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An improved workflow for quantitative N‐terminal charge‐based fractional diagonal chromatography (ChaFRADIC) to study proteolytic events in Arabidopsis thaliana

science campus

[No authors listed]
GSID: TwIp04NPb3oJ
AS Venne, FA Solari, F Faden, T Paretti… - …, 2015 - Wiley Online Library

We applied an extended charge‐based fractional diagonal chromatography (ChaFRADIC) workflow to analyze the N‐terminal proteome of Arabidopsis thaliana seedlings. Using iTRAQ protein labeling and a multi‐enzyme digestion approach including trypsin, GluC, and …

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Venne, A. S., Solari, F. A., Faden, F., Paretti, T., Dissmeyer, N., & Zahedi, R. P. (2015). An improved workflow for quantitative N‐terminal charge‐based fractional diagonal chromatography (ChaFRADIC) to study proteolytic events in Arabidopsis thaliana. Proteomics, 15(14), 2458-2469.
Venne, A. Saskia, et al. "An improved workflow for quantitative N‐terminal charge‐based fractional diagonal chromatography (ChaFRADIC) to study proteolytic events in Arabidopsis thaliana." Proteomics 15.14 (2015): 2458-2469.
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The effects of oral hydrolytic enzymes and flavonoids on inflammatory markers and coagulation after marathon running: study protocol for a randomized, double-blind, placebo-controlled trial.

BMC sports science, medicine & rehabilitation

Grabs V, Nieman DC, Haller B, Halle M, Scherr J.
PMID: 24559067
BMC Sports Sci Med Rehabil. 2014 Feb 22;6(1):8. doi: 10.1186/2052-1847-6-8.

BACKGROUND: Regular moderate intensity physical activity positively influences the immune system with a lower incidence of upper respiratory tract infections (URTI) and lower levels of pro-inflammatory markers. However, marathon running due to its strenuous and prolonged nature results in...

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Grabs V, Nieman DC, Haller B, et al. The effects of oral hydrolytic enzymes and flavonoids on inflammatory markers and coagulation after marathon running: study protocol for a randomized, double-blind, placebo-controlled trial. BMC Sports Sci Med Rehabil. 2014;6(1):8doi: 10.1186/2052-1847-6-8.
Grabs, V., Nieman, D. C., Haller, B., Halle, M., & Scherr, J. (2014). The effects of oral hydrolytic enzymes and flavonoids on inflammatory markers and coagulation after marathon running: study protocol for a randomized, double-blind, placebo-controlled trial. BMC sports science, medicine & rehabilitation, 6(1), 8. https://doi.org/10.1186/2052-1847-6-8
Grabs, Viola, et al. "The effects of oral hydrolytic enzymes and flavonoids on inflammatory markers and coagulation after marathon running: study protocol for a randomized, double-blind, placebo-controlled trial." BMC sports science, medicine & rehabilitation vol. 6,1 (2014): 8. doi: https://doi.org/10.1186/2052-1847-6-8
Grabs V, Nieman DC, Haller B, Halle M, Scherr J. The effects of oral hydrolytic enzymes and flavonoids on inflammatory markers and coagulation after marathon running: study protocol for a randomized, double-blind, placebo-controlled trial. BMC Sports Sci Med Rehabil. 2014 Feb 22;6(1):8. doi: 10.1186/2052-1847-6-8. PMID: 24559067; PMCID: PMC3945524.
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Pancreas procurement and preservation for islet transplantation: personal considerations.

Journal of transplantation

Noguchi H.
PMID: 21918716
J Transplant. 2011;2011:783168. doi: 10.1155/2011/783168. Epub 2011 Sep 12.

Pancreatic islet transplantation is a promising option for the treatment of type 1 diabetic patients. After the successful demonstration of the Edmonton protocol, islet transplantation has advanced significantly on several fronts, including improved pancreas procurement and preservation systems. Since...

