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Prototype Foamy Virus Integrase Displays Unique Biochemical Activities among Retroviral Integrases.

Biomolecules

Rabe AJ, Tan YY, Larue RC, Yoder KE.
PMID: 34944553
Biomolecules. 2021 Dec 20;11(12). doi: 10.3390/biom11121910.

Integrases of different retroviruses assemble as functional complexes with varying multimers of the protein. Retroviral integrases require a divalent metal cation to perform one-step transesterification catalysis. Tetrameric prototype foamy virus (PFV) intasomes assembled from purified integrase and viral DNA...

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Rabe AJ, Tan YY, Larue RC, et al. Prototype Foamy Virus Integrase Displays Unique Biochemical Activities among Retroviral Integrases. Biomolecules. 2021;11(12)doi: 10.3390/biom11121910.
Rabe, A. J., Tan, Y. Y., Larue, R. C., & Yoder, K. E. (2021). Prototype Foamy Virus Integrase Displays Unique Biochemical Activities among Retroviral Integrases. Biomolecules, 11(12), . https://doi.org/10.3390/biom11121910
Rabe, Anthony J, et al. "Prototype Foamy Virus Integrase Displays Unique Biochemical Activities among Retroviral Integrases." Biomolecules vol. 11,12 (2021). doi: https://doi.org/10.3390/biom11121910
Rabe AJ, Tan YY, Larue RC, Yoder KE. Prototype Foamy Virus Integrase Displays Unique Biochemical Activities among Retroviral Integrases. Biomolecules. 2021 Dec 20;11(12). doi: 10.3390/biom11121910. PMID: 34944553; PMCID: PMC8699820.
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Virus and Potential Host Microbes from Viral-Enriched Metagenomic Characterization in the High-Altitude Wetland, Salar de Huasco, Chile.

Microorganisms

Eissler Y, Dorador C, Kieft B, Molina V, Hengst M.
PMID: 32698305
Microorganisms. 2020 Jul 20;8(7). doi: 10.3390/microorganisms8071077.

Salar de Huasco is a wetland in the Andes mountains, located 3800 m above sea level at the Chilean Altiplano. Here we present a study aimed at characterizing the viral fraction and the microbial communities through metagenomic analysis. Two...

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Eissler Y, Dorador C, Kieft B, et al. Virus and Potential Host Microbes from Viral-Enriched Metagenomic Characterization in the High-Altitude Wetland, Salar de Huasco, Chile. Microorganisms. 2020;8(7)doi: 10.3390/microorganisms8071077.
Eissler, Y., Dorador, C., Kieft, B., Molina, V., & Hengst, M. (2020). Virus and Potential Host Microbes from Viral-Enriched Metagenomic Characterization in the High-Altitude Wetland, Salar de Huasco, Chile. Microorganisms, 8(7), . https://doi.org/10.3390/microorganisms8071077
Eissler, Yoanna, et al. "Virus and Potential Host Microbes from Viral-Enriched Metagenomic Characterization in the High-Altitude Wetland, Salar de Huasco, Chile." Microorganisms vol. 8,7 (2020). doi: https://doi.org/10.3390/microorganisms8071077
Eissler Y, Dorador C, Kieft B, Molina V, Hengst M. Virus and Potential Host Microbes from Viral-Enriched Metagenomic Characterization in the High-Altitude Wetland, Salar de Huasco, Chile. Microorganisms. 2020 Jul 20;8(7). doi: 10.3390/microorganisms8071077. PMID: 32698305; PMCID: PMC7409041.
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Relative Comparison of Catalytic Characteristics of Human Foamy Virus and HIV-1 Integrases.

Acta naturae

Knyazhanskaya ES, Smolov MA, Kondrashina OV, Gottikh MB.
PMID: 22649606
Acta Naturae. 2009 Jul;1(2):78-80.

Due to their ability to integrate into the host cell's genome, retroviruses represent an optimal basis for the creation of gene therapy vectors. The integration reaction is carried out by a viral enzyme integrase: thus, a detailed research of...

