn A, Drake J.
PMID: 27006762
F1000Res. 2016 Mar 17;5. doi: 10.12688/f1000research.7610.1. eCollection 2016.

Major histocompatibility complex (MHC) class II molecules present exogenously derived antigen peptides to CD4 T cells, driving activation of naïve T cells and supporting CD4-driven immune functions. However, MHC class II molecules are not inert protein pedestals that simply...

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Harton J, Jin L, Hahn A, et al. Immunological Functions of the Membrane Proximal Region of MHC Class II Molecules. F1000Res. 2016;5doi: 10.12688/f1000research.7610.1.
Harton, J., Jin, L., Hahn, A., & Drake, J. (2016). Immunological Functions of the Membrane Proximal Region of MHC Class II Molecules. F1000Research, 5. https://doi.org/10.12688/f1000research.7610.1
Harton, Jonathan, et al. "Immunological Functions of the Membrane Proximal Region of MHC Class II Molecules." F1000Research vol. 5 (2016). doi: https://doi.org/10.12688/f1000research.7610.1
Harton J, Jin L, Hahn A, Drake J. Immunological Functions of the Membrane Proximal Region of MHC Class II Molecules. F1000Res. 2016 Mar 17;5. doi: 10.12688/f1000research.7610.1. eCollection 2016. PMID: 27006762; PMCID: PMC4798158.
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