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Noguchi H. Pancreas procurement and preservation for islet transplantation: personal considerations. J Transplant. 2011;2011:783168doi: 10.1155/2011/783168.
Noguchi, H. (2011). Pancreas procurement and preservation for islet transplantation: personal considerations. Journal of transplantation, 2011783168. https://doi.org/10.1155/2011/783168
Noguchi, Hirofumi. "Pancreas procurement and preservation for islet transplantation: personal considerations." Journal of transplantation vol. 2011 (2011): 783168. doi: https://doi.org/10.1155/2011/783168
Noguchi H. Pancreas procurement and preservation for islet transplantation: personal considerations. J Transplant. 2011;2011:783168. doi: 10.1155/2011/783168. Epub 2011 Sep 12. PMID: 21918716; PMCID: PMC3171759.
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Culture conditions for bovine embryonic stem cell-like cells isolated from blastocysts after external fertilization.

Cytotechnology

Jin M, Wu A, Dorzhin S, Yue Q, Ma Y, Liu D.
PMID: 22438181
Cytotechnology. 2012 Aug;64(4):379-89. doi: 10.1007/s10616-011-9408-z. Epub 2012 Mar 22.

Although isolation and characterization of embryonic stem cells have been successful in cattle, maintenance of bovine embryonic stem cells in culture remains difficult. In this study, we compared different methods of cell passaging, feeder cell layers and medium conditions...

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Jin M, Wu A, Dorzhin S, et al. Culture conditions for bovine embryonic stem cell-like cells isolated from blastocysts after external fertilization. Cytotechnology. 2012;64(4):379-89doi: 10.1007/s10616-011-9408-z.
Jin, M., Wu, A., Dorzhin, S., Yue, Q., Ma, Y., & Liu, D. (2012). Culture conditions for bovine embryonic stem cell-like cells isolated from blastocysts after external fertilization. Cytotechnology, 64(4), 379-89. https://doi.org/10.1007/s10616-011-9408-z
Jin, Muzi, et al. "Culture conditions for bovine embryonic stem cell-like cells isolated from blastocysts after external fertilization." Cytotechnology vol. 64,4 (2012): 379-89. doi: https://doi.org/10.1007/s10616-011-9408-z
Jin M, Wu A, Dorzhin S, Yue Q, Ma Y, Liu D. Culture conditions for bovine embryonic stem cell-like cells isolated from blastocysts after external fertilization. Cytotechnology. 2012 Aug;64(4):379-89. doi: 10.1007/s10616-011-9408-z. Epub 2012 Mar 22. PMID: 22438181; PMCID: PMC3397107.
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The effect of culture on the neuronotrophic activity of avian smooth muscle.

International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience

Abrahamson IK, Murdoch SY, Rush RA.
PMID: 24874037
Int J Dev Neurosci. 1984;2(3):229-39. doi: 10.1016/0736-5748(84)90017-0.

The expansor secundariorum is a smooth muscle of the chicken wing which receives a dense noradrenergic innervation and contains high concentrations of trophic activity for sympathetic neurons. Expansor cells were dissociated in trypsin and grown to confluency in standard...

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Abrahamson IK, Murdoch SY, Rush RA. The effect of culture on the neuronotrophic activity of avian smooth muscle. Int J Dev Neurosci. 1984;2(3):229-39doi: 10.1016/0736-5748(84)90017-0.
Abrahamson, I. K., Murdoch, S. Y., & Rush, R. A. (1984). The effect of culture on the neuronotrophic activity of avian smooth muscle. International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience, 2(3), 229-39. https://doi.org/10.1016/0736-5748(84)90017-0
Abrahamson, I K, et al. "The effect of culture on the neuronotrophic activity of avian smooth muscle." International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience vol. 2,3 (1984): 229-39. doi: https://doi.org/10.1016/0736-5748(84)90017-0
Abrahamson IK, Murdoch SY, Rush RA. The effect of culture on the neuronotrophic activity of avian smooth muscle. Int J Dev Neurosci. 1984;2(3):229-39. doi: 10.1016/0736-5748(84)90017-0. PMID: 24874037.
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Real-time Crystal Growth Visualization and Quantification by Energy-Resolved Neutron Imaging.

Scientific reports

Tremsin AS, Perrodin D, Losko AS, Vogel SC, Bourke MAM, Bizarri GA, Bourret ED.
PMID: 28425461
Sci Rep. 2017 Apr 20;7:46275. doi: 10.1038/srep46275.

Energy-resolved neutron imaging is investigated as a real-time diagnostic tool for visualization and in-situ measurements of "blind" processes. This technique is demonstrated for the Bridgman-type crystal growth enabling remote and direct measurements of growth parameters crucial for process optimization....