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Knyazhanskaya ES, Smolov MA, Kondrashina OV, et al. Relative Comparison of Catalytic Characteristics of Human Foamy Virus and HIV-1 Integrases. Acta Naturae. 2009;1(2):78-80
Knyazhanskaya, E. S., Smolov, M. A., Kondrashina, O. V., & Gottikh, M. B. (2009). Relative Comparison of Catalytic Characteristics of Human Foamy Virus and HIV-1 Integrases. Acta naturae, 1(2), 78-80.
Knyazhanskaya, E S, et al. "Relative Comparison of Catalytic Characteristics of Human Foamy Virus and HIV-1 Integrases." Acta naturae vol. 1,2 (2009): 78-80.
Knyazhanskaya ES, Smolov MA, Kondrashina OV, Gottikh MB. Relative Comparison of Catalytic Characteristics of Human Foamy Virus and HIV-1 Integrases. Acta Naturae. 2009 Jul;1(2):78-80. PMID: 22649606; PMCID: PMC3347520.
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Ginger DNA transposons in eukaryotes and their evolutionary relationships with long terminal repeat retrotransposons.

Mobile DNA

Bao W, Kapitonov VV, Jurka J.
PMID: 20226081
Mob DNA. 2010 Jan 25;1(1):3. doi: 10.1186/1759-8753-1-3.

BACKGROUND: In eukaryotes, long terminal repeat (LTR) retrotransposons such as Copia, BEL and Gypsy integrate their DNA copies into the host genome using a particular type of DDE transposase called integrase (INT). The Gypsy INT-like transposase is also conserved...

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Bao W, Kapitonov VV, Jurka J. Ginger DNA transposons in eukaryotes and their evolutionary relationships with long terminal repeat retrotransposons. Mob DNA. 2010;1(1):3doi: 10.1186/1759-8753-1-3.
Bao, W., Kapitonov, V. V., & Jurka, J. (2010). Ginger DNA transposons in eukaryotes and their evolutionary relationships with long terminal repeat retrotransposons. Mobile DNA, 1(1), 3. https://doi.org/10.1186/1759-8753-1-3
Bao, Weidong, et al. "Ginger DNA transposons in eukaryotes and their evolutionary relationships with long terminal repeat retrotransposons." Mobile DNA vol. 1,1 (2010): 3. doi: https://doi.org/10.1186/1759-8753-1-3
Bao W, Kapitonov VV, Jurka J. Ginger DNA transposons in eukaryotes and their evolutionary relationships with long terminal repeat retrotransposons. Mob DNA. 2010 Jan 25;1(1):3. doi: 10.1186/1759-8753-1-3. PMID: 20226081; PMCID: PMC2836005.
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Filamentous phages of Ralstonia solanacearum: double-edged swords for pathogenic bacteria.

Frontiers in microbiology

Yamada T.
PMID: 24204365
Front Microbiol. 2013 Nov 04;4:325. doi: 10.3389/fmicb.2013.00325. eCollection 2013.

Some phages from genus Inovirus use host or bacteriophage-encoded site-specific integrases or recombinases establish a prophage state. During integration or excision, a superinfective form can be produced. The three states (free, prophage, and superinfective) of such phages exert different...

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Yamada T. Filamentous phages of Ralstonia solanacearum: double-edged swords for pathogenic bacteria. Front Microbiol. 2013;4:325doi: 10.3389/fmicb.2013.00325.
Yamada, T. (2013). Filamentous phages of Ralstonia solanacearum: double-edged swords for pathogenic bacteria. Frontiers in microbiology, 4325. https://doi.org/10.3389/fmicb.2013.00325
Yamada, Takashi. "Filamentous phages of Ralstonia solanacearum: double-edged swords for pathogenic bacteria." Frontiers in microbiology vol. 4 (2013): 325. doi: https://doi.org/10.3389/fmicb.2013.00325
Yamada T. Filamentous phages of Ralstonia solanacearum: double-edged swords for pathogenic bacteria. Front Microbiol. 2013 Nov 04;4:325. doi: 10.3389/fmicb.2013.00325. eCollection 2013. PMID: 24204365; PMCID: PMC3816273.
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Reconstructing ecosystem functions of the active microbial community of the Baltic Sea oxygen depleted sediments.

