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Plasticity of gene expression according to salinity in the testis of broodstock and F1 black-chinned tilapia, Sarotherodon melanotheron heudelotii.

PeerJ

Avarre JC, Guinand B, Dugué R, Cosson J, Legendre M, Panfili J, Durand JD.
PMID: 25548735
PeerJ. 2014 Dec 18;2:e702. doi: 10.7717/peerj.702. eCollection 2014.

The black-chinned tilapia Sarotherodon melanotheron heudelotii Rüppell 1852 (Teleostei, Cichlidae) displays remarkable acclimation capacities. When exposed to drastic changes of salinity, which can be the case in its natural habitat, it develops quick physiological responses and keeps reproducing. The...

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Avarre JC, Guinand B, Dugué R, et al. Plasticity of gene expression according to salinity in the testis of broodstock and F1 black-chinned tilapia, Sarotherodon melanotheron heudelotii. PeerJ. 2014;2:e702doi: 10.7717/peerj.702.
Avarre, J. C., Guinand, B., Dugué, R., Cosson, J., Legendre, M., Panfili, J., & Durand, J. D. (2014). Plasticity of gene expression according to salinity in the testis of broodstock and F1 black-chinned tilapia, Sarotherodon melanotheron heudelotii. PeerJ, 2e702. https://doi.org/10.7717/peerj.702
Avarre, Jean-Christophe, et al. "Plasticity of gene expression according to salinity in the testis of broodstock and F1 black-chinned tilapia, Sarotherodon melanotheron heudelotii." PeerJ vol. 2 (2014): e702. doi: https://doi.org/10.7717/peerj.702
Avarre JC, Guinand B, Dugué R, Cosson J, Legendre M, Panfili J, Durand JD. Plasticity of gene expression according to salinity in the testis of broodstock and F1 black-chinned tilapia, Sarotherodon melanotheron heudelotii. PeerJ. 2014 Dec 18;2:e702. doi: 10.7717/peerj.702. eCollection 2014. PMID: 25548735; PMCID: PMC4273931.
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Statistical mechanics of two-dimensional shuffled foams: geometry-topology correlation in small or large disorder limits.

Physical review. E, Statistical, nonlinear, and soft matter physics

Durand M, Kraynik AM, van Swol F, Käfer J, Quilliet C, Cox S, Ataei Talebi S, Graner F.
PMID: 25019778
Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Jun;89(6):062309. doi: 10.1103/PhysRevE.89.062309. Epub 2014 Jun 19.

Bubble monolayers are model systems for experiments and simulations of two-dimensional packing problems of deformable objects. We explore the relation between the distributions of the number of bubble sides (topology) and the bubble areas (geometry) in the low liquid...

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Durand M, Kraynik AM, van Swol F, et al. Statistical mechanics of two-dimensional shuffled foams: geometry-topology correlation in small or large disorder limits. Phys Rev E Stat Nonlin Soft Matter Phys. 2014;89(6):062309doi: 10.1103/PhysRevE.89.062309.
Durand, M., Kraynik, A. M., van Swol, F., Käfer, J., Quilliet, C., Cox, S., Ataei Talebi, S., & Graner, F. (2014). Statistical mechanics of two-dimensional shuffled foams: geometry-topology correlation in small or large disorder limits. Physical review. E, Statistical, nonlinear, and soft matter physics, 89(6), 062309. https://doi.org/10.1103/PhysRevE.89.062309
Durand, Marc, et al. "Statistical mechanics of two-dimensional shuffled foams: geometry-topology correlation in small or large disorder limits." Physical review. E, Statistical, nonlinear, and soft matter physics vol. 89,6 (2014): 062309. doi: https://doi.org/10.1103/PhysRevE.89.062309
Durand M, Kraynik AM, van Swol F, Käfer J, Quilliet C, Cox S, Ataei Talebi S, Graner F. Statistical mechanics of two-dimensional shuffled foams: geometry-topology correlation in small or large disorder limits. Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Jun;89(6):062309. doi: 10.1103/PhysRevE.89.062309. Epub 2014 Jun 19. PMID: 25019778.
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Impact of germination time and type of illumination on carotenoidcontent, protein solubility and in vitro protein digestibility of chickpea(Cicer arietinum L.) sprouts.

