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A xylose-stimulated xylanase-xylose binding protein chimera created by random nonhomologous recombination.

Biotechnology for biofuels

Ribeiro LF, Tullman J, Nicholes N, Silva SR, Vieira DS, Ostermeier M, Ward RJ.
PMID: 27274356
Biotechnol Biofuels. 2016 Jun 06;9:119. doi: 10.1186/s13068-016-0529-7. eCollection 2016.

BACKGROUND: Saccharification of lignocellulosic material by xylanases and other glycoside hydrolases is generally conducted at high concentrations of the final reaction products, which frequently inhibit the enzymes used in the saccharification process. Using a random nonhomologous recombination strategy, we...

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Ribeiro LF, Tullman J, Nicholes N, et al. A xylose-stimulated xylanase-xylose binding protein chimera created by random nonhomologous recombination. Biotechnol Biofuels. 2016;9:119doi: 10.1186/s13068-016-0529-7.
Ribeiro, L. F., Tullman, J., Nicholes, N., Silva, S. R., Vieira, D. S., Ostermeier, M., & Ward, R. J. (2016). A xylose-stimulated xylanase-xylose binding protein chimera created by random nonhomologous recombination. Biotechnology for biofuels, 9119. https://doi.org/10.1186/s13068-016-0529-7
Ribeiro, Lucas Ferreira, et al. "A xylose-stimulated xylanase-xylose binding protein chimera created by random nonhomologous recombination." Biotechnology for biofuels vol. 9 (2016): 119. doi: https://doi.org/10.1186/s13068-016-0529-7
Ribeiro LF, Tullman J, Nicholes N, Silva SR, Vieira DS, Ostermeier M, Ward RJ. A xylose-stimulated xylanase-xylose binding protein chimera created by random nonhomologous recombination. Biotechnol Biofuels. 2016 Jun 06;9:119. doi: 10.1186/s13068-016-0529-7. eCollection 2016. PMID: 27274356; PMCID: PMC4896006.
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A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres.

Frontiers in microbiology

Abdul Rahman N, Parks DH, Vanwonterghem I, Morrison M, Tyson GW, Hugenholtz P.
PMID: 26779135
Front Microbiol. 2016 Jan 07;6:1469. doi: 10.3389/fmicb.2015.01469. eCollection 2015.

The Fibrobacteres has been recognized as a bacterial phylum for over a decade, but little is known about the group beyond its environmental distribution, and characterization of its sole cultured representative genus, Fibrobacter, after which the phylum was named....

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Abdul Rahman N, Parks DH, Vanwonterghem I, et al. A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres. Front Microbiol. 2016;6:1469doi: 10.3389/fmicb.2015.01469.
Abdul Rahman, N., Parks, D. H., Vanwonterghem, I., Morrison, M., Tyson, G. W., & Hugenholtz, P. (2015). A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres. Frontiers in microbiology, 61469. https://doi.org/10.3389/fmicb.2015.01469
Abdul Rahman, Nurdyana, et al. "A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres." Frontiers in microbiology vol. 6 (2015): 1469. doi: https://doi.org/10.3389/fmicb.2015.01469
Abdul Rahman N, Parks DH, Vanwonterghem I, Morrison M, Tyson GW, Hugenholtz P. A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres. Front Microbiol. 2016 Jan 07;6:1469. doi: 10.3389/fmicb.2015.01469. eCollection 2015. PMID: 26779135; PMCID: PMC4704652.
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Enzymatic synthesis of glycosides: from natural .

Beilstein journal of organic chemistry

Ati J, Lafite P, Daniellou R.
PMID: 29062404
Beilstein J Org Chem. 2017 Sep 05;13:1857-1865. doi: 10.3762/bjoc.13.180. eCollection 2017.

Carbohydrate related enzymes, like glycosyltransferases and glycoside hydrolases, are nowadays more easily accessible and are thought to represent powerful and greener alternatives to conventional chemical glycosylation procedures. The knowledge of their corresponding mechanisms has already allowed the development of...

