Display options
Cite
Gao C, Xia J, Zhou X, et al. Viral Characteristics of the Warm Atlantic and Cold Arctic Water Masses in the Nordic Seas. Appl Environ Microbiol. 2021;87(22):e0116021doi: 10.1128/AEM.01160-21.
Gao, C., Xia, J., Zhou, X., Liang, Y., Jiang, Y., Wang, M., Shao, H., Shi, X., Guo, C., He, H., Wang, H., He, J., Hu, D., Wang, X., Zhao, J., Zhang, Y. Z., Sung, Y. Y., Mok, W. J., Wong, L. L., McMinn, A., Suttle, C. A., & Wang, M. (2021). Viral Characteristics of the Warm Atlantic and Cold Arctic Water Masses in the Nordic Seas. Applied and environmental microbiology, 87(22), e0116021. https://doi.org/10.1128/AEM.01160-21
Gao, Chen, et al. "Viral Characteristics of the Warm Atlantic and Cold Arctic Water Masses in the Nordic Seas." Applied and environmental microbiology vol. 87,22 (2021): e0116021. doi: https://doi.org/10.1128/AEM.01160-21
Gao C, Xia J, Zhou X, Liang Y, Jiang Y, Wang M, Shao H, Shi X, Guo C, He H, Wang H, He J, Hu D, Wang X, Zhao J, Zhang YZ, Sung YY, Mok WJ, Wong LL, McMinn A, Suttle CA, Wang M. Viral Characteristics of the Warm Atlantic and Cold Arctic Water Masses in the Nordic Seas. Appl Environ Microbiol. 2021 Oct 28;87(22):e0116021. doi: 10.1128/AEM.01160-21. Epub 2021 Sep 01. PMID: 34469192; PMCID: PMC8552889.
Copy Download .nbib Format: NLM
Share it on

Appl Environ Microbiol. 2021 Oct 28;87(22):e0116021. doi: 10.1128/AEM.01160-21. Epub 2021 Sep 01.

Viral Characteristics of the Warm Atlantic and Cold Arctic Water Masses in the Nordic Seas.

Applied and environmental microbiology

Chen Gao, Jun Xia, Xinhao Zhou, Yantao Liang, Yong Jiang, Meiwen Wang, Hongbing Shao, Xiaochong Shi, Cui Guo, Hui He, Hualong Wang, Jianfeng He, Denghui Hu, Xiaoyu Wang, Jinping Zhao, Yu-Zhong Zhang, Yeong Yik Sung, Wen Jye Mok, Li Lian Wong, Andrew McMinn, Curtis A Suttle, Min Wang

Affiliations

  1. College of Marine Life Sciences, Key Lab of Polar Oceanography and Global Ocean Change, Institute of Evolution and Marine Biodiversity, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of Chinagrid.4422.0, Qingdao, China.
  2. UMT-OUC Joint Centre for Marine Studies, Qingdao, China.
  3. SOA Key Laboratory for Polar Science, Polar Research Institute of China, Shanghai, China.
  4. CAS Key Laboratory of Ocean Circulation and Waves, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.
  5. Key Lab of Polar Oceanography and Global Ocean Change, Ocean University of Chinagrid.4422.0, Qingdao, China.
  6. College of Marine Life Sciences and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao, China.
  7. State Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Shandong University, Qingdao, China.
  8. Institute of Marine Biotechnology, Universiti Malaysia Terengganugrid.412255.5, Kuala Nerus, Malaysia.
  9. Institute for Marine and Antarctic Studies, University of Tasmaniagrid.1009.8, Hobart, Tasmania, Australia.
  10. Departments of Earth, Ocean and Atmospheric Sciences, Microbiology and Immunology, and Botany and Institute for the Oceans and Fisheries, The University of British Columbiagrid.17091.3e, Vancouver, British Columbia, Canada.
  11. The Affiliated Hospital of Qingdao University, Qingdao, China.

PMID: 34469192 PMCID: PMC8552889 DOI: 10.1128/AEM.01160-21

Abstract

Nordic Seas are the subarctic seas connecting the Arctic Ocean and North Atlantic Ocean with complex water masses, experiencing an abrupt climate change. Though knowledge of the marine virosphere has expanded rapidly, the diversity of viruses and their relationships with host cells and water masses in the Nordic Seas remain to be fully revealed. Here, we establish the Nordic Sea DNA virome (NSV) data set of 55,315 viral contigs including 1,478 unique viral populations from seven stations influenced by both the warm Atlantic and cold Arctic water masses.

Keywords: DNA virome; Nordic Seas; metagenomics; microbial community; water masses and currents