PeerJ

Thureborn P, Franzetti A, Lundin D, Sjöling S.
PMID: 26823996
PeerJ. 2016 Jan 19;4:e1593. doi: 10.7717/peerj.1593. eCollection 2016.

Baltic Sea deep water and sediments hold one of the largest anthropogenically induced hypoxic areas in the world. High nutrient input and low water exchange result in eutrophication and oxygen depletion below the halocline. As a consequence at Landsort...

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Thureborn P, Franzetti A, Lundin D, et al. Reconstructing ecosystem functions of the active microbial community of the Baltic Sea oxygen depleted sediments. PeerJ. 2016;4:e1593doi: 10.7717/peerj.1593.
Thureborn, P., Franzetti, A., Lundin, D., & Sjöling, S. (2016). Reconstructing ecosystem functions of the active microbial community of the Baltic Sea oxygen depleted sediments. PeerJ, 4e1593. https://doi.org/10.7717/peerj.1593
Thureborn, Petter, et al. "Reconstructing ecosystem functions of the active microbial community of the Baltic Sea oxygen depleted sediments." PeerJ vol. 4 (2016): e1593. doi: https://doi.org/10.7717/peerj.1593
Thureborn P, Franzetti A, Lundin D, Sjöling S. Reconstructing ecosystem functions of the active microbial community of the Baltic Sea oxygen depleted sediments. PeerJ. 2016 Jan 19;4:e1593. doi: 10.7717/peerj.1593. eCollection 2016. PMID: 26823996; PMCID: PMC4730985.
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Contribution of plasmidome, metal resistome and integrases to the persistence of the antibiotic resistome in aquatic environments.

Environmental pollution (Barking, Essex : 1987)

Di Cesare A, Sabatino R, Yang Y, Brambilla D, Li P, Fontaneto D, Eckert EM, Corno G.
PMID: 34974089
Environ Pollut. 2021 Dec 30;297:118774. doi: 10.1016/j.envpol.2021.118774. Epub 2021 Dec 30.

Wastewater treatment plants (WWTPs) are among the main hotspots of antibiotic resistance genes (ARGs) in the environment. Previously, we demonstrated that, by increasing anthropogenic pollution, the antibiotic resistome persisted in the microbial community of rivers and lakes, independently by...

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Di Cesare A, Sabatino R, Yang Y, et al. Contribution of plasmidome, metal resistome and integrases to the persistence of the antibiotic resistome in aquatic environments. Environ Pollut. 2021;297:118774doi: 10.1016/j.envpol.2021.118774.
Di Cesare, A., Sabatino, R., Yang, Y., Brambilla, D., Li, P., Fontaneto, D., Eckert, E. M., & Corno, G. (2021). Contribution of plasmidome, metal resistome and integrases to the persistence of the antibiotic resistome in aquatic environments. Environmental pollution (Barking, Essex : 1987), 297118774. https://doi.org/10.1016/j.envpol.2021.118774
Di Cesare, Andrea, et al. "Contribution of plasmidome, metal resistome and integrases to the persistence of the antibiotic resistome in aquatic environments." Environmental pollution (Barking, Essex : 1987) vol. 297 (2021): 118774. doi: https://doi.org/10.1016/j.envpol.2021.118774
Di Cesare A, Sabatino R, Yang Y, Brambilla D, Li P, Fontaneto D, Eckert EM, Corno G. Contribution of plasmidome, metal resistome and integrases to the persistence of the antibiotic resistome in aquatic environments. Environ Pollut. 2021 Dec 30;297:118774. doi: 10.1016/j.envpol.2021.118774. Epub 2021 Dec 30. PMID: 34974089.
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Metagenomic and Resistome Analysis of a Full-Scale Municipal Wastewater Treatment Plant in Singapore Containing Membrane Bioreactors.

Frontiers in microbiology

Ng C, Tan B, Jiang XT, Gu X, Chen H, Schmitz BW, Haller L, Charles FR, Zhang T, Gin K.
PMID: 30833934
Front Microbiol. 2019 Feb 18;10:172. doi: 10.3389/fmicb.2019.00172. eCollection 2019.

