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Bacterial DNA in Fetal Lung Samples May Be Explained by Sample Contamination.

American journal of respiratory and critical care medicine

de Steenhuijsen Piters WAA, Bogaert D.
PMID: 32049545
Am J Respir Crit Care Med. 2020 May 15;201(10):1310-1311. doi: 10.1164/rccm.202001-0050LE.

No abstract available.

Topological events in single molecules of E. coli DNA confined in nanochannels.

The Analyst

Reifenberger JG, Dorfman KD, Cao H.
PMID: 25991508
Analyst. 2015 Jul 21;140(14):4887-94. doi: 10.1039/c5an00343a. Epub 2015 May 20.

We present experimental data concerning potential topological events such as folds, internal backfolds, and/or knots within long molecules of double-stranded DNA when they are stretched by confinement in a nanochannel. Genomic DNA from E. coli was labeled near the...

Epigenetic mechanisms in microbial members of the human microbiota: current knowledge and perspectives.


Cureau N, AlJahdali N, Vo N, Carbonero F.
PMID: 27587189
Epigenomics. 2016 Sep;8(9):1259-73. doi: 10.2217/epi-2016-0057. Epub 2016 Sep 02.

The human microbiota and epigenetic processes have both been shown to play a crucial role in health and disease. However, there is extremely scarce information on epigenetic modulation of microbiota members except for a few pathogens. Mainly DNA adenine...

Rapid real-time recirculating PCR using localized surface plasmon resonance (LSPR) and piezo-electric pumping.

Lab on a chip

Haber JM, Gascoyne PRC, Sokolov K.
PMID: 28703830
Lab Chip. 2017 Aug 08;17(16):2821-2830. doi: 10.1039/c7lc00211d.

Rapid detection and characterization of pathogens in patients with bloodstream infections (BSIs) is a persistent problem for modern medicine, as current techniques are slow or provide incomplete diagnostic information. Real-time polymerase chain reaction (qPCR) allows specific detection of a...

How cells in distress use SOS.


Sedgwick SG, Yarranton GT.
PMID: 7070507
Nature. 1982 Apr 15;296(5858):606-7. doi: 10.1038/296606a0.

No abstract available.

Reply to de Steenhuijsen Piters and Bogaert: Bacterial DNA in Fetal Lung Samples May Be Explained by Sample Contamination.

American journal of respiratory and critical care medicine

Al Alam D, Danopoulos S, Grubbs B, Ali NABM, Mac Aogáin M, Chotirmall SH, Warburton D, Gaggar A, Ambalavanan N, Lal CV.
PMID: 32049546
Am J Respir Crit Care Med. 2020 May 15;201(10):1311-1312. doi: 10.1164/rccm.202001-0221LE.

No abstract available.

Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches.

Acta crystallographica. Section D, Structural biology

Kolenko P, Svoboda J, Černý J, Charnavets T, Schneider B.
PMID: 33263329
Acta Crystallogr D Struct Biol. 2020 Dec 01;76:1233-1243. doi: 10.1107/S2059798320014151. Epub 2020 Nov 24.

Solution and crystal data are reported for DNA 18-mers with sequences related to those of bacterial noncoding single-stranded DNA segments called repetitive extragenic palindromes (REPs). Solution CD and melting data showed that the CG-rich, near-palindromic REPs from various bacterial...

Integr8 and Genome Reviews: integrated views of complete genomes and proteomes.

Nucleic acids research

Kersey P, Bower L, Morris L, Horne A, Petryszak R, Kanz C, Kanapin A, Das U, Michoud K, Phan I, Gattiker A, Kulikova T, Faruque N, Duggan K, Mclaren P, Reimholz B, Duret L, Penel S, Reuter I, Apweiler R.
PMID: 15608201
Nucleic Acids Res. 2005 Jan 01;33:D297-302. doi: 10.1093/nar/gki039.

Integr8 is a new web portal for exploring the biology of organisms with completely deciphered genomes. For over 190 species, Integr8 provides access to general information, recent publications, and a detailed statistical overview of the genome and proteome of...

Simultaneous Detection of Multiple Wine-Spoilage Organisms Using a PCR-Based DNA Dipstick Assay.

Journal of AOAC International

Janagama HK, Mai T, Han S, Nadala L, Nadala C, Samadpour M.
PMID: 30126467
J AOAC Int. 2019 Mar 01;102(2):490-496. doi: 10.5740/jaoacint.18-0144. Epub 2018 Aug 20.

No abstract available.

Rapid Sample Preparation and LAMP for Phytoplasma Detection.

Methods in molecular biology (Clifton, N.J.)

Hodgetts J.
PMID: 30362005
Methods Mol Biol. 2019;1875:187-201. doi: 10.1007/978-1-4939-8837-2_15.

Loop-mediated isothermal AMPlification (LAMP) allows the rapid detection of pathogens by polymerase-mediated amplification of target nucleic acid sequences at a single incubation temperature. LAMP can be combined with very simple sample preparation/crude DNA extraction protocols, allowing the method to...

Longitudinal changes of microbiome composition and microbial metabolomics after surgical weight loss in individuals with obesity.

Surgery for obesity and related diseases : official journal of the American Society for Bariatric Surgery

Shen N, Caixàs A, Ahlers M, Patel K, Gao Z, Dutia R, Blaser MJ, Clemente JC, Laferrère B.
PMID: 31296445
Surg Obes Relat Dis. 2019 Aug;15(8):1367-1373. doi: 10.1016/j.soard.2019.05.038. Epub 2019 Jun 10.

BACKGROUND: Some of the metabolic effects of bariatric surgery may be mediated by the gut microbiome.OBJECTIVES: To study the effect of bariatric surgery on changes to gut microbiota composition and bacterial pathways, and their relation to metabolic parameters after...

[The structure of bacterial desoxyribonucleic acids in solution].

Journal of molecular biology

PMID: 13931886
J Mol Biol. 1962 Oct;5:375-83. doi: 10.1016/s0022-2836(62)80026-6.

No abstract available.

Showing 1 to 12 of 26 entries