Food chemistry

Khattak AB, Zeb A, Bibi N.
PMID: 26049993
Food Chem. 2008 Aug 15;109(4):797-801. doi: 10.1016/j.foodchem.2008.01.046. Epub 2008 Feb 02.

Sprouts have been reported to be nutritionally superior to their respective seeds with higher levels of nutrients and lower amounts of antinutrients. Significant differences occur in these nutrients and antinutrients with germination under different types of illumination. This paper...

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Khattak AB, Zeb A, Bibi N. Impact of germination time and type of illumination on carotenoidcontent, protein solubility and in vitro protein digestibility of chickpea(Cicer arietinum L.) sprouts. Food Chem. 2008;109(4):797-801doi: 10.1016/j.foodchem.2008.01.046.
Khattak, A. B., Zeb, A., & Bibi, N. (2008). Impact of germination time and type of illumination on carotenoidcontent, protein solubility and in vitro protein digestibility of chickpea(Cicer arietinum L.) sprouts. Food chemistry, 109(4), 797-801. https://doi.org/10.1016/j.foodchem.2008.01.046
Khattak, Amal Badshah, et al. "Impact of germination time and type of illumination on carotenoidcontent, protein solubility and in vitro protein digestibility of chickpea(Cicer arietinum L.) sprouts." Food chemistry vol. 109,4 (2008): 797-801. doi: https://doi.org/10.1016/j.foodchem.2008.01.046
Khattak AB, Zeb A, Bibi N. Impact of germination time and type of illumination on carotenoidcontent, protein solubility and in vitro protein digestibility of chickpea(Cicer arietinum L.) sprouts. Food Chem. 2008 Aug 15;109(4):797-801. doi: 10.1016/j.foodchem.2008.01.046. Epub 2008 Feb 02. PMID: 26049993.
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TALEN-mediated apc mutation in Xenopus tropicalis phenocopies familial adenomatous polyposis.

Oncoscience

Van Nieuwenhuysen T, Naert T, Tran HT, Van Imschoot G, Geurs S, Sanders E, Creytens D, Van Roy F, Vleminckx K.
PMID: 26097888
Oncoscience. 2015 May 19;2(5):555-66. doi: 10.18632/oncoscience.166. eCollection 2015.

Truncating mutations in the tumor suppressor gene adenomatous polyposis coli (APC) are the initiating step in the vast majority of sporadic colorectal cancers, and they underlie familial adenomatous polyposis (FAP) syndromes. Modeling of APC- driven tumor formation in the...

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Van Nieuwenhuysen T, Naert T, Tran HT, et al. TALEN-mediated apc mutation in Xenopus tropicalis phenocopies familial adenomatous polyposis. Oncoscience. 2015;2(5):555-66doi: 10.18632/oncoscience.166.
Van Nieuwenhuysen, T., Naert, T., Tran, H. T., Van Imschoot, G., Geurs, S., Sanders, E., Creytens, D., Van Roy, F., & Vleminckx, K. (2015). TALEN-mediated apc mutation in Xenopus tropicalis phenocopies familial adenomatous polyposis. Oncoscience, 2(5), 555-66. https://doi.org/10.18632/oncoscience.166
Van Nieuwenhuysen, Tom, et al. "TALEN-mediated apc mutation in Xenopus tropicalis phenocopies familial adenomatous polyposis." Oncoscience vol. 2,5 (2015): 555-66. doi: https://doi.org/10.18632/oncoscience.166
Van Nieuwenhuysen T, Naert T, Tran HT, Van Imschoot G, Geurs S, Sanders E, Creytens D, Van Roy F, Vleminckx K. TALEN-mediated apc mutation in Xenopus tropicalis phenocopies familial adenomatous polyposis. Oncoscience. 2015 May 19;2(5):555-66. doi: 10.18632/oncoscience.166. eCollection 2015. PMID: 26097888; PMCID: PMC4468341.
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Metabolic network motifs can provide novel insights into evolution: The evolutionary origin of Eukaryotic organelles as a case study.