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Ati J, Lafite P, Daniellou R. Enzymatic synthesis of glycosides: from natural . Beilstein J Org Chem. 2017;13:1857-1865doi: 10.3762/bjoc.13.180.
Ati, J., Lafite, P., & Daniellou, R. (2017). Enzymatic synthesis of glycosides: from natural . Beilstein journal of organic chemistry, 131857-1865. https://doi.org/10.3762/bjoc.13.180
Ati, Jihen, et al. "Enzymatic synthesis of glycosides: from natural ." Beilstein journal of organic chemistry vol. 13 (2017): 1857-1865. doi: https://doi.org/10.3762/bjoc.13.180
Ati J, Lafite P, Daniellou R. Enzymatic synthesis of glycosides: from natural . Beilstein J Org Chem. 2017 Sep 05;13:1857-1865. doi: 10.3762/bjoc.13.180. eCollection 2017. PMID: 29062404; PMCID: PMC5629408.
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Isolation of aerobic cultivable cellulolytic bacteria from different regions of the gastrointestinal tract of giant land snail Achatina fulica.

Frontiers in microbiology

Pinheiro GL, Correa RF, Cunha RS, Cardoso AM, Chaia C, Clementino MM, Garcia ES, de Souza W, Frasés S.
PMID: 26347735
Front Microbiol. 2015 Aug 20;6:860. doi: 10.3389/fmicb.2015.00860. eCollection 2015.

The enzymatic hydrolysis of cellulose by cellulases is one of the major limiting steps in the conversion of lignocellulosic biomass to yield bioethanol. To overcome this hindrance, significant efforts are underway to identify novel cellulases. The snail Achatina fulica...

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Pinheiro GL, Correa RF, Cunha RS, et al. Isolation of aerobic cultivable cellulolytic bacteria from different regions of the gastrointestinal tract of giant land snail Achatina fulica. Front Microbiol. 2015;6:860doi: 10.3389/fmicb.2015.00860.
Pinheiro, G. L., Correa, R. F., Cunha, R. S., Cardoso, A. M., Chaia, C., Clementino, M. M., Garcia, E. S., de Souza, W., & Frasés, S. (2015). Isolation of aerobic cultivable cellulolytic bacteria from different regions of the gastrointestinal tract of giant land snail Achatina fulica. Frontiers in microbiology, 6860. https://doi.org/10.3389/fmicb.2015.00860
Pinheiro, Guilherme L, et al. "Isolation of aerobic cultivable cellulolytic bacteria from different regions of the gastrointestinal tract of giant land snail Achatina fulica." Frontiers in microbiology vol. 6 (2015): 860. doi: https://doi.org/10.3389/fmicb.2015.00860
Pinheiro GL, Correa RF, Cunha RS, Cardoso AM, Chaia C, Clementino MM, Garcia ES, de Souza W, Frasés S. Isolation of aerobic cultivable cellulolytic bacteria from different regions of the gastrointestinal tract of giant land snail Achatina fulica. Front Microbiol. 2015 Aug 20;6:860. doi: 10.3389/fmicb.2015.00860. eCollection 2015. PMID: 26347735; PMCID: PMC4542579.
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Editorial: Biomass Modification, Characterization, and Process Monitoring Analytics to Support Biofuel and Biomaterial Production.

Frontiers in bioengineering and biotechnology

Lupoi J, Simmons B, Henry R.
PMID: 27014688
Front Bioeng Biotechnol. 2016 Mar 10;4:25. doi: 10.3389/fbioe.2016.00025. eCollection 2016.

No abstract available.

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Lupoi J, Simmons B, Henry R. Editorial: Biomass Modification, Characterization, and Process Monitoring Analytics to Support Biofuel and Biomaterial Production. Front Bioeng Biotechnol. 2016;4:25doi: 10.3389/fbioe.2016.00025.
Lupoi, J., Simmons, B., & Henry, R. (2016). Editorial: Biomass Modification, Characterization, and Process Monitoring Analytics to Support Biofuel and Biomaterial Production. Frontiers in bioengineering and biotechnology, 425. https://doi.org/10.3389/fbioe.2016.00025
Lupoi, Jason, et al. "Editorial: Biomass Modification, Characterization, and Process Monitoring Analytics to Support Biofuel and Biomaterial Production." Frontiers in bioengineering and biotechnology vol. 4 (2016): 25. doi: https://doi.org/10.3389/fbioe.2016.00025
Lupoi J, Simmons B, Henry R. Editorial: Biomass Modification, Characterization, and Process Monitoring Analytics to Support Biofuel and Biomaterial Production. Front Bioeng Biotechnol. 2016 Mar 10;4:25. doi: 10.3389/fbioe.2016.00025. eCollection 2016. PMID: 27014688; PMCID: PMC4785235.
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Comparative Genomics of Four Isosphaeraceae Planctomycetes: A Common Pool of Plasmids and Glycoside Hydrolase Genes Shared by .