Reclaimed water provides a water supply alternative to address problems of scarcity in urbanized cities with high living densities and limited natural water resources. In this study, wastewater metagenomes from 6 stages of a wastewater treatment plant (WWTP) integrating...

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Ng C, Tan B, Jiang XT, et al. Metagenomic and Resistome Analysis of a Full-Scale Municipal Wastewater Treatment Plant in Singapore Containing Membrane Bioreactors. Front Microbiol. 2019;10:172doi: 10.3389/fmicb.2019.00172.
Ng, C., Tan, B., Jiang, X. T., Gu, X., Chen, H., Schmitz, B. W., Haller, L., Charles, F. R., Zhang, T., & Gin, K. (2019). Metagenomic and Resistome Analysis of a Full-Scale Municipal Wastewater Treatment Plant in Singapore Containing Membrane Bioreactors. Frontiers in microbiology, 10172. https://doi.org/10.3389/fmicb.2019.00172
Ng, Charmaine, et al. "Metagenomic and Resistome Analysis of a Full-Scale Municipal Wastewater Treatment Plant in Singapore Containing Membrane Bioreactors." Frontiers in microbiology vol. 10 (2019): 172. doi: https://doi.org/10.3389/fmicb.2019.00172
Ng C, Tan B, Jiang XT, Gu X, Chen H, Schmitz BW, Haller L, Charles FR, Zhang T, Gin K. Metagenomic and Resistome Analysis of a Full-Scale Municipal Wastewater Treatment Plant in Singapore Containing Membrane Bioreactors. Front Microbiol. 2019 Feb 18;10:172. doi: 10.3389/fmicb.2019.00172. eCollection 2019. PMID: 30833934; PMCID: PMC6387931.
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Use of orthogonal serine integrases to multiplex plasmid conjugation and integration from .

Access microbiology

Gao H, Smith MCM.
PMID: 35024553
Access Microbiol. 2021 Dec 08;3(12):000291. doi: 10.1099/acmi.0.000291. eCollection 2021.

Some major producers of useful bioactive natural products belong to the genus

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Gao H, Smith MCM. Use of orthogonal serine integrases to multiplex plasmid conjugation and integration from . Access Microbiol. 2021;3(12):000291doi: 10.1099/acmi.0.000291.
Gao, H., & Smith, M. C. M. (2021). Use of orthogonal serine integrases to multiplex plasmid conjugation and integration from . Access microbiology, 3(12), 000291. https://doi.org/10.1099/acmi.0.000291
Gao, Hong, and Smith, Margaret C M. "Use of orthogonal serine integrases to multiplex plasmid conjugation and integration from ." Access microbiology vol. 3,12 (2021): 000291. doi: https://doi.org/10.1099/acmi.0.000291
Gao H, Smith MCM. Use of orthogonal serine integrases to multiplex plasmid conjugation and integration from . Access Microbiol. 2021 Dec 08;3(12):000291. doi: 10.1099/acmi.0.000291. eCollection 2021. PMID: 35024553; PMCID: PMC8749152.
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Metagenomic community composition and resistome analysis in a full-scale cold climate wastewater treatment plant.

Environmental microbiome

Jankowski P, Gan J, Le T, McKennitt M, Garcia A, Yanaç K, Yuan Q, Uyaguari-Diaz M.
PMID: 35033203
Environ Microbiome. 2022 Jan 15;17(1):3. doi: 10.1186/s40793-022-00398-1.

BACKGROUND: Wastewater treatment plants are an essential part of maintaining the health and safety of the general public. However, they are also an anthropogenic source of antibiotic resistance genes. In this study, we characterized the resistome, the distribution of...