Computational biology and chemistry

Shellman ER, Chen Y, Lin X, Burant CF, Schnell S.
PMID: 25462333
Comput Biol Chem. 2014 Dec;53:242-250. doi: 10.1016/j.compbiolchem.2014.09.006. Epub 2014 Sep 21.

Phylogenetic trees are typically constructed using genetic and genomic data, and provide robust evolutionary relationships of species from the genomic point of view. We present an application of network motif mining and analysis of metabolic pathways that when used...

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Shellman ER, Chen Y, Lin X, et al. Metabolic network motifs can provide novel insights into evolution: The evolutionary origin of Eukaryotic organelles as a case study. Comput Biol Chem. 2014;53:242-250doi: 10.1016/j.compbiolchem.2014.09.006.
Shellman, E. R., Chen, Y., Lin, X., Burant, C. F., & Schnell, S. (2014). Metabolic network motifs can provide novel insights into evolution: The evolutionary origin of Eukaryotic organelles as a case study. Computational biology and chemistry, 53242-250. https://doi.org/10.1016/j.compbiolchem.2014.09.006
Shellman, Erin R, et al. "Metabolic network motifs can provide novel insights into evolution: The evolutionary origin of Eukaryotic organelles as a case study." Computational biology and chemistry vol. 53 (2014): 242-250. doi: https://doi.org/10.1016/j.compbiolchem.2014.09.006
Shellman ER, Chen Y, Lin X, Burant CF, Schnell S. Metabolic network motifs can provide novel insights into evolution: The evolutionary origin of Eukaryotic organelles as a case study. Comput Biol Chem. 2014 Dec;53:242-250. doi: 10.1016/j.compbiolchem.2014.09.006. Epub 2014 Sep 21. PMID: 25462333; PMCID: PMC4254655.
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A Facile Solid-Phase Route to Renewable Aromatic Chemicals from Biobased Furanics.

Angewandte Chemie (International ed. in English)

Thiyagarajan S, Genuino HC, van der Waal JC, de Jong E, Weckhuysen BM, van Haveren J, Bruijnincx PC, van Es DS.
PMID: 26684008
Angew Chem Int Ed Engl. 2016 Jan 22;55(4):1368-71. doi: 10.1002/anie.201509346. Epub 2015 Dec 18.

Renewable aromatics can be conveniently synthesized from furanics by introducing an intermediate hydrogenation step in the Diels-Alder (DA) aromatization route, to effectively block retro-DA activity. Aromatization of the hydrogenated DA adducts requires tandem catalysis, using a metal-based dehydrogenation catalyst...

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Thiyagarajan S, Genuino HC, van der Waal JC, et al. A Facile Solid-Phase Route to Renewable Aromatic Chemicals from Biobased Furanics. Angew Chem Int Ed Engl. 2015;55(4):1368-71doi: 10.1002/anie.201509346.
Thiyagarajan, S., Genuino, H. C., van der Waal, J. C., de Jong, E., Weckhuysen, B. M., van Haveren, J., Bruijnincx, P. C., & van Es, D. S. (2016). A Facile Solid-Phase Route to Renewable Aromatic Chemicals from Biobased Furanics. Angewandte Chemie (International ed. in English), 55(4), 1368-71. https://doi.org/10.1002/anie.201509346
Thiyagarajan, Shanmugam, et al. "A Facile Solid-Phase Route to Renewable Aromatic Chemicals from Biobased Furanics." Angewandte Chemie (International ed. in English) vol. 55,4 (2016): 1368-71. doi: https://doi.org/10.1002/anie.201509346
Thiyagarajan S, Genuino HC, van der Waal JC, de Jong E, Weckhuysen BM, van Haveren J, Bruijnincx PC, van Es DS. A Facile Solid-Phase Route to Renewable Aromatic Chemicals from Biobased Furanics. Angew Chem Int Ed Engl. 2016 Jan 22;55(4):1368-71. doi: 10.1002/anie.201509346. Epub 2015 Dec 18. PMID: 26684008; PMCID: PMC4737293.
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Vitamin D3 Induces Tolerance in Human Dendritic Cells by Activation of Intracellular Metabolic Pathways.