Frontiers in microbiology

Ivanova AA, Naumoff DG, Miroshnikov KK, Liesack W, Dedysh SN.
PMID: 28360896
Front Microbiol. 2017 Mar 16;8:412. doi: 10.3389/fmicb.2017.00412. eCollection 2017.

The family Isosphaeraceae accommodates stalk-free planctomycetes with spherical cells, which can be assembled in short chains, long filaments, or aggregates. These bacteria inhabit a wide variety of terrestrial environments, among those the recently described

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Ivanova AA, Naumoff DG, Miroshnikov KK, et al. Comparative Genomics of Four Isosphaeraceae Planctomycetes: A Common Pool of Plasmids and Glycoside Hydrolase Genes Shared by . Front Microbiol. 2017;8:412doi: 10.3389/fmicb.2017.00412.
Ivanova, A. A., Naumoff, D. G., Miroshnikov, K. K., Liesack, W., & Dedysh, S. N. (2017). Comparative Genomics of Four Isosphaeraceae Planctomycetes: A Common Pool of Plasmids and Glycoside Hydrolase Genes Shared by . Frontiers in microbiology, 8412. https://doi.org/10.3389/fmicb.2017.00412
Ivanova, Anastasia A, et al. "Comparative Genomics of Four Isosphaeraceae Planctomycetes: A Common Pool of Plasmids and Glycoside Hydrolase Genes Shared by ." Frontiers in microbiology vol. 8 (2017): 412. doi: https://doi.org/10.3389/fmicb.2017.00412
Ivanova AA, Naumoff DG, Miroshnikov KK, Liesack W, Dedysh SN. Comparative Genomics of Four Isosphaeraceae Planctomycetes: A Common Pool of Plasmids and Glycoside Hydrolase Genes Shared by . Front Microbiol. 2017 Mar 16;8:412. doi: 10.3389/fmicb.2017.00412. eCollection 2017. PMID: 28360896; PMCID: PMC5352709.
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Characterization of Potential Polysaccharide Utilization Systems in the Marine .

Frontiers in microbiology

Tang K, Lin Y, Han Y, Jiao N.
PMID: 28261179
Front Microbiol. 2017 Feb 14;8:220. doi: 10.3389/fmicb.2017.00220. eCollection 2017.

Members of phylum

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Tang K, Lin Y, Han Y, et al. Characterization of Potential Polysaccharide Utilization Systems in the Marine . Front Microbiol. 2017;8:220doi: 10.3389/fmicb.2017.00220.
Tang, K., Lin, Y., Han, Y., & Jiao, N. (2017). Characterization of Potential Polysaccharide Utilization Systems in the Marine . Frontiers in microbiology, 8220. https://doi.org/10.3389/fmicb.2017.00220
Tang, Kai, et al. "Characterization of Potential Polysaccharide Utilization Systems in the Marine ." Frontiers in microbiology vol. 8 (2017): 220. doi: https://doi.org/10.3389/fmicb.2017.00220
Tang K, Lin Y, Han Y, Jiao N. Characterization of Potential Polysaccharide Utilization Systems in the Marine . Front Microbiol. 2017 Feb 14;8:220. doi: 10.3389/fmicb.2017.00220. eCollection 2017. PMID: 28261179; PMCID: PMC5306329.
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Role of two alpha-L-arabinofuranosidases in arabinoxylan degradation and characteristics of the encoding genes from shochu koji molds, Aspergillus kawachii and Aspergillus awamori.

Journal of bioscience and bioengineering

Koseki T, Okuda M, Sudoh S, Kizaki Y, Iwano K, Aramaki I, Matsuzawa H.
PMID: 16233515
J Biosci Bioeng. 2003;96(3):232-41. doi: 10.1016/s1389-1723(03)80187-1.

Two different alpha-L-arabinofuranosidases from Aspergillus kawachii were purified and characterized. The two enzymes acted synergically with xylanase in the degradation of arabinoxylan and resulted in an increase in the amount of ferulic acid release by feruloyl esterase. Both enzymes...