References

  1. Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14250-5 - PubMed
  2. Proc Natl Acad Sci U S A. 2013 Jul 30;110(31):12798-803 - PubMed
  3. Nature. 2020 Feb;578(7795):432-436 - PubMed
  4. Proc Natl Acad Sci U S A. 2010 Nov 9;107(45):19508-13 - PubMed
  5. Ann Rev Mar Sci. 2010;2:305-31 - PubMed
  6. Med Sci (Paris). 2014 Mar;30(3):329-31 - PubMed
  7. Virol J. 2011 Jun 09;8:287 - PubMed
  8. PLoS One. 2015 Aug 25;10(8):e0136741 - PubMed
  9. Ecol Lett. 2019 Jan;22(1):56-66 - PubMed
  10. Bioinformatics. 2006 Jul 1;22(13):1658-9 - PubMed
  11. Adv Virus Res. 2019;103:167-202 - PubMed
  12. BMC Bioinformatics. 2014 Mar 19;15:76 - PubMed
  13. Front Microbiol. 2019 Aug 21;10:1801 - PubMed
  14. Proc Natl Acad Sci U S A. 2013 Jul 23;110(30):12343-8 - PubMed
  15. Nat Biotechnol. 2019 Jan;37(1):29-37 - PubMed
  16. Environ Microbiol. 2009 Jul;11(7):1752-66 - PubMed
  17. Nucleic Acids Res. 2021 Jan 8;49(D1):D764-D775 - PubMed
  18. Nature. 2016 Dec 7;540(7632):288-291 - PubMed
  19. J Virol. 2010 Dec;84(24):12555-63 - PubMed
  20. Science. 2015 May 22;348(6237):1261498 - PubMed
  21. Cell. 2019 Nov 14;179(5):1068-1083.e21 - PubMed
  22. PLoS One. 2013;8(2):e57355 - PubMed
  23. Nucleic Acids Res. 2019 Jan 8;47(D1):D678-D686 - PubMed
  24. Microbiol Mol Biol Rev. 2000 Mar;64(1):69-114 - PubMed
  25. Viruses. 2018 Sep 18;10(9): - PubMed
  26. Science. 2016 Sep 30;353(6307):1532-1535 - PubMed
  27. Virology. 2012 Dec 20;434(2):181-6 - PubMed
  28. Nat Methods. 2013 Oct;10(10):996-8 - PubMed
  29. MethodsX. 2014 Sep 16;1:197-206 - PubMed
  30. Bioinformatics. 2011 Nov 1;27(21):2957-63 - PubMed
  31. Viruses. 2018 Dec 14;10(12): - PubMed
  32. Front Microbiol. 2019 Aug 23;10:1951 - PubMed
  33. Genome Res. 2008 May;18(5):821-9 - PubMed
  34. Environ Microbiol. 2016 Nov;18(11):3949-3961 - PubMed
  35. Mol Syst Biol. 2012 Jul 17;8:595 - PubMed
  36. Microbiome. 2014 Jan 30;2(1):3 - PubMed
  37. BMC Genomics. 2016 Mar 31;17:267 - PubMed
  38. Nature. 2016 Aug 25;536(7617):425-30 - PubMed
  39. BMC Bioinformatics. 2012 May 30;13:113 - PubMed
  40. PLoS One. 2008 Jan 23;3(1):e1456 - PubMed
  41. Nat Microbiol. 2016 Oct 26;1(11):16205 - PubMed
  42. PLoS One. 2012;7(10):e42047 - PubMed
  43. Nature. 2016 Sep 29;537(7622):689-693 - PubMed
  44. Mol Biol Evol. 2013 Dec;30(12):2725-9 - PubMed
  45. Sci Rep. 2016 Sep 08;6:33031 - PubMed
  46. Nucleic Acids Res. 2010 Jul;38(12):e132 - PubMed
  47. Nat Methods. 2012 Mar 04;9(4):357-9 - PubMed
  48. Cell. 2019 May 16;177(5):1109-1123.e14 - PubMed
  49. Environ Microbiol. 2016 Apr;18(4):1162-75 - PubMed
  50. Nat Rev Microbiol. 2015 Mar;13(3):147-59 - PubMed
  51. Nucleic Acids Res. 2012 Nov 1;40(20):e155 - PubMed
  52. mBio. 2010 Oct 05;1(4): - PubMed
  53. Nature. 2013 Feb 21;494(7437):357-60 - PubMed
  54. Genome Biol. 2008;9(7):R106 - PubMed
  55. Nat Rev Microbiol. 2010 Aug;8(8):593-9 - PubMed
  56. mBio. 2011 Jul 26;2(4): - PubMed
  57. ISME J. 2020 Jan;14(1):79-90 - PubMed
  58. Nat Rev Microbiol. 2007 Oct;5(10):801-12 - PubMed
  59. Trends Ecol Evol. 2014 Jan;29(1):42-50 - PubMed
  60. Front Microbiol. 2018 Dec 03;9:2981 - PubMed
  61. Nat Commun. 2020 Apr 6;11(1):1710 - PubMed
  62. Environ Microbiol. 2008 Sep;10(9):2397-410 - PubMed
  63. Nat Protoc. 2009;4(4):470-83 - PubMed
  64. Science. 2009 Oct 23;326(5952):539 - PubMed
  65. Bioinformatics. 2009 Aug 15;25(16):2078-9 - PubMed
  66. Science. 2015 May 22;348(6237):1261359 - PubMed
  67. Nature. 2005 Sep 15;437(7057):356-61 - PubMed
  68. Viruses. 2019 Jan 24;11(2): - PubMed
  69. PLoS Biol. 2006 Nov;4(11):e368 - PubMed
  70. Appl Environ Microbiol. 2009 Aug;75(15):4958-66 - PubMed
  71. Nucleic Acids Res. 2016 Jan 4;44(D1):D733-45 - PubMed
  72. PLoS One. 2014 Jun 24;9(6):e100600 - PubMed
  73. Viruses. 2019 Nov 09;11(11): - PubMed
  74. Proc Natl Acad Sci U S A. 2013 Jun 11;110(24):9824-9 - PubMed
  75. BMC Genomics. 2011 Sep 07;12:444 - PubMed
  76. Nature. 2016 Apr 28;532(7600):465-470 - PubMed
  77. J Mol Biol. 1990 Oct 5;215(3):403-10 - PubMed
  78. Proc Natl Acad Sci U S A. 2014 Mar 18;111(11):4274-9 - PubMed
  79. Science. 2013 Jul 19;341(6143):281-6 - PubMed

MeSH terms

Publication Types