Cell reports

Ferreira GB, Vanherwegen AS, Eelen G, Gutiérrez ACF, Van Lommel L, Marchal K, Verlinden L, Verstuyf A, Nogueira T, Georgiadou M, Schuit F, Eizirik DL, Gysemans C, Carmeliet P, Overbergh L, Mathieu C.
PMID: 25660022
Cell Rep. 2015 Feb 10;10(5):711-725. doi: 10.1016/j.celrep.2015.01.013. Epub 2015 Feb 07.

Metabolic switches in various immune cell subsets enforce phenotype and function. In the present study, we demonstrate that the active form of vitamin D, 1,25-dihydroxyvitamin D

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Ferreira GB, Vanherwegen AS, Eelen G, et al. Vitamin D3 Induces Tolerance in Human Dendritic Cells by Activation of Intracellular Metabolic Pathways. Cell Rep. 2015;10(5):711-725doi: 10.1016/j.celrep.2015.01.013.
Ferreira, G. B., Vanherwegen, A. S., Eelen, G., Gutiérrez, A. C. F., Van Lommel, L., Marchal, K., Verlinden, L., Verstuyf, A., Nogueira, T., Georgiadou, M., Schuit, F., Eizirik, D. L., Gysemans, C., Carmeliet, P., Overbergh, L., & Mathieu, C. (2015). Vitamin D3 Induces Tolerance in Human Dendritic Cells by Activation of Intracellular Metabolic Pathways. Cell reports, 10(5), 711-725. https://doi.org/10.1016/j.celrep.2015.01.013
Ferreira, Gabriela Bomfim, et al. "Vitamin D3 Induces Tolerance in Human Dendritic Cells by Activation of Intracellular Metabolic Pathways." Cell reports vol. 10,5 (2015): 711-725. doi: https://doi.org/10.1016/j.celrep.2015.01.013
Ferreira GB, Vanherwegen AS, Eelen G, Gutiérrez ACF, Van Lommel L, Marchal K, Verlinden L, Verstuyf A, Nogueira T, Georgiadou M, Schuit F, Eizirik DL, Gysemans C, Carmeliet P, Overbergh L, Mathieu C. Vitamin D3 Induces Tolerance in Human Dendritic Cells by Activation of Intracellular Metabolic Pathways. Cell Rep. 2015 Feb 10;10(5):711-725. doi: 10.1016/j.celrep.2015.01.013. Epub 2015 Feb 07. PMID: 25660022.
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Automatic speech analysis for the assessment of patients with predementia and Alzheimer's disease.

Alzheimer's & dementia (Amsterdam, Netherlands)

König A, Satt A, Sorin A, Hoory R, Toledo-Ronen O, Derreumaux A, Manera V, Verhey F, Aalten P, Robert PH, David R.
PMID: 27239498
Alzheimers Dement (Amst). 2015 Mar 29;1(1):112-24. doi: 10.1016/j.dadm.2014.11.012. eCollection 2015 Mar.

BACKGROUND: To evaluate the interest of using automatic speech analyses for the assessment of mild cognitive impairment (MCI) and early-stage Alzheimer's disease (AD).METHODS: Healthy elderly control (HC) subjects and patients with MCI or AD were recorded while performing several...

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König A, Satt A, Sorin A, et al. Automatic speech analysis for the assessment of patients with predementia and Alzheimer's disease. Alzheimers Dement (Amst). 2015;1(1):112-24doi: 10.1016/j.dadm.2014.11.012.
König, A., Satt, A., Sorin, A., Hoory, R., Toledo-Ronen, O., Derreumaux, A., Manera, V., Verhey, F., Aalten, P., Robert, P. H., & David, R. (2015). Automatic speech analysis for the assessment of patients with predementia and Alzheimer's disease. Alzheimer's & dementia (Amsterdam, Netherlands), 1(1), 112-24. https://doi.org/10.1016/j.dadm.2014.11.012
König, Alexandra, et al. "Automatic speech analysis for the assessment of patients with predementia and Alzheimer's disease." Alzheimer's & dementia (Amsterdam, Netherlands) vol. 1,1 (2015): 112-24. doi: https://doi.org/10.1016/j.dadm.2014.11.012
König A, Satt A, Sorin A, Hoory R, Toledo-Ronen O, Derreumaux A, Manera V, Verhey F, Aalten P, Robert PH, David R. Automatic speech analysis for the assessment of patients with predementia and Alzheimer's disease. Alzheimers Dement (Amst). 2015 Mar 29;1(1):112-24. doi: 10.1016/j.dadm.2014.11.012. eCollection 2015 Mar. PMID: 27239498; PMCID: PMC4876915.
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The effect of exogenous gangliosides on neurons in culture: A morphometric analysis.

