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309 metagenome assembled microbial genomes from deep sediment samples in the Gulfs of Kathiawar Peninsula.

Scientific data

Nathani NM, Dave KJ, Vatsa PP, Mahajan MS, Sharma P, Mootapally C.
PMID: 34321485
Sci Data. 2021 Jul 28;8(1):194. doi: 10.1038/s41597-021-00957-0.

Prokaryoplankton genomes from the deep marine sediments are less explored compared to shallow shore sediments. The Gulfs of Kathiawar peninsula experience varied currents and inputs from different on-shore activities. Any perturbations would directly influence the microbiome and their normal...

An updated map of Trypanosoma cruzi histone post-translational modifications.

Scientific data

de Almeida RF, Fernandes M, de Godoy LMF.
PMID: 33767201
Sci Data. 2021 Mar 25;8(1):93. doi: 10.1038/s41597-021-00818-w.

In humans and other eukaryotes, histone post-translational modifications (hPTMs) play an essential role in the epigenetic control of gene expression. In trypanosomatid parasites, conversely, gene regulation occurs mainly at the post-transcriptional level. However, our group has recently shown that...

AI-assisted tracking of worldwide non-pharmaceutical interventions for COVID-19.

Scientific data

Suryanarayanan P, Tsou CH, Poddar A, Mahajan D, Dandala B, Madan P, Agrawal A, Wachira C, Samuel OM, Bar-Shira O, Kipchirchir C, Okwako S, Ogallo W, Otieno F, Nyota T, Matu F, Barros VR, Shats D, Kagan O, Remy S, Bent O, Guhan P, Mahatma S, Walcott-Bryant A, Pathak D, Rosen-Zvi M.
PMID: 33767205
Sci Data. 2021 Mar 25;8(1):94. doi: 10.1038/s41597-021-00878-y.

The Coronavirus disease 2019 (COVID-19) global pandemic has transformed almost every facet of human society throughout the world. Against an emerging, highly transmissible disease, governments worldwide have implemented non-pharmaceutical interventions (NPIs) to slow the spread of the virus. Examples...

ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis.

Scientific data

Imbert A, Rompais M, Selloum M, Castelli F, Mouton-Barbosa E, Brandolini-Bunlon M, Chu-Van E, Joly C, Hirschler A, Roger P, Burger T, Leblanc S, Sorg T, Ouzia S, Vandenbrouck Y, Médigue C, Junot C, Ferro M, Pujos-Guillot E, de Peredo AG, Fenaille F, Carapito C, Herault Y, Thévenot EA.
PMID: 34862403
Sci Data. 2021 Dec 03;8(1):311. doi: 10.1038/s41597-021-01095-3.

Genes are pleiotropic and getting a better knowledge of their function requires a comprehensive characterization of their mutants. Here, we generated multi-level data combining phenomic, proteomic and metabolomic acquisitions from plasma and liver tissues of two C57BL/6 N mouse...

Chromosome-scale assembly and high-density genetic map of the yellow drum, Nibea albiflora.

Scientific data

Xu D, Zhang W, Chen R, Song H, Tian L, Tan P, Wang L, Zhu Q, Wu B, Lou B, Min J, Zhou J.
PMID: 34654820
Sci Data. 2021 Oct 15;8(1):268. doi: 10.1038/s41597-021-01045-z.

The yellow drum (Nibea albiflora) is an economically important sciaenid fish in East Asian countries. In this study, we sequenced and assembled a near-complete gynogenetic yellow drum genome. We generated 45.63 Gb of Illumina short-reads and 80.27 Gb of...

An open science resource for establishing reliability and reproducibility in functional connectomics.

Scientific data

Zuo XN, Anderson JS, Bellec P, Birn RM, Biswal BB, Blautzik J, Breitner JC, Buckner RL, Calhoun VD, Castellanos FX, Chen A, Chen B, Chen J, Chen X, Colcombe SJ, Courtney W, Craddock RC, Di Martino A, Dong HM, Fu X, Gong Q, Gorgolewski KJ, Han Y, He Y, He Y, Ho E, Holmes A, Hou XH, Huckins J, Jiang T, Jiang Y, Kelley W, Kelly C, King M, LaConte SM, Lainhart JE, Lei X, Li HJ, Li K, Li K, Lin Q, Liu D, Liu J, Liu X, Liu Y, Lu G, Lu J, Luna B, Luo J, Lurie D, Mao Y, Margulies DS, Mayer AR, Meindl T, Meyerand ME, Nan W, Nielsen JA, O'Connor D, Paulsen D, Prabhakaran V, Qi Z, Qiu J, Shao C, Shehzad Z, Tang W, Villringer A, Wang H, Wang K, Wei D, Wei GX, Weng XC, Wu X, Xu T, Yang N, Yang Z, Zang YF, Zhang L, Zhang Q, Zhang Z, Zhang Z, Zhao K, Zhen Z, Zhou Y, Zhu XT, Milham MP.
PMID: 25977800
Sci Data. 2014 Dec 09;1:140049. doi: 10.1038/sdata.2014.49. eCollection 2014.

Efforts to identify meaningful functional imaging-based biomarkers are limited by the ability to reliably characterize inter-individual differences in human brain function. Although a growing number of connectomics-based measures are reported to have moderate to high test-retest reliability, the variability...

Whole-exome and whole-transcriptome sequencing of canine mammary gland tumors.

Scientific data

Kim KK, Seung BJ, Kim D, Park HM, Lee S, Song DW, Lee G, Cheong JH, Nam H, Sur JH, Kim S.
PMID: 31413331
Sci Data. 2019 Aug 14;6(1):147. doi: 10.1038/s41597-019-0149-8.

Studies of naturally occurring cancers in dogs, which share many genetic and environmental factors with humans, provide valuable information as a comparative model for studying the mechanisms of human cancer pathogenesis. While individual and small-scale studies of canine cancers...

SCSPOD14, a South China Sea physical oceanographic dataset derived from in situ measurements during 1919-2014.

Scientific data

Zeng L, Wang D, Chen J, Wang W, Chen R.
PMID: 27116565
Sci Data. 2016 Apr 26;3:160029. doi: 10.1038/sdata.2016.29.

In addition to the oceanographic data available for the South China Sea (SCS) from the World Ocean Database (WOD) and Array for Real-time Geostrophic Oceanography (Argo) floats, a suite of observations has been made by the South China Sea...

Showing 1369 to 1376 of 1376 entries