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Tremsin AS, Perrodin D, Losko AS, et al. Real-time Crystal Growth Visualization and Quantification by Energy-Resolved Neutron Imaging. Sci Rep. 2017;7:46275doi: 10.1038/srep46275.
Tremsin, A. S., Perrodin, D., Losko, A. S., Vogel, S. C., Bourke, M. A. M., Bizarri, G. A., & Bourret, E. D. (2017). Real-time Crystal Growth Visualization and Quantification by Energy-Resolved Neutron Imaging. Scientific reports, 746275. https://doi.org/10.1038/srep46275
Tremsin, Anton S, et al. "Real-time Crystal Growth Visualization and Quantification by Energy-Resolved Neutron Imaging." Scientific reports vol. 7 (2017): 46275. doi: https://doi.org/10.1038/srep46275
Tremsin AS, Perrodin D, Losko AS, Vogel SC, Bourke MAM, Bizarri GA, Bourret ED. Real-time Crystal Growth Visualization and Quantification by Energy-Resolved Neutron Imaging. Sci Rep. 2017 Apr 20;7:46275. doi: 10.1038/srep46275. PMID: 28425461; PMCID: PMC5397867.
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Comparative evaluation of tannic acid inhibiting α-glucosidase and trypsin.

Food research international (Ottawa, Ont.)

Xiao H, Liu B, Mo H, Liang G.
PMID: 28455043
Food Res Int. 2015 Oct;76:605-610. doi: 10.1016/j.foodres.2015.07.029. Epub 2015 Jul 22.

In this work, the inhibitory effects of tannic acid on the α-glucosidase and trypsin were systematically evaluated by comparing with the clinical diabetes healer acarbose and the soybean-derived trypsin inhibitor using fluorescence spectroscopy and enzymatic kinetics methods. We showed...

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Xiao H, Liu B, Mo H, et al. Comparative evaluation of tannic acid inhibiting α-glucosidase and trypsin. Food Res Int. 2015;76:605-610doi: 10.1016/j.foodres.2015.07.029.
Xiao, H., Liu, B., Mo, H., & Liang, G. (2015). Comparative evaluation of tannic acid inhibiting α-glucosidase and trypsin. Food research international (Ottawa, Ont.), 76605-610. https://doi.org/10.1016/j.foodres.2015.07.029
Xiao, Huizhi, et al. "Comparative evaluation of tannic acid inhibiting α-glucosidase and trypsin." Food research international (Ottawa, Ont.) vol. 76 (2015): 605-610. doi: https://doi.org/10.1016/j.foodres.2015.07.029
Xiao H, Liu B, Mo H, Liang G. Comparative evaluation of tannic acid inhibiting α-glucosidase and trypsin. Food Res Int. 2015 Oct;76:605-610. doi: 10.1016/j.foodres.2015.07.029. Epub 2015 Jul 22. PMID: 28455043.
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Investigation of dissimilar metal welds by energy-resolved neutron imaging.

Journal of applied crystallography

Tremsin AS, Ganguly S, Meco SM, Pardal GR, Shinohara T, Feller WB.
PMID: 27504075
J Appl Crystallogr. 2016 Jun 09;49:1130-1140. doi: 10.1107/S1600576716006725. eCollection 2016 Aug 01.

A nondestructive study of the internal structure and compositional gradient of dissimilar metal-alloy welds through energy-resolved neutron imaging is described in this paper. The ability of neutrons to penetrate thick metal objects (up to several cm) provides a unique...

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Tremsin AS, Ganguly S, Meco SM, et al. Investigation of dissimilar metal welds by energy-resolved neutron imaging. J Appl Crystallogr. 2016;49:1130-1140doi: 10.1107/S1600576716006725.
Tremsin, A. S., Ganguly, S., Meco, S. M., Pardal, G. R., Shinohara, T., & Feller, W. B. (2016). Investigation of dissimilar metal welds by energy-resolved neutron imaging. Journal of applied crystallography, 491130-1140. https://doi.org/10.1107/S1600576716006725
Tremsin, Anton S, et al. "Investigation of dissimilar metal welds by energy-resolved neutron imaging." Journal of applied crystallography vol. 49 (2016): 1130-1140. doi: https://doi.org/10.1107/S1600576716006725
Tremsin AS, Ganguly S, Meco SM, Pardal GR, Shinohara T, Feller WB. Investigation of dissimilar metal welds by energy-resolved neutron imaging. J Appl Crystallogr. 2016 Jun 09;49:1130-1140. doi: 10.1107/S1600576716006725. eCollection 2016 Aug 01. PMID: 27504075; PMCID: PMC4970494.
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Introducing Mammalian Cell Culture and Cell Viability Techniques in the Undergraduate Biology Laboratory.