International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience

Massarelli R, Ferret B, Gorio A, Durand M, Dreyfus H.
PMID: 24874859
Int J Dev Neurosci. 1985;3(4):341-8. doi: 10.1016/0736-5748(85)90067-X.

Cultures of isolated neurons have been treated with a purified preparation of gangliosides (10(-5)M and 10(-9)M) added to the cell growth medium at the 3rd day in culture and a morphometric analysis of the cells was performed with an...

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Massarelli R, Ferret B, Gorio A, et al. The effect of exogenous gangliosides on neurons in culture: A morphometric analysis. Int J Dev Neurosci. 1985;3(4):341-8doi: 10.1016/0736-5748(85)90067-X.
Massarelli, R., Ferret, B., Gorio, A., Durand, M., & Dreyfus, H. (1985). The effect of exogenous gangliosides on neurons in culture: A morphometric analysis. International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience, 3(4), 341-8. https://doi.org/10.1016/0736-5748(85)90067-X
Massarelli, R, et al. "The effect of exogenous gangliosides on neurons in culture: A morphometric analysis." International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience vol. 3,4 (1985): 341-8. doi: https://doi.org/10.1016/0736-5748(85)90067-X
Massarelli R, Ferret B, Gorio A, Durand M, Dreyfus H. The effect of exogenous gangliosides on neurons in culture: A morphometric analysis. Int J Dev Neurosci. 1985;3(4):341-8. doi: 10.1016/0736-5748(85)90067-X. PMID: 24874859.
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Shifting the Reactivity of Bis-propargyl Ethers from Garratt-Braverman Cyclization Mode to 1,5-H Shift Pathway To Yield 3,4-Disubstituted Furans: A Combined Experimental and Computational Study.

The Journal of organic chemistry

Das J, Das E, Jana S, Addy PS, Anoop A, Basak A.
PMID: 26675334
J Org Chem. 2016 Jan 15;81(2):450-7. doi: 10.1021/acs.joc.5b02246. Epub 2015 Dec 28.

Aryl or vinyl substituted bis-propargyl ethers upon base treatment generally form phthalans via the Garratt-Braverman (GB) cyclization pathway. In a major departure from this usual route, several aryl/vinyl bis-propargyl ethers with one of the acetylenic arms ending up with...

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Das J, Das E, Jana S, et al. Shifting the Reactivity of Bis-propargyl Ethers from Garratt-Braverman Cyclization Mode to 1,5-H Shift Pathway To Yield 3,4-Disubstituted Furans: A Combined Experimental and Computational Study. J Org Chem. 2015;81(2):450-7doi: 10.1021/acs.joc.5b02246.
Das, J., Das, E., Jana, S., Addy, P. S., Anoop, A., & Basak, A. (2016). Shifting the Reactivity of Bis-propargyl Ethers from Garratt-Braverman Cyclization Mode to 1,5-H Shift Pathway To Yield 3,4-Disubstituted Furans: A Combined Experimental and Computational Study. The Journal of organic chemistry, 81(2), 450-7. https://doi.org/10.1021/acs.joc.5b02246
Das, Joyee, et al. "Shifting the Reactivity of Bis-propargyl Ethers from Garratt-Braverman Cyclization Mode to 1,5-H Shift Pathway To Yield 3,4-Disubstituted Furans: A Combined Experimental and Computational Study." The Journal of organic chemistry vol. 81,2 (2016): 450-7. doi: https://doi.org/10.1021/acs.joc.5b02246
Das J, Das E, Jana S, Addy PS, Anoop A, Basak A. Shifting the Reactivity of Bis-propargyl Ethers from Garratt-Braverman Cyclization Mode to 1,5-H Shift Pathway To Yield 3,4-Disubstituted Furans: A Combined Experimental and Computational Study. J Org Chem. 2016 Jan 15;81(2):450-7. doi: 10.1021/acs.joc.5b02246. Epub 2015 Dec 28. PMID: 26675334.
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Discontinuities Between Health Technology Assessment (HTA) and Health Care Service Objectives of the NHS.