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Koseki T, Okuda M, Sudoh S, et al. Role of two alpha-L-arabinofuranosidases in arabinoxylan degradation and characteristics of the encoding genes from shochu koji molds, Aspergillus kawachii and Aspergillus awamori. J Biosci Bioeng. 2003;96(3):232-41doi: 10.1016/s1389-1723(03)80187-1.
Koseki, T., Okuda, M., Sudoh, S., Kizaki, Y., Iwano, K., Aramaki, I., & Matsuzawa, H. (2003). Role of two alpha-L-arabinofuranosidases in arabinoxylan degradation and characteristics of the encoding genes from shochu koji molds, Aspergillus kawachii and Aspergillus awamori. Journal of bioscience and bioengineering, 96(3), 232-41. https://doi.org/10.1016/s1389-1723(03)80187-1
Koseki, Takuya, et al. "Role of two alpha-L-arabinofuranosidases in arabinoxylan degradation and characteristics of the encoding genes from shochu koji molds, Aspergillus kawachii and Aspergillus awamori." Journal of bioscience and bioengineering vol. 96,3 (2003): 232-41. doi: https://doi.org/10.1016/s1389-1723(03)80187-1
Koseki T, Okuda M, Sudoh S, Kizaki Y, Iwano K, Aramaki I, Matsuzawa H. Role of two alpha-L-arabinofuranosidases in arabinoxylan degradation and characteristics of the encoding genes from shochu koji molds, Aspergillus kawachii and Aspergillus awamori. J Biosci Bioeng. 2003;96(3):232-41. doi: 10.1016/s1389-1723(03)80187-1. PMID: 16233515.
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Draft Genome Sequence of Lignocellulose-Degrading Thermophilic Bacterium Geobacillus sp. Strain WSUCF1.

Genome announcements

Bhalla A, Kainth AS, Sani RK.
PMID: 23950119
Genome Announc. 2013 Aug 15;1(4). doi: 10.1128/genomeA.00595-13.

Geobacillus sp. strain WSUCF1 is a thermophilic spore-forming member of the phylum Firmicutes, isolated from a soil sample collected from the compost facility. We report the draft genome sequence of this isolate with an estimated genome size of 3.4...

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Bhalla A, Kainth AS, Sani RK. Draft Genome Sequence of Lignocellulose-Degrading Thermophilic Bacterium Geobacillus sp. Strain WSUCF1. Genome Announc. 2013;1(4)doi: 10.1128/genomeA.00595-13.
Bhalla, A., Kainth, A. S., & Sani, R. K. (2013). Draft Genome Sequence of Lignocellulose-Degrading Thermophilic Bacterium Geobacillus sp. Strain WSUCF1. Genome announcements, 1(4), . https://doi.org/10.1128/genomeA.00595-13
Bhalla, Aditya, et al. "Draft Genome Sequence of Lignocellulose-Degrading Thermophilic Bacterium Geobacillus sp. Strain WSUCF1." Genome announcements vol. 1,4 (2013). doi: https://doi.org/10.1128/genomeA.00595-13
Bhalla A, Kainth AS, Sani RK. Draft Genome Sequence of Lignocellulose-Degrading Thermophilic Bacterium Geobacillus sp. Strain WSUCF1. Genome Announc. 2013 Aug 15;1(4). doi: 10.1128/genomeA.00595-13. PMID: 23950119; PMCID: PMC3744675.
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Recombinant α-NAcetylgalactosaminidase from Marine Bacterium-Modifying A Erythrocyte Antigens.

Acta naturae

Balabanova LA, Golotin VA, Bakunina IY, Slepchenko LV, Isakov VV, Podvolotskaya AB, Rasskazov VA.
PMID: 25927009
Acta Naturae. 2015 Jan-Mar;7(1):117-20.

A plasmid based on pET-40b was constructed to synthesize recombinant α-N-acetylgalactosaminidase of the marine bacterium Arenibacter latericius KMM 426T (α-AlNaGal) in Escherichia coli cells. The yield of α-Al- NaGal attains 10 mg/ml with activity of 49.7 ± 1.3 U...

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Balabanova LA, Golotin VA, Bakunina IY, et al. Recombinant α-NAcetylgalactosaminidase from Marine Bacterium-Modifying A Erythrocyte Antigens. Acta Naturae. 2015;7(1):117-20
Balabanova, L. A., Golotin, V. A., Bakunina, I. Y., Slepchenko, L. V., Isakov, V. V., Podvolotskaya, A. B., & Rasskazov, V. A. (2015). Recombinant α-NAcetylgalactosaminidase from Marine Bacterium-Modifying A Erythrocyte Antigens. Acta naturae, 7(1), 117-20.
Balabanova, L A, et al. "Recombinant α-NAcetylgalactosaminidase from Marine Bacterium-Modifying A Erythrocyte Antigens." Acta naturae vol. 7,1 (2015): 117-20.
Balabanova LA, Golotin VA, Bakunina IY, Slepchenko LV, Isakov VV, Podvolotskaya AB, Rasskazov VA. Recombinant α-NAcetylgalactosaminidase from Marine Bacterium-Modifying A Erythrocyte Antigens. Acta Naturae. 2015 Jan-Mar;7(1):117-20. PMID: 25927009; PMCID: PMC4410403.
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De novo prediction of the genomic components and capabilities for microbial plant biomass degradation from (meta-)genomes.