Journal of microbiology & biology education

Bowey-Dellinger K, Dixon L, Ackerman K, Vigueira C, Suh YK, Lyda T, Sapp K, Grider M, Crater D, Russell T, Elias M, Coffield VM, Segarra VA.
PMID: 28861134
J Microbiol Biol Educ. 2017 Aug 11;18(2). doi: 10.1128/jmbe.v18i2.1264. eCollection 2017.

Undergraduate students learn about mammalian cell culture applications in introductory biology courses. However, laboratory modules are rarely designed to provide hands-on experience with mammalian cells or teach cell culture techniques, such as trypsinization and cell counting. Students are more...

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Bowey-Dellinger K, Dixon L, Ackerman K, et al. Introducing Mammalian Cell Culture and Cell Viability Techniques in the Undergraduate Biology Laboratory. J Microbiol Biol Educ. 2017;18(2)doi: 10.1128/jmbe.v18i2.1264.
Bowey-Dellinger, K., Dixon, L., Ackerman, K., Vigueira, C., Suh, Y. K., Lyda, T., Sapp, K., Grider, M., Crater, D., Russell, T., Elias, M., Coffield, V. M., & Segarra, V. A. (2017). Introducing Mammalian Cell Culture and Cell Viability Techniques in the Undergraduate Biology Laboratory. Journal of microbiology & biology education, 18(2), . https://doi.org/10.1128/jmbe.v18i2.1264
Bowey-Dellinger, Kristen, et al. "Introducing Mammalian Cell Culture and Cell Viability Techniques in the Undergraduate Biology Laboratory." Journal of microbiology & biology education vol. 18,2 (2017). doi: https://doi.org/10.1128/jmbe.v18i2.1264
Bowey-Dellinger K, Dixon L, Ackerman K, Vigueira C, Suh YK, Lyda T, Sapp K, Grider M, Crater D, Russell T, Elias M, Coffield VM, Segarra VA. Introducing Mammalian Cell Culture and Cell Viability Techniques in the Undergraduate Biology Laboratory. J Microbiol Biol Educ. 2017 Aug 11;18(2). doi: 10.1128/jmbe.v18i2.1264. eCollection 2017. PMID: 28861134; PMCID: PMC5576768.
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Mass spectrometry-based analyses showing the effects of secretor and blood group status on salivary N-glycosylation.

Clinical proteomics

Albertolle ME, Hassis ME, Ng CJ, Cuison S, Williams K, Prakobphol A, Dykstra AB, Hall SC, Niles RK, Ewa Witkowska H, Fisher SJ.
PMID: 26719750
Clin Proteomics. 2015 Dec 30;12:29. doi: 10.1186/s12014-015-9100-y. eCollection 2015.

BACKGROUND: The carbohydrate portions of salivary glycoproteins play important roles, including mediating bacterial and leukocyte adhesion. Salivary glycosylation is complex. Many of its glycoproteins present ABO and Lewis blood group determinants. An individual's genetic complement and secretor status govern...

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Albertolle ME, Hassis ME, Ng CJ, et al. Mass spectrometry-based analyses showing the effects of secretor and blood group status on salivary N-glycosylation. Clin Proteomics. 2015;12:29doi: 10.1186/s12014-015-9100-y.
Albertolle, M. E., Hassis, M. E., Ng, C. J., Cuison, S., Williams, K., Prakobphol, A., Dykstra, A. B., Hall, S. C., Niles, R. K., Ewa Witkowska, H., & Fisher, S. J. (2015). Mass spectrometry-based analyses showing the effects of secretor and blood group status on salivary N-glycosylation. Clinical proteomics, 1229. https://doi.org/10.1186/s12014-015-9100-y
Albertolle, Matthew E, et al. "Mass spectrometry-based analyses showing the effects of secretor and blood group status on salivary N-glycosylation." Clinical proteomics vol. 12 (2015): 29. doi: https://doi.org/10.1186/s12014-015-9100-y
Albertolle ME, Hassis ME, Ng CJ, Cuison S, Williams K, Prakobphol A, Dykstra AB, Hall SC, Niles RK, Ewa Witkowska H, Fisher SJ. Mass spectrometry-based analyses showing the effects of secretor and blood group status on salivary N-glycosylation. Clin Proteomics. 2015 Dec 30;12:29. doi: 10.1186/s12014-015-9100-y. eCollection 2015. PMID: 26719750; PMCID: PMC4696288.
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Coarse-Graining the Accessible Surface and the Electrostatics of Proteins for Protein-Protein Interactions.