Value in health : the journal of the International Society for Pharmacoeconomics and Outcomes Research

Brazier PJ, Durand A, Tierney R, Kelly S.
PMID: 27201237
Value Health. 2014 Nov;17(7):A450. doi: 10.1016/j.jval.2014.08.1210. Epub 2014 Oct 26.

No abstract available.

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Brazier PJ, Durand A, Tierney R, et al. Discontinuities Between Health Technology Assessment (HTA) and Health Care Service Objectives of the NHS. Value Health. 2014;17(7):A450doi: 10.1016/j.jval.2014.08.1210.
Brazier, P. J., Durand, A., Tierney, R., & Kelly, S. (2014). Discontinuities Between Health Technology Assessment (HTA) and Health Care Service Objectives of the NHS. Value in health : the journal of the International Society for Pharmacoeconomics and Outcomes Research, 17(7), A450. https://doi.org/10.1016/j.jval.2014.08.1210
Brazier, P J, et al. "Discontinuities Between Health Technology Assessment (HTA) and Health Care Service Objectives of the NHS." Value in health : the journal of the International Society for Pharmacoeconomics and Outcomes Research vol. 17,7 (2014): A450. doi: https://doi.org/10.1016/j.jval.2014.08.1210
Brazier PJ, Durand A, Tierney R, Kelly S. Discontinuities Between Health Technology Assessment (HTA) and Health Care Service Objectives of the NHS. Value Health. 2014 Nov;17(7):A450. doi: 10.1016/j.jval.2014.08.1210. Epub 2014 Oct 26. PMID: 27201237.
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A novel regulation of PD-1 ligands on mesenchymal stromal cells through MMP-mediated proteolytic cleavage.

Oncoimmunology

Dezutter-Dambuyant C, Durand I, Alberti L, Bendriss-Vermare N, Valladeau-Guilemond J, Duc A, Magron A, Morel AP, Sisirak V, Rodriguez C, Cox D, Olive D, Caux C.
PMID: 27141350
Oncoimmunology. 2015 Oct 29;5(3):e1091146. doi: 10.1080/2162402X.2015.1091146. eCollection 2016 Mar.

Whether fibroblasts regulate immune response is a crucial issue in the modulation of inflammatory responses. Herein, we demonstrate that foreskin fibroblasts (FFs) potently inhibit CD3

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Dezutter-Dambuyant C, Durand I, Alberti L, et al. A novel regulation of PD-1 ligands on mesenchymal stromal cells through MMP-mediated proteolytic cleavage. Oncoimmunology. 2015;5(3):e1091146doi: 10.1080/2162402X.2015.1091146.
Dezutter-Dambuyant, C., Durand, I., Alberti, L., Bendriss-Vermare, N., Valladeau-Guilemond, J., Duc, A., Magron, A., Morel, A. P., Sisirak, V., Rodriguez, C., Cox, D., Olive, D., & Caux, C. (2016). A novel regulation of PD-1 ligands on mesenchymal stromal cells through MMP-mediated proteolytic cleavage. Oncoimmunology, 5(3), e1091146. https://doi.org/10.1080/2162402X.2015.1091146
Dezutter-Dambuyant, Colette, et al. "A novel regulation of PD-1 ligands on mesenchymal stromal cells through MMP-mediated proteolytic cleavage." Oncoimmunology vol. 5,3 (2016): e1091146. doi: https://doi.org/10.1080/2162402X.2015.1091146
Dezutter-Dambuyant C, Durand I, Alberti L, Bendriss-Vermare N, Valladeau-Guilemond J, Duc A, Magron A, Morel AP, Sisirak V, Rodriguez C, Cox D, Olive D, Caux C. A novel regulation of PD-1 ligands on mesenchymal stromal cells through MMP-mediated proteolytic cleavage. Oncoimmunology. 2015 Oct 29;5(3):e1091146. doi: 10.1080/2162402X.2015.1091146. eCollection 2016 Mar. PMID: 27141350; PMCID: PMC4839348.
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