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Jankowski P, Gan J, Le T, et al. Metagenomic community composition and resistome analysis in a full-scale cold climate wastewater treatment plant. Environ Microbiome. 2022;17(1):3doi: 10.1186/s40793-022-00398-1.
Jankowski, P., Gan, J., Le, T., McKennitt, M., Garcia, A., Yanaç, K., Yuan, Q., & Uyaguari-Diaz, M. (2022). Metagenomic community composition and resistome analysis in a full-scale cold climate wastewater treatment plant. Environmental microbiome, 17(1), 3. https://doi.org/10.1186/s40793-022-00398-1
Jankowski, Paul, et al. "Metagenomic community composition and resistome analysis in a full-scale cold climate wastewater treatment plant." Environmental microbiome vol. 17,1 (2022): 3. doi: https://doi.org/10.1186/s40793-022-00398-1
Jankowski P, Gan J, Le T, McKennitt M, Garcia A, Yanaç K, Yuan Q, Uyaguari-Diaz M. Metagenomic community composition and resistome analysis in a full-scale cold climate wastewater treatment plant. Environ Microbiome. 2022 Jan 15;17(1):3. doi: 10.1186/s40793-022-00398-1. PMID: 35033203.
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Use of orthogonal serine integrases to multiplex plasmid conjugation and integration from .

Access microbiology

Gao H, Smith MCM.
PMID: 35024553
Access Microbiol. 2021 Dec 08;3(12):000291. doi: 10.1099/acmi.0.000291. eCollection 2021.

Some major producers of useful bioactive natural products belong to the genus

Cite
Gao H, Smith MCM. Use of orthogonal serine integrases to multiplex plasmid conjugation and integration from . Access Microbiol. 2021;3(12):000291doi: 10.1099/acmi.0.000291.
Gao, H., & Smith, M. C. M. (2021). Use of orthogonal serine integrases to multiplex plasmid conjugation and integration from . Access microbiology, 3(12), 000291. https://doi.org/10.1099/acmi.0.000291
Gao, Hong, and Smith, Margaret C M. "Use of orthogonal serine integrases to multiplex plasmid conjugation and integration from ." Access microbiology vol. 3,12 (2021): 000291. doi: https://doi.org/10.1099/acmi.0.000291
Gao H, Smith MCM. Use of orthogonal serine integrases to multiplex plasmid conjugation and integration from . Access Microbiol. 2021 Dec 08;3(12):000291. doi: 10.1099/acmi.0.000291. eCollection 2021. PMID: 35024553; PMCID: PMC8749152.
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Comparative genomic analysis of clinical and environmental Vibrio vulnificus isolates revealed biotype 3 evolutionary relationships.

Frontiers in microbiology

Koton Y, Gordon M, Chalifa-Caspi V, Bisharat N.
PMID: 25642229
Front Microbiol. 2015 Jan 15;5:803. doi: 10.3389/fmicb.2014.00803. eCollection 2014.

In 1996 a common-source outbreak of severe soft tissue and bloodstream infections erupted among Israeli fish farmers and fish consumers due to changes in fish marketing policies. The causative pathogen was a new strain of Vibrio vulnificus, named biotype...

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Koton Y, Gordon M, Chalifa-Caspi V, et al. Comparative genomic analysis of clinical and environmental Vibrio vulnificus isolates revealed biotype 3 evolutionary relationships. Front Microbiol. 2015;5:803doi: 10.3389/fmicb.2014.00803.
Koton, Y., Gordon, M., Chalifa-Caspi, V., & Bisharat, N. (2014). Comparative genomic analysis of clinical and environmental Vibrio vulnificus isolates revealed biotype 3 evolutionary relationships. Frontiers in microbiology, 5803. https://doi.org/10.3389/fmicb.2014.00803
Koton, Yael, et al. "Comparative genomic analysis of clinical and environmental Vibrio vulnificus isolates revealed biotype 3 evolutionary relationships." Frontiers in microbiology vol. 5 (2014): 803. doi: https://doi.org/10.3389/fmicb.2014.00803
Koton Y, Gordon M, Chalifa-Caspi V, Bisharat N. Comparative genomic analysis of clinical and environmental Vibrio vulnificus isolates revealed biotype 3 evolutionary relationships. Front Microbiol. 2015 Jan 15;5:803. doi: 10.3389/fmicb.2014.00803. eCollection 2014. PMID: 25642229; PMCID: PMC4295529.
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Showing 13 to 24 of 60 entries