Biotechnology for biofuels

Weimann A, Trukhina Y, Pope PB, Konietzny SG, McHardy AC.
PMID: 23414703
Biotechnol Biofuels. 2013 Feb 15;6(1):24. doi: 10.1186/1754-6834-6-24.

BACKGROUND: Understanding the biological mechanisms used by microorganisms for plant biomass degradation is of considerable biotechnological interest. Despite of the growing number of sequenced (meta)genomes of plant biomass-degrading microbes, there is currently no technique for the systematic determination of...

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Weimann A, Trukhina Y, Pope PB, et al. De novo prediction of the genomic components and capabilities for microbial plant biomass degradation from (meta-)genomes. Biotechnol Biofuels. 2013;6(1):24doi: 10.1186/1754-6834-6-24.
Weimann, A., Trukhina, Y., Pope, P. B., Konietzny, S. G., & McHardy, A. C. (2013). De novo prediction of the genomic components and capabilities for microbial plant biomass degradation from (meta-)genomes. Biotechnology for biofuels, 6(1), 24. https://doi.org/10.1186/1754-6834-6-24
Weimann, Aaron, et al. "De novo prediction of the genomic components and capabilities for microbial plant biomass degradation from (meta-)genomes." Biotechnology for biofuels vol. 6,1 (2013): 24. doi: https://doi.org/10.1186/1754-6834-6-24
Weimann A, Trukhina Y, Pope PB, Konietzny SG, McHardy AC. De novo prediction of the genomic components and capabilities for microbial plant biomass degradation from (meta-)genomes. Biotechnol Biofuels. 2013 Feb 15;6(1):24. doi: 10.1186/1754-6834-6-24. PMID: 23414703; PMCID: PMC3585893.
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The genome sequence of Dyella jiangningensis FCAV SCS01 from a lignocellulose-decomposing microbial consortium metagenome reveals potential for biotechnological applications.

Genetics and molecular biology

Desiderato JG, Alvarenga DO, Constancio MTL, Alves LMC, Varani AM.
PMID: 29767666
Genet Mol Biol. 2018 Apr./Jun;41(2):507-513. doi: 10.1590/1678-4685-GMB-2017-0155. Epub 2018 May 14.

Cellulose and its associated polymers are structural components of the plant cell wall, constituting one of the major sources of carbon and energy in nature. The carbon cycle is dependent on cellulose- and lignin-decomposing microbial communities and their enzymatic...

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Desiderato JG, Alvarenga DO, Constancio MTL, et al. The genome sequence of Dyella jiangningensis FCAV SCS01 from a lignocellulose-decomposing microbial consortium metagenome reveals potential for biotechnological applications. Genet Mol Biol. 2018;41(2):507-513doi: 10.1590/1678-4685-GMB-2017-0155.
Desiderato, J. G., Alvarenga, D. O., Constancio, M. T. L., Alves, L. M. C., & Varani, A. M. (2018). The genome sequence of Dyella jiangningensis FCAV SCS01 from a lignocellulose-decomposing microbial consortium metagenome reveals potential for biotechnological applications. Genetics and molecular biology, 41(2), 507-513. https://doi.org/10.1590/1678-4685-GMB-2017-0155
Desiderato, Joana G, et al. "The genome sequence of Dyella jiangningensis FCAV SCS01 from a lignocellulose-decomposing microbial consortium metagenome reveals potential for biotechnological applications." Genetics and molecular biology vol. 41,2 (2018): 507-513. doi: https://doi.org/10.1590/1678-4685-GMB-2017-0155
Desiderato JG, Alvarenga DO, Constancio MTL, Alves LMC, Varani AM. The genome sequence of Dyella jiangningensis FCAV SCS01 from a lignocellulose-decomposing microbial consortium metagenome reveals potential for biotechnological applications. Genet Mol Biol. 2018 Apr./Jun;41(2):507-513. doi: 10.1590/1678-4685-GMB-2017-0155. Epub 2018 May 14. PMID: 29767666; PMCID: PMC6082245.
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Showing 1 to 12 of 222 entries