Journal of chemical theory and computation

Pizzitutti F, Marchi M, Borgis D.
PMID: 26627629
J Chem Theory Comput. 2007 Sep;3(5):1867-76. doi: 10.1021/ct700121n.

This study is concerned with the development and test of a coarse-grained representation specifically constructed for proteins and peptides, where each amino acid of the sequence is represented by a charged dipolar sphere. The model was parametrized from the...

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Pizzitutti F, Marchi M, Borgis D. Coarse-Graining the Accessible Surface and the Electrostatics of Proteins for Protein-Protein Interactions. J Chem Theory Comput. 2007;3(5):1867-76doi: 10.1021/ct700121n.
Pizzitutti, F., Marchi, M., & Borgis, D. (2007). Coarse-Graining the Accessible Surface and the Electrostatics of Proteins for Protein-Protein Interactions. Journal of chemical theory and computation, 3(5), 1867-76. https://doi.org/10.1021/ct700121n
Pizzitutti, Francesco, et al. "Coarse-Graining the Accessible Surface and the Electrostatics of Proteins for Protein-Protein Interactions." Journal of chemical theory and computation vol. 3,5 (2007): 1867-76. doi: https://doi.org/10.1021/ct700121n
Pizzitutti F, Marchi M, Borgis D. Coarse-Graining the Accessible Surface and the Electrostatics of Proteins for Protein-Protein Interactions. J Chem Theory Comput. 2007 Sep;3(5):1867-76. doi: 10.1021/ct700121n. PMID: 26627629.
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Necrotic Response to Low Pathogenic H9N2 Influenza Virus in Chicken Hepatoma Cells.

Jundishapur journal of microbiology

Mosavi SZ, Shahsavandi S, Ebrahimi MM, Hatami AR, Sadeghi K, Shahivandi H.
PMID: 25789133
Jundishapur J Microbiol. 2015 Jan 25;8(1):e13770. doi: 10.5812/jjm.13770. eCollection 2015 Jan.

BACKGROUND: Limited knowledge about the molecular mechanism of avian influenza H9N2 virus pathogenicity in birds as well as human hosts has limited the development of effective control against the disease. To overcome this issue detailed understanding of the infectious...

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Mosavi SZ, Shahsavandi S, Ebrahimi MM, et al. Necrotic Response to Low Pathogenic H9N2 Influenza Virus in Chicken Hepatoma Cells. Jundishapur J Microbiol. 2015;8(1):e13770doi: 10.5812/jjm.13770.
Mosavi, S. Z., Shahsavandi, S., Ebrahimi, M. M., Hatami, A. R., Sadeghi, K., & Shahivandi, H. (2015). Necrotic Response to Low Pathogenic H9N2 Influenza Virus in Chicken Hepatoma Cells. Jundishapur journal of microbiology, 8(1), e13770. https://doi.org/10.5812/jjm.13770
Mosavi, Seyedeh Zahra, et al. "Necrotic Response to Low Pathogenic H9N2 Influenza Virus in Chicken Hepatoma Cells." Jundishapur journal of microbiology vol. 8,1 (2015): e13770. doi: https://doi.org/10.5812/jjm.13770
Mosavi SZ, Shahsavandi S, Ebrahimi MM, Hatami AR, Sadeghi K, Shahivandi H. Necrotic Response to Low Pathogenic H9N2 Influenza Virus in Chicken Hepatoma Cells. Jundishapur J Microbiol. 2015 Jan 25;8(1):e13770. doi: 10.5812/jjm.13770. eCollection 2015 Jan. PMID: 25789133; PMCID: PMC4350051.
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Showing 1 to 12 of 2903 entries